Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003058.1

Orthogroup ID

OG0016418

Physical Location & Seq

Genomic Coordinates Reverse (-)

53239 .. 54058

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003058.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgtttagaatatttgaaggtgatctctctaagatcacaacattggccgatattgagttacgggagcacatcctcgagaaaactcttaatcgtctatacatgcgcaagattcatcttcctccaaatgcagatgaacttgtgattgcagcaggaagtagtactactcaacccacttatctggaccctcaagttgagatcttaaatttcttgagtgcaaatggctttcttcccctcagcagtgattcagcgccccagccagttgctgtagcagcaccgatgttaccccttgatagccaaaacacgaatctcgatgatgatatgatcaatctagcaaatggttttgagggtgaaaataacaataggagatcagtagtagcgcaagtacaacaagaatatcttgaaatcgaacaaggcactgatgtcaacttgttaccatggaatcagttgtatcccacaggtacaactttgatgtgcatatatgttaaaattttttattctcaagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04064 ko04371 ko04620 ko04624 ko04722 ko04921 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 ko05202 ko05418 map04010 map04013 map04022 map04064 map04371 map04620 map04624 map04722 map04921 map05133 map05140 map05142 map05145 map05152 map05162 map05169 map05202 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

168

Amino Acids

18.87

Weight (kDa)

4.41

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016418)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G427500_v2.0.a1 Prupe.1G427600_v2.0.a1
pyrus_communis	pycom08g07350
rosa_chinensis	RchiOBHm_Chr6g0295371 RchiOBHm_Chr6g0295381
rosa_laevigata	RLG00000011811
rosa_multiflora	Rmu_sc0003058.1_g000013 Rmu_sc0031171.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172550
rosa_rugosa	Rorug06G0250300
rosa_samantha	Rh6AG363500 Rh6BG371700 Rh6CG378100 Rh6DG364300
rosa_wichuraiana	Rw6G031730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	104
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	2 cut(s)	202, 486
AfaI	GTAC	3 cut(s)	160, 384, 460
AgsI	TTSAA	2 cut(s)	17, 401
Alw21I	GWGCWC	1 cut(s)	69
AlwNI	CAGNNNCTG	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	2 cut(s)	146, 269
ApoI	RAATTY	2 cut(s)	202, 486
AspLEI	GCGC	3 cut(s)	105, 250, 379
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	32, 359
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	181
BarI	GAAGNNNNNNTAC	2 cut(s)	145, 177
Bbv12I	GWGCWC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	233
BbvI	GCAGC	2 cut(s)	158, 281
BciVI	GTATCC	1 cut(s)	459
BclI	TGATCA	1 cut(s)	321
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	459
BglII	AGATCT	1 cut(s)	195
BisI	GCNGC	2 cut(s)	147, 270
BlsI	GCNGC	2 cut(s)	148, 271
BmcAI	AGTACT	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	183
Bpu10I	CCTNAGC	1 cut(s)	233
BpuEI	CTTGAG	3 cut(s)	171, 229, 483
BsaJI	CCNNGG	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	434
BseGI	GGATG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	257
BseXI	GCAGC	2 cut(s)	158, 281
BseYI	CCCAGC	1 cut(s)	252
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	74
BsnI	GGCC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	5 cut(s)	22, 33, 195, 321, 365
Bsp19I	CCATGG	1 cut(s)	434
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	5 cut(s)	22, 33, 195, 321, 365
BssT1I	CCWWGG	1 cut(s)	434
BstDEI	CTNAG	2 cut(s)	30, 233
BstDSI	CCRYGG	1 cut(s)	434
BstF5I	GGATG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	3 cut(s)	105, 250, 379
BstKTI	GATC	5 cut(s)	25, 36, 198, 324, 368
BstMBI	GATC	5 cut(s)	22, 33, 195, 321, 365
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	103
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	158, 281
BstX2I	RGATCY	1 cut(s)	195
BstXI	CCANNNNNNTGG	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	434
BtsCI	GGATG	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	2 cut(s)	244, 414
CaiI	CAGNNNCTG	1 cut(s)	263
CfoI	GCGC	3 cut(s)	105, 250, 379
Cfr13I	GGNCC	1 cut(s)	181
Csp6I	GTAC	3 cut(s)	159, 383, 459
CviAII	CATG	2 cut(s)	100, 435
CviJI	RGCY	4 cut(s)	47, 222, 256, 294
CviKI_1	RGCY	4 cut(s)	47, 222, 256, 294
CviQI	GTAC	3 cut(s)	159, 383, 459
DdeI	CTNAG	2 cut(s)	30, 233
DpnI	GATC	5 cut(s)	24, 35, 197, 323, 367
DpnII	GATC	5 cut(s)	22, 33, 195, 321, 365
EaeI	YGGCCR	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	2 cut(s)	103, 438
FaiI	YATR	7 cut(s)	97, 101, 320, 436, 476, 478, 480
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FatI	CATG	2 cut(s)	99, 434
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	2 cut(s)	147, 270
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	2 cut(s)	147, 270
FspBI	CTAG	1 cut(s)	329
FspI	TGCGCA	1 cut(s)	104
GlaI	GCGC	3 cut(s)	104, 249, 378
GluI	GCNGC	2 cut(s)	147, 270
GsaI	CCCAGC	1 cut(s)	256
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	47
HhaI	GCGC	3 cut(s)	105, 250, 379
Hin1II	CATG	2 cut(s)	103, 438
Hin6I	GCGC	3 cut(s)	103, 248, 377
HinP1I	GCGC	3 cut(s)	103, 248, 377
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	4 cut(s)	109, 242, 304, 439
HphI	GGTGA	2 cut(s)	32, 359
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188III	TCNNGA	6 cut(s)	76, 179, 208, 308, 398, 500
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	1 cut(s)	11
HpyCH4V	TGCA	4 cut(s)	128, 146, 215, 474
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	2 cut(s)	30, 233
Hsp92II	CATG	2 cut(s)	103, 438
HspAI	GCGC	3 cut(s)	103, 248, 377
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	5 cut(s)	22, 33, 195, 321, 365
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	5 cut(s)	135, 164, 266, 270, 441
Lsp1109I	GCAGC	2 cut(s)	158, 281
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	3 cut(s)	57, 279, 429
MalI	GATC	5 cut(s)	24, 35, 197, 323, 367
MboI	GATC	5 cut(s)	22, 33, 195, 321, 365
MboII	GAAGA	2 cut(s)	107, 218
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	2 cut(s)	202, 486
MnlI	CCTC	5 cut(s)	83, 129, 195, 242, 337
MseI	TTAA	3 cut(s)	87, 200, 483
MwoI	GCNNNNNNNGC	1 cut(s)	269
NcoI	CCATGG	1 cut(s)	434
NdeII	GATC	5 cut(s)	22, 33, 195, 321, 365
NlaIII	CATG	2 cut(s)	103, 438
NlaIV	GGNNCC	1 cut(s)	183
NsbI	TGCGCA	1 cut(s)	104
NspI	RCATGY	1 cut(s)	103
PaeR7I	CTCGAG	1 cut(s)	74
PfeI	GAWTC	4 cut(s)	109, 242, 304, 439
PkrI	GCNGC	2 cut(s)	148, 271
PspFI	CCCAGC	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	181
PstNI	CAGNNNCTG	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	3 cut(s)	160, 384, 460
RsaNI	GTAC	3 cut(s)	159, 383, 459
SaqAI	TTAA	3 cut(s)	87, 200, 483
SatI	GCNGC	2 cut(s)	147, 270
Sau3AI	GATC	5 cut(s)	22, 33, 195, 321, 365
Sau96I	GGNCC	1 cut(s)	181
ScaI	AGTACT	1 cut(s)	160
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	2 cut(s)	22, 460
SfcI	CTRYAG	1 cut(s)	264
Sfr274I	CTCGAG	1 cut(s)	74
SinI	GGWCC	1 cut(s)	181
SlaI	CTCGAG	1 cut(s)	74
SmlI	CTYRAG	4 cut(s)	74, 186, 208, 498
SmoI	CTYRAG	4 cut(s)	74, 186, 208, 498
Sse9I	AATT	2 cut(s)	202, 486
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	1 cut(s)	329
StyI	CCWWGG	1 cut(s)	434
TaqI	TCGA	3 cut(s)	75, 309, 405
TasI	AATT	2 cut(s)	202, 486
TatI	WGTACW	2 cut(s)	158, 382
TfiI	GAWTC	4 cut(s)	109, 242, 304, 439
Tru1I	TTAA	3 cut(s)	87, 200, 483
Tru9I	TTAA	3 cut(s)	87, 200, 483
TscAI	CASTG	2 cut(s)	244, 421
TseI	GCWGC	2 cut(s)	146, 269
TspDTI	ATGAA	2 cut(s)	101, 147
TspRI	CASTG	2 cut(s)	244, 421
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	2 cut(s)	202, 486
XceI	RCATGY	1 cut(s)	103
XhoI	CTCGAG	1 cut(s)	74
XspI	CTAG	1 cut(s)	329
ZrmI	AGTACT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.