Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016418

Physical Location & Seq

Genomic Coordinates Reverse (-)

12855852 .. 12857729

Gene Structure 1878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011811

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGGGAGAGTAAAACTTCAGATGAAGAGAATTGAGAATACCGCTAACAGACAGATCACTTTCTCAAAGAGGAAAAACGGACTTATTAAGAAAGCTTATGAACTGTCTGTTCTCTGTGATGTTGATGTAGCTCTCATCATGTTTTCTCCGTCTGGGAGACTTAGTCTATTCTCTGGCAATAAAAGCCCAGTTGGTGCAGATTTTGATCATGTGCAGGAGATTCAACAAGAAATCCTACACTGTAAGTCACAAATGGAAGAAGTGGAAAATCAACTCAGAATATTTGAAGGTGATCTCTCTAAGATCACAACACTGCCTGATATTGAGTTACGGGAGCAGATCCTCGAGAAAACTCTTAATCGTCTGTACATGCGCAAGCAAGTTCTAGGAGTGTATAATTCTTCCTCTGCTATAGCAGTACAACCACAGATTCATCTTCCTCCAAATGCAGATGAACTTGTGATTGCAGCAGGAAGTAGTACTACTCAACCCACTTATCTGGACCCTCAAGTTGAGATCCTAAATTTCTTGAGTGCAAATGGCTTTCTTCCCCGCAGTAGTGATTCAGCGCCCCAACCAGTTGCTGTAGTAGCACCAATGTTACCCCTTGATAGCCAAAACACGAATCTCGATGATGACATGATCAATCTAGCAAATGATTTTGAGGGTGAAAATAACAATAGGAGATCAGTAGTAGCGCAAGTACAACAAGAACATCTTGAAATCGAACAAGGCACTGATGTCAACTTGTTACCATGTAATCAGTTGTATCCTACAGGTACAATTTTGATGTGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

267

Amino Acids

29.68

Weight (kDa)

4.92

Isoelectric Point (pI)

53.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 55	2.1e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016418)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G427500_v2.0.a1 Prupe.1G427600_v2.0.a1
pyrus_communis	pycom08g07350
rosa_chinensis	RchiOBHm_Chr6g0295371 RchiOBHm_Chr6g0295381
rosa_laevigata	RLG00000011811
rosa_multiflora	Rmu_sc0003058.1_g000013 Rmu_sc0031171.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172550
rosa_rugosa	Rorug06G0250300
rosa_samantha	Rh6AG363500 Rh6BG371700 Rh6CG378100 Rh6DG364300
rosa_wichuraiana	Rw6G031730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	374
AciI	CCGC	2 cut(s)	42, 553
AclWI	GGATC	2 cut(s)	334, 511
AcsI	RAATTY	1 cut(s)	523
AfaI	GTAC	5 cut(s)	368, 420, 481, 705, 781
AgsI	TTSAA	3 cut(s)	224, 287, 722
AluBI	AGCT	2 cut(s)	95, 131
AluI	AGCT	2 cut(s)	95, 131
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	2 cut(s)	334, 511
AlwNI	CAGNNNCTG	1 cut(s)	584
Ama87I	CYCGRG	1 cut(s)	344
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	1 cut(s)	523
AspLEI	GCGC	3 cut(s)	375, 571, 700
AspS9I	GGNCC	1 cut(s)	502
AsuHPI	GGTGA	2 cut(s)	302, 680
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	502
BarI	GAAGNNNNNNTAC	2 cut(s)	466, 498
BbvI	GCAGC	1 cut(s)	479
BciVI	GTATCC	1 cut(s)	780
BclI	TGATCA	2 cut(s)	205, 642
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	2 cut(s)	386, 650
BfmI	CTRYAG	3 cut(s)	411, 585, 774
BfoI	RGCGCY	1 cut(s)	572
BfuI	GTATCC	1 cut(s)	780
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
BmcAI	AGTACT	1 cut(s)	481
Bme18I	GGWCC	1 cut(s)	502
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	1 cut(s)	504
BmrI	ACTGGG	1 cut(s)	182
BmuI	ACTGGG	1 cut(s)	182
BpuEI	CTTGAG	2 cut(s)	492, 550
BsaBI	GATNNNNATC	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bse1I	ACTGG	2 cut(s)	188, 578
Bse8I	GATNNNNATC	1 cut(s)	204
BseJI	GATNNNNATC	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	289
BseNI	ACTGG	2 cut(s)	188, 578
BseXI	GCAGC	1 cut(s)	479
BsgI	GTGCAG	2 cut(s)	216, 233
BsiHKCI	CYCGRG	1 cut(s)	344
BsmAI	GTCTC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	344
Bsp1407I	TGTACA	1 cut(s)	366
Bsp143I	GATC	8 cut(s)	54, 205, 292, 303, 339, 516, 642, 686
BspACI	CCGC	2 cut(s)	42, 553
BspCNI	CTCAG	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	504
BspPI	GGATC	2 cut(s)	334, 511
BsrGI	TGTACA	1 cut(s)	366
BsrI	ACTGG	2 cut(s)	188, 578
BssMI	GATC	8 cut(s)	54, 205, 292, 303, 339, 516, 642, 686
Bst4CI	ACNGT	2 cut(s)	105, 242
Bst6I	CTCTTC	1 cut(s)	20
BstAUI	TGTACA	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	377
BstDEI	CTNAG	3 cut(s)	161, 275, 300
BstH2I	RGCGCY	1 cut(s)	572
BstHHI	GCGC	3 cut(s)	375, 571, 700
BstKTI	GATC	8 cut(s)	57, 208, 295, 306, 342, 519, 645, 689
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	8 cut(s)	54, 205, 292, 303, 339, 516, 642, 686
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 590
BstNSI	RCATGY	1 cut(s)	373
BstSFI	CTRYAG	3 cut(s)	411, 585, 774
BstV1I	GCAGC	1 cut(s)	479
BstX2I	RGATCY	2 cut(s)	339, 516
BstXI	CCANNNNNNTGG	1 cut(s)	499
BstYI	RGATCY	2 cut(s)	339, 516
BsuI	GTATCC	1 cut(s)	780
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	3 cut(s)	238, 311, 735
Cac8I	GCNNGC	1 cut(s)	377
CaiI	CAGNNNCTG	1 cut(s)	584
CfoI	GCGC	3 cut(s)	375, 571, 700
Cfr13I	GGNCC	1 cut(s)	502
Csp6I	GTAC	5 cut(s)	367, 419, 480, 704, 780
CviAII	CATG	5 cut(s)	139, 209, 370, 640, 756
CviJI	RGCY	5 cut(s)	95, 131, 186, 543, 615
CviKI_1	RGCY	5 cut(s)	95, 131, 186, 543, 615
CviQI	GTAC	5 cut(s)	367, 419, 480, 704, 780
DdeI	CTNAG	3 cut(s)	161, 275, 300
DpnI	GATC	8 cut(s)	56, 207, 294, 305, 341, 518, 644, 688
DpnII	GATC	8 cut(s)	54, 205, 292, 303, 339, 516, 642, 686
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	502
Eco88I	CYCGRG	1 cut(s)	344
FaeI	CATG	5 cut(s)	142, 212, 373, 643, 759
FalI	AAGNNNNNCTT	2 cut(s)	702, 734
FatI	CATG	5 cut(s)	138, 208, 369, 639, 755
FauI	CCCGC	1 cut(s)	560
FbaI	TGATCA	2 cut(s)	205, 642
Fnu4HI	GCNGC	1 cut(s)	468
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	2 cut(s)	386, 650
FspI	TGCGCA	1 cut(s)	374
GlaI	GCGC	3 cut(s)	374, 570, 699
GluI	GCNGC	1 cut(s)	468
HaeII	RGCGCY	1 cut(s)	572
HhaI	GCGC	3 cut(s)	375, 571, 700
Hin1II	CATG	5 cut(s)	142, 212, 373, 643, 759
Hin6I	GCGC	3 cut(s)	373, 569, 698
HinP1I	GCGC	3 cut(s)	373, 569, 698
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	4 cut(s)	220, 430, 563, 625
HphI	GGTGA	2 cut(s)	302, 680
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	2 cut(s)	21, 278
Hpy188III	TCNNGA	5 cut(s)	346, 500, 529, 629, 719
Hpy8I	GTNNAC	1 cut(s)	745
HpyAV	CCTTC	1 cut(s)	281
HpyCH4III	ACNGT	2 cut(s)	105, 242
HpyCH4V	TGCA	6 cut(s)	197, 214, 449, 467, 536, 795
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 590
HpyF3I	CTNAG	3 cut(s)	161, 275, 300
Hsp92II	CATG	5 cut(s)	142, 212, 373, 643, 759
HspAI	GCGC	3 cut(s)	373, 569, 698
Ksp22I	TGATCA	2 cut(s)	205, 642
Kzo9I	GATC	8 cut(s)	54, 205, 292, 303, 339, 516, 642, 686
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	9 cut(s)	138, 159, 200, 201, 330, 456, 485, 591, 762
Lsp1109I	GCAGC	1 cut(s)	479
MaeI	CTAG	2 cut(s)	386, 650
MaeIII	GTNAC	4 cut(s)	246, 327, 600, 750
MalI	GATC	8 cut(s)	56, 207, 294, 305, 341, 518, 644, 688
MboI	GATC	8 cut(s)	54, 205, 292, 303, 339, 516, 642, 686
MboII	GAAGA	5 cut(s)	37, 269, 393, 428, 539
MflI	RGATCY	2 cut(s)	339, 516
MluCI	AATT	4 cut(s)	30, 397, 523, 783
MnlI	CCTC	6 cut(s)	63, 353, 415, 450, 516, 658
MseI	TTAA	2 cut(s)	87, 357
MwoI	GCNNNNNNNGC	2 cut(s)	183, 590
NdeII	GATC	8 cut(s)	54, 205, 292, 303, 339, 516, 642, 686
NlaIII	CATG	5 cut(s)	142, 212, 373, 643, 759
NlaIV	GGNNCC	1 cut(s)	504
NmuCI	GTSAC	1 cut(s)	246
NsbI	TGCGCA	1 cut(s)	374
NspI	RCATGY	1 cut(s)	373
PaeR7I	CTCGAG	1 cut(s)	344
PfeI	GAWTC	4 cut(s)	220, 430, 563, 625
PflFI	GACNNNGTC	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	504
PspPI	GGNCC	1 cut(s)	502
PstNI	CAGNNNCTG	1 cut(s)	584
PsuI	RGATCY	2 cut(s)	339, 516
PsyI	GACNNNGTC	1 cut(s)	162
RsaI	GTAC	5 cut(s)	368, 420, 481, 705, 781
RsaNI	GTAC	5 cut(s)	367, 419, 480, 704, 780
SaqAI	TTAA	2 cut(s)	87, 357
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	8 cut(s)	54, 205, 292, 303, 339, 516, 642, 686
Sau96I	GGNCC	1 cut(s)	502
ScaI	AGTACT	1 cut(s)	481
SetI	ASST	4 cut(s)	97, 133, 292, 781
SfcI	CTRYAG	3 cut(s)	411, 585, 774
Sfr274I	CTCGAG	1 cut(s)	344
SinI	GGWCC	1 cut(s)	502
SlaI	CTCGAG	1 cut(s)	344
SmlI	CTYRAG	3 cut(s)	344, 507, 529
SmoI	CTYRAG	3 cut(s)	344, 507, 529
Sse9I	AATT	4 cut(s)	30, 397, 523, 783
SsiI	CCGC	2 cut(s)	42, 553
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	2 cut(s)	386, 650
TaaI	ACNGT	2 cut(s)	105, 242
TaqI	TCGA	3 cut(s)	345, 630, 726
TasI	AATT	4 cut(s)	30, 397, 523, 783
TatI	WGTACW	4 cut(s)	366, 418, 479, 703
TfiI	GAWTC	4 cut(s)	220, 430, 563, 625
Tru1I	TTAA	2 cut(s)	87, 357
Tru9I	TTAA	2 cut(s)	87, 357
TscAI	CASTG	3 cut(s)	245, 318, 742
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	4 cut(s)	38, 114, 422, 468
TspGWI	ACGGA	2 cut(s)	93, 138
TspRI	CASTG	3 cut(s)	245, 318, 742
Tth111I	GACNNNGTC	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	502
XapI	RAATTY	1 cut(s)	523
XceI	RCATGY	1 cut(s)	373
XhoI	CTCGAG	1 cut(s)	344
XspI	CTAG	2 cut(s)	386, 650
ZrmI	AGTACT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.