Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016418

Physical Location & Seq

Genomic Coordinates Forward (+)

36741814 .. 36743695

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G427500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGGAGAGTGAAGCTTCAAATCAAGATGATTGAAAATACGACTAATAGACAAGTTACTTACTCAAAAAGAAGAAACGGACTTATGAAGAAAGCTTATGAACTTTCTGTTCTATGTGATGTTGATGTAGCTCTCATCATGTTTTCTCCATCTGGGAGACTCAGTCTCTTCTCTGGCAATAAAAGCATTGAAGAGATTCTGGCACGCTATGTTAATCTTCCAGGGCATGAACGAGGAGGACGAGTTAAAATTGTCAATACTTCAGTTATATTTGAAGATAAGATTCGCGGAAACATAAAAGAAAGTAGGAATATATATAAACATAAACGATATATTGACAATTTTCCATGTCATTTTGATGGATGCAGCCCAATCAGTACTGATTCTGATCAACTCGAGGAGATTCAACAAGAAATCCTATGCTGCAAGTCACAAGTAAAAGAAGTGGAAAATCAACTGAGGATATTTGAAGGTGATCTTTCTGAAGTCACGACATTGAATGAGGCTGAGTACCGAGAGCAGATCCTTGAGGAAACTCTGAAACGTATGCATGTGCGCAAGCAAATCCTGGAAGAGTATGATTCTTCTCCTACAGCTACAACAAATGTAGATGAATTTGTGACAGCAAGTCCACACAATATTCTGGTTGACTGGCTTCCACAAAGAGACCCACAAGTAGTTCAGATCCTCAACTTCTTGAATGCAAATGGCCTTCTTCCCCTAAGAGGTGAGGCGAAAAGTAGACTTGAAGTCATAGCAGCACCCGAGTCATCAACACTCCTTCATGGCATAAATCTTGAAGATCAGATGAACCCAGGCAGAGGCAGTGGTTTAGACGATGAGAATAACAACACTACTTTGCAACGTCCAGAGTTGGGACAAGTTATTGATGTCAACTTGTCCCCGTGGAATGAGTTCTACCAGACAAGTACTTGTTTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04064 ko04371 ko04620 ko04624 ko04722 ko04921 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 ko05202 ko05418 map04010 map04013 map04022 map04064 map04371 map04620 map04624 map04722 map04921 map05133 map05140 map05142 map05145 map05152 map05162 map05169 map05202 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

315

Amino Acids

35.76

Weight (kDa)

5.34

Isoelectric Point (pI)

55.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016418)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G427500_v2.0.a1 Prupe.1G427600_v2.0.a1
pyrus_communis	pycom08g07350
rosa_chinensis	RchiOBHm_Chr6g0295371 RchiOBHm_Chr6g0295381
rosa_laevigata	RLG00000011811
rosa_multiflora	Rmu_sc0003058.1_g000013 Rmu_sc0031171.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172550
rosa_rugosa	Rorug06G0250300
rosa_samantha	Rh6AG363500 Rh6BG371700 Rh6CG378100 Rh6DG364300
rosa_wichuraiana	Rw6G031730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	557
AccI	GTMKAC	1 cut(s)	742
AccII	CGCG	1 cut(s)	288
AciI	CCGC	1 cut(s)	288
AclWI	GGATC	2 cut(s)	517, 679
AcsI	RAATTY	1 cut(s)	614
AcuI	CTGAAG	2 cut(s)	246, 504
AfaI	GTAC	3 cut(s)	379, 512, 931
AfiI	CCNNNNNNNGG	3 cut(s)	725, 821, 875
AhdI	GACNNNNNGTC	2 cut(s)	627, 749
AjnI	CCWGG	3 cut(s)	220, 567, 814
AluBI	AGCT	4 cut(s)	16, 95, 131, 596
AluI	AGCT	4 cut(s)	16, 95, 131, 596
Alw26I	GTCTC	3 cut(s)	151, 170, 660
AlwI	GGATC	2 cut(s)	517, 679
Ama87I	CYCGRG	2 cut(s)	395, 764
AoxI	GGCC	1 cut(s)	709
ApeKI	GCWGC	3 cut(s)	366, 423, 758
ApoI	RAATTY	1 cut(s)	614
Asp700I	GAANNNNTTC	2 cut(s)	195, 914
AspLEI	GCGC	1 cut(s)	558
AsuHPI	GGTGA	2 cut(s)	485, 740
AvaI	CYCGRG	2 cut(s)	395, 764
BbvI	GCAGC	3 cut(s)	378, 410, 770
BccI	CCATC	2 cut(s)	157, 353
BciT130I	CCWGG	3 cut(s)	222, 569, 816
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	3 cut(s)	151, 170, 660
BfmI	CTRYAG	1 cut(s)	591
BisI	GCNGC	3 cut(s)	367, 424, 759
BlsI	GCNGC	3 cut(s)	368, 425, 760
BmcAI	AGTACT	2 cut(s)	379, 931
Bme1390I	CCNGG	3 cut(s)	222, 569, 816
BmeRI	GACNNNNNGTC	2 cut(s)	627, 749
BmeT110I	CYCGRG	2 cut(s)	395, 764
BmrFI	CCNGG	3 cut(s)	222, 569, 816
BmsI	GCATC	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	548
BsaBI	GATNNNNATC	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	660
BsaJI	CCNNGG	3 cut(s)	221, 814, 905
BsaXI	ACNNNNNCTCC	4 cut(s)	148, 178, 228, 258
Bsc4I	CCNNNNNNNGG	3 cut(s)	725, 821, 875
Bse1I	ACTGG	1 cut(s)	656
Bse8I	GATNNNNATC	1 cut(s)	387
BseBI	CCWGG	3 cut(s)	222, 569, 816
BseDI	CCNNGG	3 cut(s)	221, 814, 905
BseGI	GGATG	1 cut(s)	368
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	3 cut(s)	725, 821, 875
BseMII	CTCAG	3 cut(s)	175, 449, 498
BseNI	ACTGG	1 cut(s)	656
BseRI	GAGGAG	2 cut(s)	249, 413
BseXI	GCAGC	3 cut(s)	378, 410, 770
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	711
BsiHKCI	CYCGRG	2 cut(s)	395, 764
BslFI	GGGAC	2 cut(s)	886, 891
BslI	CCNNNNNNNGG	3 cut(s)	725, 821, 875
BsmAI	GTCTC	3 cut(s)	151, 170, 660
BsmFI	GGGAC	2 cut(s)	886, 891
BsmI	GAATGC	1 cut(s)	706
BsnI	GGCC	1 cut(s)	711
Bso31I	GGTCTC	1 cut(s)	660
BsoBI	CYCGRG	2 cut(s)	395, 764
Bsp143I	GATC	5 cut(s)	388, 475, 522, 684, 802
BspACI	CCGC	1 cut(s)	288
BspANI	GGCC	1 cut(s)	711
BspCNI	CTCAG	3 cut(s)	174, 450, 499
BspFNI	CGCG	1 cut(s)	288
BspPI	GGATC	2 cut(s)	517, 679
BspTNI	GGTCTC	1 cut(s)	660
BsrI	ACTGG	1 cut(s)	656
BssECI	CCNNGG	3 cut(s)	221, 814, 905
BssMI	GATC	5 cut(s)	388, 475, 522, 684, 802
Bst2UI	CCWGG	3 cut(s)	222, 569, 816
Bst6I	CTCTTC	3 cut(s)	173, 186, 567
BstC8I	GCNNGC	2 cut(s)	205, 560
BstDEI	CTNAG	4 cut(s)	161, 458, 507, 722
BstDSI	CCRYGG	1 cut(s)	905
BstF5I	GGATG	1 cut(s)	368
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	558
BstKTI	GATC	5 cut(s)	391, 478, 525, 687, 805
BstMAI	GTCTC	3 cut(s)	151, 170, 660
BstMBI	GATC	5 cut(s)	388, 475, 522, 684, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstNI	CCWGG	3 cut(s)	222, 569, 816
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	3 cut(s)	220, 567, 814
BstSFI	CTRYAG	1 cut(s)	591
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	3 cut(s)	378, 410, 770
BstX2I	RGATCY	2 cut(s)	522, 684
BstYI	RGATCY	2 cut(s)	522, 684
BsuRI	GGCC	1 cut(s)	711
BtgI	CCRYGG	1 cut(s)	905
BtsCI	GGATG	1 cut(s)	368
BtsI	GCAGTG	1 cut(s)	832
BtsIMutI	CAGTG	1 cut(s)	832
Cac8I	GCNNGC	2 cut(s)	205, 560
CfoI	GCGC	1 cut(s)	558
Csp6I	GTAC	3 cut(s)	378, 511, 930
CviAII	CATG	6 cut(s)	139, 227, 348, 551, 785, 942
CviJI	RGCY	8 cut(s)	16, 95, 131, 369, 506, 596, 655, 711
CviKI_1	RGCY	8 cut(s)	16, 95, 131, 369, 506, 596, 655, 711
CviQI	GTAC	3 cut(s)	378, 511, 930
DdeI	CTNAG	4 cut(s)	161, 458, 507, 722
DpnI	GATC	5 cut(s)	390, 477, 524, 686, 804
DpnII	GATC	5 cut(s)	388, 475, 522, 684, 802
DriI	GACNNNNNGTC	2 cut(s)	627, 749
Eam1104I	CTCTTC	3 cut(s)	173, 186, 567
Eam1105I	GACNNNNNGTC	2 cut(s)	627, 749
EarI	CTCTTC	3 cut(s)	173, 186, 567
Eco31I	GGTCTC	1 cut(s)	660
Eco57I	CTGAAG	2 cut(s)	246, 504
Eco88I	CYCGRG	2 cut(s)	395, 764
EcoRII	CCWGG	3 cut(s)	220, 567, 814
EcoT22I	ATGCAT	1 cut(s)	552
FaeI	CATG	6 cut(s)	142, 230, 351, 554, 788, 945
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FaqI	GGGAC	2 cut(s)	886, 891
FatI	CATG	6 cut(s)	138, 226, 347, 550, 784, 941
FbaI	TGATCA	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	742
Fnu4HI	GCNGC	3 cut(s)	367, 424, 759
FokI	GGATG	1 cut(s)	375
Fsp4HI	GCNGC	3 cut(s)	367, 424, 759
FspI	TGCGCA	1 cut(s)	557
GlaI	GCGC	1 cut(s)	557
GluI	GCNGC	3 cut(s)	367, 424, 759
HaeIII	GGCC	1 cut(s)	711
HhaI	GCGC	1 cut(s)	558
Hin1II	CATG	6 cut(s)	142, 230, 351, 554, 788, 945
Hin6I	GCGC	1 cut(s)	556
HinP1I	GCGC	1 cut(s)	556
HincII	GTYRAC	2 cut(s)	649, 895
HindII	GTYRAC	2 cut(s)	649, 895
HindIII	AAGCTT	2 cut(s)	14, 93
HinfI	GANTC	7 cut(s)	159, 196, 283, 383, 403, 581, 767
HphI	GGTGA	2 cut(s)	485, 740
Hpy166II	GTNNAC	4 cut(s)	632, 649, 743, 895
Hpy188I	TCNGA	5 cut(s)	388, 484, 540, 684, 807
Hpy188III	TCNNGA	5 cut(s)	25, 490, 697, 797, 869
Hpy8I	GTNNAC	4 cut(s)	632, 649, 743, 895
HpyAV	CCTTC	3 cut(s)	464, 722, 791
HpyCH4IV	ACGT	2 cut(s)	544, 865
HpyCH4V	TGCA	6 cut(s)	366, 426, 550, 704, 862, 941
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
HpyF3I	CTNAG	4 cut(s)	161, 458, 507, 722
HpySE526I	ACGT	2 cut(s)	544, 865
Hsp92II	CATG	6 cut(s)	142, 230, 351, 554, 788, 945
HspAI	GCGC	1 cut(s)	556
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	5 cut(s)	388, 475, 522, 684, 802
Lsp1109I	GCAGC	3 cut(s)	378, 410, 770
LweI	GCATC	1 cut(s)	353
MaeII	ACGT	2 cut(s)	544, 865
MaeIII	GTNAC	4 cut(s)	55, 429, 487, 619
MalI	GATC	5 cut(s)	390, 477, 524, 686, 804
MboI	GATC	5 cut(s)	388, 475, 522, 684, 802
MflI	RGATCY	2 cut(s)	522, 684
MluCI	AATT	3 cut(s)	249, 340, 614
MlyI	GAGTC	2 cut(s)	153, 776
Mph1103I	ATGCAT	1 cut(s)	552
MroXI	GAANNNNTTC	2 cut(s)	195, 914
MseI	TTAA	2 cut(s)	213, 246
MslI	CAYNNNNRTG	1 cut(s)	357
MspR9I	CCNGG	3 cut(s)	222, 569, 816
Mva1269I	GAATGC	1 cut(s)	706
MvaI	CCWGG	3 cut(s)	222, 569, 816
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	183
NdeII	GATC	5 cut(s)	388, 475, 522, 684, 802
NlaIII	CATG	6 cut(s)	142, 230, 351, 554, 788, 945
NmuCI	GTSAC	3 cut(s)	429, 487, 619
NsbI	TGCGCA	1 cut(s)	557
NsiI	ATGCAT	1 cut(s)	552
NspI	RCATGY	1 cut(s)	554
PaeR7I	CTCGAG	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PctI	GAATGC	1 cut(s)	706
PdmI	GAANNNNTTC	2 cut(s)	195, 914
PfeI	GAWTC	5 cut(s)	196, 283, 383, 403, 581
PflFI	GACNNNGTC	1 cut(s)	162
PfoI	TCCNGGA	1 cut(s)	567
PkrI	GCNGC	3 cut(s)	368, 425, 760
PleI	GAGTC	2 cut(s)	153, 775
PpsI	GAGTC	2 cut(s)	153, 775
Psp6I	CCWGG	3 cut(s)	220, 567, 814
PspGI	CCWGG	3 cut(s)	220, 567, 814
PspXI	VCTCGAGB	1 cut(s)	395
PsuI	RGATCY	2 cut(s)	522, 684
PsyI	GACNNNGTC	1 cut(s)	162
RsaI	GTAC	3 cut(s)	379, 512, 931
RsaNI	GTAC	3 cut(s)	378, 511, 930
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	213, 246
SatI	GCNGC	3 cut(s)	367, 424, 759
Sau3AI	GATC	5 cut(s)	388, 475, 522, 684, 802
ScaI	AGTACT	2 cut(s)	379, 931
SchI	GAGTC	2 cut(s)	153, 776
ScrFI	CCNGG	3 cut(s)	222, 569, 816
SetI	ASST	8 cut(s)	18, 97, 133, 475, 547, 598, 730, 868
SfaNI	GCATC	1 cut(s)	353
SfcI	CTRYAG	1 cut(s)	591
Sfr274I	CTCGAG	1 cut(s)	395
SlaI	CTCGAG	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	395, 527
SmoI	CTYRAG	2 cut(s)	395, 527
Sse9I	AATT	3 cut(s)	249, 340, 614
SsiI	CCGC	1 cut(s)	288
SspI	AATATT	1 cut(s)	640
StyD4I	CCNGG	3 cut(s)	220, 567, 814
TaiI	ACGT	2 cut(s)	547, 868
TaqI	TCGA	1 cut(s)	396
TasI	AATT	3 cut(s)	249, 340, 614
TatI	WGTACW	2 cut(s)	377, 929
TfiI	GAWTC	5 cut(s)	196, 283, 383, 403, 581
Tru1I	TTAA	2 cut(s)	213, 246
Tru9I	TTAA	2 cut(s)	213, 246
TscAI	CASTG	1 cut(s)	832
TseFI	GTSAC	3 cut(s)	429, 487, 619
TseI	GCWGC	3 cut(s)	366, 423, 758
Tsp45I	GTSAC	3 cut(s)	429, 487, 619
TspDTI	ATGAA	6 cut(s)	101, 114, 243, 627, 773, 824
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	832
Tth111I	GACNNNGTC	1 cut(s)	162
XapI	RAATTY	1 cut(s)	614
XceI	RCATGY	1 cut(s)	554
XhoI	CTCGAG	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	742
XmnI	GAANNNNTTC	2 cut(s)	195, 914
ZrmI	AGTACT	2 cut(s)	379, 931
Zsp2I	ATGCAT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.