Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016418

Physical Location & Seq

Genomic Coordinates Reverse (-)

12780696 .. 12783007

Gene Structure 2312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00172550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGGAGAGTAAAACTTCAAATGAAGAGAATTGAGAATACCGCTAACAGACAGATCACTTTCTCAAAGAGAAAAAACGGAATTATTAAGAAAGCTTATGAACTGTCTGTTCTCTGTGATGTTGATGTAGCTCTCATCATGTTTTCTCCGTCTGGGAGACCTAGTCTATTCTCTGGCAATAAAAGTATTGAAGATATTTTAGCACGGTATATCAATTATTCAAGACATGAACGACAGATTCTTAATATTCTTAATTTGAAGAGTGAAGCTAATCAAACGTTTCAAACAATTAGCCCAGTTAGTGCAGATTTTGATCATGCACAGGAGATTCAACAAGAAATCCTATACTGTAAGTCACAAATGGAAGAAGTGGAAAATCAACTCAGAATATTTGAAGGTGATCTCTCTGAGATTTCAACACTGCCCGATATTGAGTTACGGGAGCAGATCCTCGAGAAAACTCTTAATCGTCTATACATGTGTAAGCAAGTTCTAGGAGTGTGTAATTCTTCCTCTGCTATAGCAGTACAACCACAGGTACATCTTCCTCCAAATGCAGATGAACTTGTGATTGCAGCAGGAAGTAGTACTACTCAACCCACTTATCTGGACCCTCAAATTGAGATCCTAAATTTCTTGAGTGCAAATGGCTTTCTTCCTCTCAGTAGTGATCTAGCGCCCCAGCCAGTTGCTGTAGCAGCACCAACGTTAGTCCTTGATAGCCAAAACACGAATCTGGATGATGACATGATCAATCTAGCAAATGGTTTTGAGGGTGAAAATAACAATAGTAGATCAGTAGTAGCGCAAGTACAACAAGAACATCTTGAAATCCAACAAGGCACTGATGTCAATTTGTTACCATGGAATCAGTTGTATCCGACAGGAAATAACGCACCCATTCCTCCTTCACAGCAAAGACGACAACAAGTACTTCACATTTCTCAGCTGTTCACACGTCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

322

Amino Acids

36.11

Weight (kDa)

5.06

Isoelectric Point (pI)

61.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 55	6.3e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016418)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G427500_v2.0.a1 Prupe.1G427600_v2.0.a1
pyrus_communis	pycom08g07350
rosa_chinensis	RchiOBHm_Chr6g0295371 RchiOBHm_Chr6g0295381
rosa_laevigata	RLG00000011811
rosa_multiflora	Rmu_sc0003058.1_g000013 Rmu_sc0031171.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172550
rosa_rugosa	Rorug06G0250300
rosa_samantha	Rh6AG363500 Rh6BG371700 Rh6CG378100 Rh6DG364300
rosa_wichuraiana	Rw6G031730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	42
AclI	AACGTT	2 cut(s)	278, 707
AclWI	GGATC	2 cut(s)	442, 619
AcsI	RAATTY	1 cut(s)	631
AfaI	GTAC	5 cut(s)	528, 540, 589, 813, 933
AflIII	ACRYGT	2 cut(s)	477, 956
AgsI	TTSAA	9 cut(s)	20, 191, 222, 259, 284, 332, 395, 417, 830
AjiI	CACGTC	1 cut(s)	959
AluBI	AGCT	4 cut(s)	95, 131, 269, 949
AluI	AGCT	4 cut(s)	95, 131, 269, 949
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	2 cut(s)	442, 619
AlwNI	CAGNNNCTG	1 cut(s)	692
Ama87I	CYCGRG	1 cut(s)	452
ApeKI	GCWGC	2 cut(s)	575, 698
ApoI	RAATTY	1 cut(s)	631
AspLEI	GCGC	2 cut(s)	679, 808
AspS9I	GGNCC	1 cut(s)	610
AsuHPI	GGTGA	2 cut(s)	410, 788
AvaI	CYCGRG	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	610
BarI	GAAGNNNNNNTAC	2 cut(s)	574, 606
BbvI	GCAGC	2 cut(s)	587, 710
BciVI	GTATCC	1 cut(s)	888
BclI	TGATCA	2 cut(s)	313, 750
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	4 cut(s)	162, 494, 674, 758
BfmI	CTRYAG	2 cut(s)	519, 693
BfoI	RGCGCY	1 cut(s)	680
BfuI	GTATCC	1 cut(s)	888
BisI	GCNGC	2 cut(s)	576, 699
BlsI	GCNGC	2 cut(s)	577, 700
BmcAI	AGTACT	2 cut(s)	589, 933
Bme18I	GGWCC	1 cut(s)	610
BmeT110I	CYCGRG	1 cut(s)	452
BmgBI	CACGTC	1 cut(s)	959
BmgT120I	GGNCC	1 cut(s)	610
BmiI	GGNNCC	1 cut(s)	612
BmrI	ACTGGG	1 cut(s)	290
BmuI	ACTGGG	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	658
BsaBI	GATNNNNATC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	863
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bse1I	ACTGG	2 cut(s)	296, 686
Bse8I	GATNNNNATC	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	863
BseGI	GGATG	1 cut(s)	745
BseJI	GATNNNNATC	1 cut(s)	312
BseMI	GCAATG	2 cut(s)	414, 546
BseMII	CTCAG	4 cut(s)	397, 399, 676, 959
BseNI	ACTGG	2 cut(s)	296, 686
BseXI	GCAGC	2 cut(s)	587, 710
BseYI	CCCAGC	1 cut(s)	681
BsgI	GTGCAG	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	452
BsmAI	GTCTC	1 cut(s)	151
Bso31I	GGTCTC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	452
Bsp143I	GATC	8 cut(s)	54, 313, 400, 447, 624, 670, 750, 794
Bsp19I	CCATGG	1 cut(s)	863
BspACI	CCGC	1 cut(s)	42
BspCNI	CTCAG	4 cut(s)	396, 400, 675, 958
BspLI	GGNNCC	1 cut(s)	612
BspPI	GGATC	2 cut(s)	442, 619
BspTNI	GGTCTC	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	296, 686
BssECI	CCNNGG	1 cut(s)	863
BssMI	GATC	8 cut(s)	54, 313, 400, 447, 624, 670, 750, 794
BssT1I	CCWWGG	1 cut(s)	863
Bst4CI	ACNGT	3 cut(s)	105, 207, 350
Bst6I	CTCTTC	2 cut(s)	20, 254
BstDEI	CTNAG	4 cut(s)	383, 408, 662, 945
BstDSI	CCRYGG	1 cut(s)	863
BstF5I	GGATG	1 cut(s)	745
BstH2I	RGCGCY	1 cut(s)	680
BstHHI	GCGC	2 cut(s)	679, 808
BstKTI	GATC	8 cut(s)	57, 316, 403, 450, 627, 673, 753, 797
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	8 cut(s)	54, 313, 400, 447, 624, 670, 750, 794
BstMWI	GCNNNNNNNGC	1 cut(s)	698
BstNSI	RCATGY	1 cut(s)	481
BstSFI	CTRYAG	2 cut(s)	519, 693
BstV1I	GCAGC	2 cut(s)	587, 710
BstX2I	RGATCY	2 cut(s)	447, 624
BstXI	CCANNNNNNTGG	1 cut(s)	607
BstYI	RGATCY	2 cut(s)	447, 624
BsuI	GTATCC	1 cut(s)	888
BtgI	CCRYGG	1 cut(s)	863
BtrI	CACGTC	1 cut(s)	959
BtsCI	GGATG	1 cut(s)	745
BtsI	GCAGTG	1 cut(s)	419
BtsIMutI	CAGTG	2 cut(s)	419, 843
CaiI	CAGNNNCTG	1 cut(s)	692
CfoI	GCGC	2 cut(s)	679, 808
Cfr13I	GGNCC	1 cut(s)	610
Csp6I	GTAC	5 cut(s)	527, 539, 588, 812, 932
CviAII	CATG	6 cut(s)	139, 227, 317, 478, 748, 864
CviJI	RGCY	8 cut(s)	95, 131, 269, 294, 651, 685, 723, 949
CviKI_1	RGCY	8 cut(s)	95, 131, 269, 294, 651, 685, 723, 949
CviQI	GTAC	5 cut(s)	527, 539, 588, 812, 932
DdeI	CTNAG	4 cut(s)	383, 408, 662, 945
DpnI	GATC	8 cut(s)	56, 315, 402, 449, 626, 672, 752, 796
DpnII	GATC	8 cut(s)	54, 313, 400, 447, 624, 670, 750, 794
Eam1104I	CTCTTC	2 cut(s)	20, 254
EarI	CTCTTC	2 cut(s)	20, 254
Eco130I	CCWWGG	1 cut(s)	863
Eco31I	GGTCTC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	610
Eco88I	CYCGRG	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	863
ErhI	CCWWGG	1 cut(s)	863
FaeI	CATG	6 cut(s)	142, 230, 320, 481, 751, 867
FalI	AAGNNNNNCTT	2 cut(s)	810, 842
FatI	CATG	6 cut(s)	138, 226, 316, 477, 747, 863
FbaI	TGATCA	2 cut(s)	313, 750
Fnu4HI	GCNGC	2 cut(s)	576, 699
FokI	GGATG	1 cut(s)	752
Fsp4HI	GCNGC	2 cut(s)	576, 699
FspBI	CTAG	4 cut(s)	162, 494, 674, 758
GlaI	GCGC	2 cut(s)	678, 807
GluI	GCNGC	2 cut(s)	576, 699
GsaI	CCCAGC	1 cut(s)	685
HaeII	RGCGCY	1 cut(s)	680
HhaI	GCGC	2 cut(s)	679, 808
Hin1II	CATG	6 cut(s)	142, 230, 320, 481, 751, 867
Hin6I	GCGC	2 cut(s)	677, 806
HinP1I	GCGC	2 cut(s)	677, 806
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	4 cut(s)	238, 328, 733, 868
HphI	GGTGA	2 cut(s)	410, 788
Hpy166II	GTNNAC	1 cut(s)	954
Hpy188I	TCNGA	3 cut(s)	386, 409, 882
Hpy188III	TCNNGA	6 cut(s)	222, 454, 608, 637, 737, 827
Hpy8I	GTNNAC	1 cut(s)	954
HpyAV	CCTTC	2 cut(s)	389, 918
HpyCH4III	ACNGT	3 cut(s)	105, 207, 350
HpyCH4IV	ACGT	3 cut(s)	278, 707, 958
HpyCH4V	TGCA	5 cut(s)	305, 320, 557, 575, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	698
HpyF3I	CTNAG	4 cut(s)	383, 408, 662, 945
HpySE526I	ACGT	3 cut(s)	278, 707, 958
Hsp92II	CATG	6 cut(s)	142, 230, 320, 481, 751, 867
HspAI	GCGC	2 cut(s)	677, 806
Ksp22I	TGATCA	2 cut(s)	313, 750
Kzo9I	GATC	8 cut(s)	54, 313, 400, 447, 624, 670, 750, 794
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	2 cut(s)	587, 710
MaeI	CTAG	4 cut(s)	162, 494, 674, 758
MaeII	ACGT	3 cut(s)	278, 707, 958
MaeIII	GTNAC	3 cut(s)	354, 435, 858
MalI	GATC	8 cut(s)	56, 315, 402, 449, 626, 672, 752, 796
MboI	GATC	8 cut(s)	54, 313, 400, 447, 624, 670, 750, 794
MboII	GAAGA	7 cut(s)	37, 203, 271, 377, 501, 536, 647
MflI	RGATCY	2 cut(s)	447, 624
MluCI	AATT	9 cut(s)	30, 81, 214, 253, 288, 505, 618, 631, 853
MmeI	TCCRAC	2 cut(s)	859, 905
MnlI	CCTC	7 cut(s)	461, 523, 558, 624, 669, 766, 915
MseI	TTAA	4 cut(s)	87, 243, 252, 465
MspA1I	CMGCKG	1 cut(s)	949
MwoI	GCNNNNNNNGC	1 cut(s)	698
NcoI	CCATGG	1 cut(s)	863
NdeII	GATC	8 cut(s)	54, 313, 400, 447, 624, 670, 750, 794
NlaIII	CATG	6 cut(s)	142, 230, 320, 481, 751, 867
NlaIV	GGNNCC	1 cut(s)	612
NmuCI	GTSAC	1 cut(s)	354
NspI	RCATGY	1 cut(s)	481
PaeR7I	CTCGAG	1 cut(s)	452
PciI	ACATGT	1 cut(s)	477
PfeI	GAWTC	4 cut(s)	238, 328, 733, 868
PflFI	GACNNNGTC	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	577, 700
PscI	ACATGT	1 cut(s)	477
Psp1406I	AACGTT	2 cut(s)	278, 707
PspFI	CCCAGC	1 cut(s)	681
PspN4I	GGNNCC	1 cut(s)	612
PspPI	GGNCC	1 cut(s)	610
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	2 cut(s)	447, 624
PsyI	GACNNNGTC	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	949
RsaI	GTAC	5 cut(s)	528, 540, 589, 813, 933
RsaNI	GTAC	5 cut(s)	527, 539, 588, 812, 932
SaqAI	TTAA	4 cut(s)	87, 243, 252, 465
SatI	GCNGC	2 cut(s)	576, 699
Sau3AI	GATC	8 cut(s)	54, 313, 400, 447, 624, 670, 750, 794
Sau96I	GGNCC	1 cut(s)	610
ScaI	AGTACT	2 cut(s)	589, 933
SfcI	CTRYAG	2 cut(s)	519, 693
Sfr274I	CTCGAG	1 cut(s)	452
SinI	GGWCC	1 cut(s)	610
SlaI	CTCGAG	1 cut(s)	452
SmlI	CTYRAG	2 cut(s)	452, 637
SmoI	CTYRAG	2 cut(s)	452, 637
Sse9I	AATT	9 cut(s)	30, 81, 214, 253, 288, 505, 618, 631, 853
SsiI	CCGC	1 cut(s)	42
SspI	AATATT	2 cut(s)	247, 390
SspMI	CTAG	4 cut(s)	162, 494, 674, 758
StyI	CCWWGG	1 cut(s)	863
TaaI	ACNGT	3 cut(s)	105, 207, 350
TaiI	ACGT	3 cut(s)	281, 710, 961
TaqI	TCGA	1 cut(s)	453
TasI	AATT	9 cut(s)	30, 81, 214, 253, 288, 505, 618, 631, 853
TatI	WGTACW	4 cut(s)	526, 587, 811, 931
TfiI	GAWTC	4 cut(s)	238, 328, 733, 868
Tru1I	TTAA	4 cut(s)	87, 243, 252, 465
Tru9I	TTAA	4 cut(s)	87, 243, 252, 465
TscAI	CASTG	2 cut(s)	426, 850
TseFI	GTSAC	1 cut(s)	354
TseI	GCWGC	2 cut(s)	575, 698
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	4 cut(s)	38, 114, 243, 576
TspGWI	ACGGA	2 cut(s)	93, 138
TspRI	CASTG	2 cut(s)	426, 850
Tth111I	GACNNNGTC	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	610
XapI	RAATTY	1 cut(s)	631
XceI	RCATGY	1 cut(s)	481
XhoI	CTCGAG	1 cut(s)	452
XspI	CTAG	4 cut(s)	162, 494, 674, 758
ZrmI	AGTACT	2 cut(s)	589, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.