Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016418

Physical Location & Seq

Genomic Coordinates Forward (+)

56262415 .. 56268989

Gene Structure 6575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG363500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAGCTCTAGCACTAGCAGGGACGACAAGGTTTCAGCGTCACAGTCATGTAGGTTTGGTCTTCAAGCTGGTTTAGCAGGAAGAGTTAGTTTACTGAAATATAATCTGAAAGGGTCAAAAGCACACTCAGGAAGAAAATCTGTAAAGAAGCTCTCATCATGTTTTCTCCGTCTGGGAGACTTAGGGTGTGTTTGTCTATTCTCTGGCAATAAAAGTATTGAAGACATTTTAGCACGATATATCAATTATTCAAGACATGAACGAATATGTCTTCATAATGAAGAGATTCTTTGCAGCATTCTTAATAAGCTGAAGAGTGAAGCTAATCAAACGTTTCAAACAATTAGCCCAGTTAGTGGAGATTTTGATCATGTGCAGGAGATTCAACAAGGAATCCTATACTGTAAGTCACAAATGGAAGAAGTGGAAAATCAACTCAGAATATTTGAAGGTGATCTCTCTAAGATCACAACACTGGCCGATATTGAGTTACGGGAGCACATCCTCGAGAAAACTCTTAATCGTCTATACATGCGCAAGCAAGTTCTAGGAGTGTGTAATTCTTCCTCTGCTATAGCAGTACAACCACAGATTCATCTTCCTCCAAATGCAGATGAACTTGTGATTGCAGCAGGAAGTAGTACTACTCAACCCACTTATCTGGACCCTCAAGTTGAGATCTTAAATTTCTTGAGTGCAAATGGCTTTCTTCCCCTCAGTGATTCAGCGCCCCAGCCAGTTGCTGTAGCAGCACCGATGTTACCCCTTGATAGCCAAAACACGAATCTCGATGATGATACGATCAATCTAGCAAATGGTTTTGAGGGTGAAAATAACAATAGGAGATCAGTGGTAGCGCAAGTACAACAAGAATATCTTGAAATCGAACAAGGCACTGATGTCAACTTGTTACCATGGAATCAGTTGTATCCCACAGGAAATAACGCACCCATTCCTCCTTCACAGCAAAGACGACAACAAGTACTTCATATGTCTCAGCTGTTCACACATCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

339

Amino Acids

37.64

Weight (kDa)

5.78

Isoelectric Point (pI)

58.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016418)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G427500_v2.0.a1 Prupe.1G427600_v2.0.a1
pyrus_communis	pycom08g07350
rosa_chinensis	RchiOBHm_Chr6g0295371 RchiOBHm_Chr6g0295381
rosa_laevigata	RLG00000011811
rosa_multiflora	Rmu_sc0003058.1_g000013 Rmu_sc0031171.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172550
rosa_rugosa	Rorug06G0250300
rosa_samantha	Rh6AG363500 Rh6BG371700 Rh6CG378100 Rh6DG364300
rosa_wichuraiana	Rw6G031730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	536
AccB7I	CCANNNNNTGG	1 cut(s)	356
AclI	AACGTT	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	1 cut(s)	685
AcuI	CTGAAG	1 cut(s)	332
AfaI	GTAC	4 cut(s)	582, 643, 864, 984
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	7 cut(s)	65, 221, 252, 338, 386, 449, 881
AluBI	AGCT	6 cut(s)	6, 68, 151, 310, 323, 1000
AluI	AGCT	6 cut(s)	6, 68, 151, 310, 323, 1000
Alw21I	GWGCWC	2 cut(s)	8, 501
Alw26I	GTCTC	2 cut(s)	171, 999
AlwNI	CAGNNNCTG	1 cut(s)	743
Ama87I	CYCGRG	1 cut(s)	506
AoxI	GGCC	1 cut(s)	477
ApeKI	GCWGC	3 cut(s)	294, 629, 749
ApoI	RAATTY	1 cut(s)	685
Asp700I	GAANNNNTTC	1 cut(s)	285
AspLEI	GCGC	3 cut(s)	537, 730, 859
AspS9I	GGNCC	1 cut(s)	664
AsuHPI	GGTGA	2 cut(s)	464, 839
AvaI	CYCGRG	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	664
BanII	GRGCYC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	628, 660
BbsI	GAAGAC	3 cut(s)	53, 228, 263
Bbv12I	GWGCWC	2 cut(s)	8, 501
BbvI	GCAGC	3 cut(s)	306, 641, 761
BciVI	GTATCC	1 cut(s)	939
BclI	TGATCA	1 cut(s)	367
BcoDI	GTCTC	2 cut(s)	171, 999
BfaI	CTAG	4 cut(s)	9, 15, 548, 809
BfmI	CTRYAG	2 cut(s)	573, 744
BfoI	RGCGCY	1 cut(s)	731
BfuI	GTATCC	1 cut(s)	939
BglII	AGATCT	1 cut(s)	678
BisI	GCNGC	3 cut(s)	295, 630, 750
BlsI	GCNGC	3 cut(s)	296, 631, 751
BmcAI	AGTACT	2 cut(s)	643, 984
Bme18I	GGWCC	1 cut(s)	664
BmeT110I	CYCGRG	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	664
BmiI	GGNNCC	1 cut(s)	666
BmrI	ACTGGG	1 cut(s)	344
BmuI	ACTGGG	1 cut(s)	344
BpiI	GAAGAC	3 cut(s)	53, 228, 263
BpuEI	CTTGAG	2 cut(s)	654, 712
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	914
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	3 cut(s)	350, 480, 737
Bse8I	GATNNNNATC	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	914
BseGI	GGATG	1 cut(s)	501
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMII	CTCAG	4 cut(s)	141, 451, 730, 1010
BseNI	ACTGG	3 cut(s)	350, 480, 737
BseXI	GCAGC	3 cut(s)	306, 641, 761
BseYI	CCCAGC	1 cut(s)	732
BsgI	GTGCAG	1 cut(s)	395
BshFI	GGCC	1 cut(s)	479
BsiHKAI	GWGCWC	2 cut(s)	8, 501
BsiHKCI	CYCGRG	1 cut(s)	506
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	2 cut(s)	171, 999
BsmFI	GGGAC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	479
BsoBI	CYCGRG	1 cut(s)	506
Bsp1286I	GDGCHC	2 cut(s)	8, 501
Bsp143I	GATC	6 cut(s)	367, 454, 465, 678, 801, 845
Bsp19I	CCATGG	1 cut(s)	914
BspANI	GGCC	1 cut(s)	479
BspCNI	CTCAG	4 cut(s)	140, 450, 729, 1009
BspLI	GGNNCC	1 cut(s)	666
BsrI	ACTGG	3 cut(s)	350, 480, 737
BssECI	CCNNGG	1 cut(s)	914
BssMI	GATC	6 cut(s)	367, 454, 465, 678, 801, 845
BssT1I	CCWWGG	1 cut(s)	914
Bst4CI	ACNGT	2 cut(s)	45, 404
Bst6I	CTCTTC	3 cut(s)	76, 276, 308
BstC8I	GCNNGC	1 cut(s)	539
BstDEI	CTNAG	6 cut(s)	127, 181, 437, 462, 716, 996
BstDSI	CCRYGG	1 cut(s)	914
BstF5I	GGATG	1 cut(s)	501
BstH2I	RGCGCY	1 cut(s)	731
BstHHI	GCGC	3 cut(s)	537, 730, 859
BstKTI	GATC	6 cut(s)	370, 457, 468, 681, 804, 848
BstMAI	GTCTC	2 cut(s)	171, 999
BstMBI	GATC	6 cut(s)	367, 454, 465, 678, 801, 845
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 749
BstNSI	RCATGY	1 cut(s)	535
BstSFI	CTRYAG	2 cut(s)	573, 744
BstV1I	GCAGC	3 cut(s)	306, 641, 761
BstV2I	GAAGAC	3 cut(s)	53, 228, 263
BstX2I	RGATCY	1 cut(s)	678
BstXI	CCANNNNNNTGG	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	678
BsuI	GTATCC	1 cut(s)	939
BsuRI	GGCC	1 cut(s)	479
BtgI	CCRYGG	1 cut(s)	914
BtsCI	GGATG	1 cut(s)	501
BtsIMutI	CAGTG	4 cut(s)	473, 724, 855, 894
Cac8I	GCNNGC	1 cut(s)	539
CaiI	CAGNNNCTG	1 cut(s)	743
CfoI	GCGC	3 cut(s)	537, 730, 859
Cfr13I	GGNCC	1 cut(s)	664
CseI	GACGC	1 cut(s)	27
Csp6I	GTAC	4 cut(s)	581, 642, 863, 983
CviAII	CATG	6 cut(s)	48, 159, 257, 371, 532, 915
CviQI	GTAC	4 cut(s)	581, 642, 863, 983
DdeI	CTNAG	6 cut(s)	127, 181, 437, 462, 716, 996
DpnI	GATC	6 cut(s)	369, 456, 467, 680, 803, 847
DpnII	GATC	6 cut(s)	367, 454, 465, 678, 801, 845
EaeI	YGGCCR	1 cut(s)	477
Eam1104I	CTCTTC	3 cut(s)	76, 276, 308
EarI	CTCTTC	3 cut(s)	76, 276, 308
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	914
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	664
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	332
Eco88I	CYCGRG	1 cut(s)	506
EcoICRI	GAGCTC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	914
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	914
FaeI	CATG	6 cut(s)	51, 162, 260, 374, 535, 918
FalI	AAGNNNNNCTT	4 cut(s)	273, 305, 861, 893
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	6 cut(s)	47, 158, 256, 370, 531, 914
FauNDI	CATATG	1 cut(s)	990
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	3 cut(s)	295, 630, 750
FokI	GGATG	1 cut(s)	488
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	295, 630, 750
FspBI	CTAG	4 cut(s)	9, 15, 548, 809
FspI	TGCGCA	1 cut(s)	536
GlaI	GCGC	3 cut(s)	536, 729, 858
GluI	GCNGC	3 cut(s)	295, 630, 750
GsaI	CCCAGC	1 cut(s)	736
HaeII	RGCGCY	1 cut(s)	731
HaeIII	GGCC	1 cut(s)	479
HgaI	GACGC	1 cut(s)	27
HhaI	GCGC	3 cut(s)	537, 730, 859
Hin1II	CATG	6 cut(s)	51, 162, 260, 374, 535, 918
Hin6I	GCGC	3 cut(s)	535, 728, 857
HinP1I	GCGC	3 cut(s)	535, 728, 857
HincII	GTYRAC	1 cut(s)	904
HindII	GTYRAC	1 cut(s)	904
HinfI	GANTC	7 cut(s)	286, 382, 393, 592, 722, 784, 919
HphI	GGTGA	2 cut(s)	464, 839
Hpy166II	GTNNAC	3 cut(s)	92, 904, 1005
Hpy188I	TCNGA	2 cut(s)	108, 440
Hpy188III	TCNNGA	7 cut(s)	129, 252, 508, 662, 691, 788, 878
Hpy8I	GTNNAC	3 cut(s)	92, 904, 1005
HpyAV	CCTTC	2 cut(s)	443, 969
HpyCH4III	ACNGT	2 cut(s)	45, 404
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	5 cut(s)	294, 376, 611, 629, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 749
HpyF3I	CTNAG	6 cut(s)	127, 181, 437, 462, 716, 996
HpySE526I	ACGT	1 cut(s)	332
Hsp92II	CATG	6 cut(s)	51, 162, 260, 374, 535, 918
HspAI	GCGC	3 cut(s)	535, 728, 857
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	6 cut(s)	367, 454, 465, 678, 801, 845
LmnI	GCTCC	1 cut(s)	496
Lsp1109I	GCAGC	3 cut(s)	306, 641, 761
MaeI	CTAG	4 cut(s)	9, 15, 548, 809
MaeII	ACGT	1 cut(s)	332
MaeIII	GTNAC	5 cut(s)	39, 408, 489, 759, 909
MalI	GATC	6 cut(s)	369, 456, 467, 680, 803, 847
MboI	GATC	6 cut(s)	367, 454, 465, 678, 801, 845
MflI	RGATCY	1 cut(s)	678
MhlI	GDGCHC	2 cut(s)	8, 501
MluCI	AATT	4 cut(s)	244, 342, 559, 685
MnlI	CCTC	7 cut(s)	515, 577, 612, 678, 725, 817, 966
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	3 cut(s)	303, 519, 683
MslI	CAYNNNNRTG	1 cut(s)	46
MspA1I	CMGCKG	1 cut(s)	1000
Mva1269I	GAATGC	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	74, 749
NcoI	CCATGG	1 cut(s)	914
NdeI	CATATG	1 cut(s)	990
NdeII	GATC	6 cut(s)	367, 454, 465, 678, 801, 845
NlaIII	CATG	6 cut(s)	51, 162, 260, 374, 535, 918
NlaIV	GGNNCC	1 cut(s)	666
NmuCI	GTSAC	2 cut(s)	39, 408
NsbI	TGCGCA	1 cut(s)	536
NspI	RCATGY	1 cut(s)	535
PaeR7I	CTCGAG	1 cut(s)	506
PctI	GAATGC	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	7 cut(s)	286, 382, 393, 592, 722, 784, 919
PflMI	CCANNNNNTGG	1 cut(s)	356
PkrI	GCNGC	3 cut(s)	296, 631, 751
Psp124BI	GAGCTC	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	332
PspFI	CCCAGC	1 cut(s)	732
PspN4I	GGNNCC	1 cut(s)	666
PspPI	GGNCC	1 cut(s)	664
PstNI	CAGNNNCTG	1 cut(s)	743
PsuI	RGATCY	1 cut(s)	678
PvuII	CAGCTG	1 cut(s)	1000
RsaI	GTAC	4 cut(s)	582, 643, 864, 984
RsaNI	GTAC	4 cut(s)	581, 642, 863, 983
RseI	CAYNNNNRTG	1 cut(s)	46
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	3 cut(s)	303, 519, 683
SatI	GCNGC	3 cut(s)	295, 630, 750
Sau3AI	GATC	6 cut(s)	367, 454, 465, 678, 801, 845
Sau96I	GGNCC	1 cut(s)	664
ScaI	AGTACT	2 cut(s)	643, 984
SduI	GDGCHC	2 cut(s)	8, 501
SfcI	CTRYAG	2 cut(s)	573, 744
Sfr274I	CTCGAG	1 cut(s)	506
SinI	GGWCC	1 cut(s)	664
SlaI	CTCGAG	1 cut(s)	506
SmiMI	CAYNNNNRTG	1 cut(s)	46
SmlI	CTYRAG	3 cut(s)	506, 669, 691
SmoI	CTYRAG	3 cut(s)	506, 669, 691
Sse9I	AATT	4 cut(s)	244, 342, 559, 685
SspI	AATATT	1 cut(s)	444
SspMI	CTAG	4 cut(s)	9, 15, 548, 809
SstI	GAGCTC	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	914
TaaI	ACNGT	2 cut(s)	45, 404
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	3 cut(s)	507, 789, 885
TasI	AATT	4 cut(s)	244, 342, 559, 685
TatI	WGTACW	4 cut(s)	580, 641, 862, 982
TfiI	GAWTC	7 cut(s)	286, 382, 393, 592, 722, 784, 919
Tru1I	TTAA	3 cut(s)	303, 519, 683
Tru9I	TTAA	3 cut(s)	303, 519, 683
TscAI	CASTG	4 cut(s)	480, 724, 855, 901
TseFI	GTSAC	2 cut(s)	39, 408
TseI	GCWGC	3 cut(s)	294, 629, 749
Tsp45I	GTSAC	2 cut(s)	39, 408
TspDTI	ATGAA	6 cut(s)	263, 273, 294, 584, 630, 977
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	4 cut(s)	480, 724, 855, 901
Van91I	CCANNNNNTGG	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	664
XapI	RAATTY	1 cut(s)	685
XceI	RCATGY	1 cut(s)	535
XhoI	CTCGAG	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	4 cut(s)	9, 15, 548, 809
ZrmI	AGTACT	2 cut(s)	643, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.