Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0016418

Physical Location & Seq

Genomic Coordinates Forward (+)

55809103 .. 55811383

Gene Structure 2281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G031730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGGAGAGTAAAACTTCAGATGAAGAGAATTGAGAATATCGCTAACAGACAGATCACTTTCTCAAAGAGAAAAAACGGACTTATTAAGAAAGCTTATGAACTGTATGTTCTCTGTGATGTTGATGTAGCTCTCATCATGTTTTCTCCGTCTTGGAGACTTAGTCTATTCTCTGGCAATAAAAGTATTGAAGACATTTTAGCACGATATATCAATTATTCAAGACATGAACGAATTCTTTGCAGCATTCTTAATAAGCTGAAGAGTGAAGCTAATCAAACGTTTCAAACAATTAGCCCAGTTAGTGGAGATTTTGATCATGTGCAGGAGATTCAACAAGAAATCCTATACTGTAAGTCACAAATGGAAGAAGTGGAAAATCAACTCAGAATATTTGAAGGTGATCTCTCTAAGATCACAACACTGGCCGATATTGAGTTACGGGAGCACATCCTCGAGAAAACTCTTAATCGTCTATACATGCGCAAGCAAGTTCTAGGAGTGTGTAATTCTTCCTCTGCTATAGCAGTACAACCACAGATTCATCTTCCTCCAAATGCAGATGAACTTGTGATTGCAGCAGGAAGTAGTACTACTCAACCCACTTATCTGGACCCTCAAGTTGAGATCTTAAATTTCTTGAGTGCAAATGGCTTTCTTCCCCTCAGCAGTGATTCAGCGCCCCAGCCAGTTGCTGTAGCAGCACCGATGTTACCCTTTGATAGCCAAAACACGAATCTCGATGATGATATGATCAATCTAGCAAATGGTTTTGAGGGTGAAAATAACAATAGGAGATCAGTAGTAGCGCAAGTACAACAAGAATATCTTGAAATCGAACAAGGCACTGATGTCAACTTGTTACCATGGAATCAGTTGTATCCCACAGGAAATAACGCACCCATTCCTCCTTCACAGCAAAGACGACAACAAGTACTTCATATGTCTCAGCTGTTCACACATCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

323

Amino Acids

36.61

Weight (kDa)

5.46

Isoelectric Point (pI)

61.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 54	2.5e-22	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016418)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G427500_v2.0.a1 Prupe.1G427600_v2.0.a1
pyrus_communis	pycom08g07350
rosa_chinensis	RchiOBHm_Chr6g0295371 RchiOBHm_Chr6g0295381
rosa_laevigata	RLG00000011811
rosa_multiflora	Rmu_sc0003058.1_g000013 Rmu_sc0031171.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172550
rosa_rugosa	Rorug06G0250300
rosa_samantha	Rh6AG363500 Rh6BG371700 Rh6CG378100 Rh6DG364300
rosa_wichuraiana	Rw6G031730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	485
AccB7I	CCANNNNNTGG	1 cut(s)	305
AclI	AACGTT	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	2 cut(s)	234, 634
AcuI	CTGAAG	1 cut(s)	281
AfaI	GTAC	4 cut(s)	531, 592, 816, 936
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	6 cut(s)	191, 222, 287, 335, 398, 833
AluBI	AGCT	5 cut(s)	95, 131, 259, 272, 952
AluI	AGCT	5 cut(s)	95, 131, 259, 272, 952
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	2 cut(s)	151, 951
AlwNI	CAGNNNCTG	1 cut(s)	695
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	3 cut(s)	243, 578, 701
ApoI	RAATTY	2 cut(s)	234, 634
Asp700I	GAANNNNTTC	1 cut(s)	234
AspLEI	GCGC	3 cut(s)	486, 682, 811
AspS9I	GGNCC	1 cut(s)	613
AsuHPI	GGTGA	2 cut(s)	413, 791
AvaI	CYCGRG	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	613
BarI	GAAGNNNNNNTAC	2 cut(s)	577, 609
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	450
BbvCI	CCTCAGC	1 cut(s)	665
BbvI	GCAGC	3 cut(s)	255, 590, 713
BcgI	CGANNNNNNTGC	2 cut(s)	222, 256
BciVI	GTATCC	1 cut(s)	891
BclI	TGATCA	2 cut(s)	316, 753
BcoDI	GTCTC	2 cut(s)	151, 951
BfaI	CTAG	2 cut(s)	497, 761
BfmI	CTRYAG	2 cut(s)	522, 696
BfoI	RGCGCY	1 cut(s)	683
BfuI	GTATCC	1 cut(s)	891
BglII	AGATCT	1 cut(s)	627
BisI	GCNGC	3 cut(s)	244, 579, 702
BlsI	GCNGC	3 cut(s)	245, 580, 703
BmcAI	AGTACT	2 cut(s)	592, 936
Bme18I	GGWCC	1 cut(s)	613
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	613
BmiI	GGNNCC	1 cut(s)	615
BmrI	ACTGGG	1 cut(s)	293
BmuI	ACTGGG	1 cut(s)	293
BpiI	GAAGAC	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	665
BpuEI	CTTGAG	2 cut(s)	603, 661
BsaBI	GATNNNNATC	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	866
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	3 cut(s)	299, 429, 689
Bse8I	GATNNNNATC	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	866
BseGI	GGATG	1 cut(s)	450
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	3 cut(s)	400, 679, 962
BseNI	ACTGG	3 cut(s)	299, 429, 689
BseXI	GCAGC	3 cut(s)	255, 590, 713
BseYI	CCCAGC	1 cut(s)	684
BsgI	GTGCAG	1 cut(s)	344
BshFI	GGCC	1 cut(s)	428
BsiHKAI	GWGCWC	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	455
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	2 cut(s)	151, 951
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	428
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	7 cut(s)	54, 316, 403, 414, 627, 753, 797
Bsp19I	CCATGG	1 cut(s)	866
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	3 cut(s)	399, 678, 961
BspLI	GGNNCC	1 cut(s)	615
BsrI	ACTGG	3 cut(s)	299, 429, 689
BssECI	CCNNGG	1 cut(s)	866
BssMI	GATC	7 cut(s)	54, 316, 403, 414, 627, 753, 797
BssT1I	CCWWGG	1 cut(s)	866
Bst4CI	ACNGT	2 cut(s)	105, 353
Bst6I	CTCTTC	2 cut(s)	20, 257
BstC8I	GCNNGC	1 cut(s)	488
BstDEI	CTNAG	5 cut(s)	161, 386, 411, 665, 948
BstDSI	CCRYGG	1 cut(s)	866
BstF5I	GGATG	1 cut(s)	450
BstH2I	RGCGCY	1 cut(s)	683
BstHHI	GCGC	3 cut(s)	486, 682, 811
BstKTI	GATC	7 cut(s)	57, 319, 406, 417, 630, 756, 800
BstMAI	GTCTC	2 cut(s)	151, 951
BstMBI	GATC	7 cut(s)	54, 316, 403, 414, 627, 753, 797
BstMWI	GCNNNNNNNGC	1 cut(s)	701
BstNSI	RCATGY	1 cut(s)	484
BstSFI	CTRYAG	2 cut(s)	522, 696
BstV1I	GCAGC	3 cut(s)	255, 590, 713
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	627
BstXI	CCANNNNNNTGG	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	627
BsuI	GTATCC	1 cut(s)	891
BsuRI	GGCC	1 cut(s)	428
BtgI	CCRYGG	1 cut(s)	866
BtsCI	GGATG	1 cut(s)	450
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	3 cut(s)	422, 676, 846
Cac8I	GCNNGC	1 cut(s)	488
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	3 cut(s)	486, 682, 811
Cfr13I	GGNCC	1 cut(s)	613
Csp6I	GTAC	4 cut(s)	530, 591, 815, 935
CviAII	CATG	5 cut(s)	139, 227, 320, 481, 867
CviQI	GTAC	4 cut(s)	530, 591, 815, 935
DdeI	CTNAG	5 cut(s)	161, 386, 411, 665, 948
DpnI	GATC	7 cut(s)	56, 318, 405, 416, 629, 755, 799
DpnII	GATC	7 cut(s)	54, 316, 403, 414, 627, 753, 797
EaeI	YGGCCR	1 cut(s)	426
Eam1104I	CTCTTC	2 cut(s)	20, 257
EarI	CTCTTC	2 cut(s)	20, 257
Eco130I	CCWWGG	1 cut(s)	866
Eco47I	GGWCC	1 cut(s)	613
Eco57I	CTGAAG	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	455
EcoRI	GAATTC	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	866
ErhI	CCWWGG	1 cut(s)	866
FaeI	CATG	5 cut(s)	142, 230, 323, 484, 870
FalI	AAGNNNNNCTT	2 cut(s)	813, 845
FatI	CATG	5 cut(s)	138, 226, 319, 480, 866
FauNDI	CATATG	1 cut(s)	942
FbaI	TGATCA	2 cut(s)	316, 753
Fnu4HI	GCNGC	3 cut(s)	244, 579, 702
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	3 cut(s)	244, 579, 702
FspBI	CTAG	2 cut(s)	497, 761
FspI	TGCGCA	1 cut(s)	485
GlaI	GCGC	3 cut(s)	485, 681, 810
GluI	GCNGC	3 cut(s)	244, 579, 702
GsaI	CCCAGC	1 cut(s)	688
HaeII	RGCGCY	1 cut(s)	683
HaeIII	GGCC	1 cut(s)	428
HhaI	GCGC	3 cut(s)	486, 682, 811
Hin1II	CATG	5 cut(s)	142, 230, 323, 484, 870
Hin6I	GCGC	3 cut(s)	484, 680, 809
HinP1I	GCGC	3 cut(s)	484, 680, 809
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	5 cut(s)	331, 541, 674, 736, 871
HphI	GGTGA	2 cut(s)	413, 791
Hpy166II	GTNNAC	2 cut(s)	856, 957
Hpy188I	TCNGA	2 cut(s)	21, 389
Hpy188III	TCNNGA	6 cut(s)	222, 457, 611, 640, 740, 830
Hpy8I	GTNNAC	2 cut(s)	856, 957
HpyAV	CCTTC	2 cut(s)	392, 921
HpyCH4III	ACNGT	2 cut(s)	105, 353
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	5 cut(s)	243, 325, 560, 578, 647
HpyF10VI	GCNNNNNNNGC	1 cut(s)	701
HpyF3I	CTNAG	5 cut(s)	161, 386, 411, 665, 948
HpySE526I	ACGT	1 cut(s)	281
Hsp92II	CATG	5 cut(s)	142, 230, 323, 484, 870
HspAI	GCGC	3 cut(s)	484, 680, 809
Ksp22I	TGATCA	2 cut(s)	316, 753
Kzo9I	GATC	7 cut(s)	54, 316, 403, 414, 627, 753, 797
LmnI	GCTCC	1 cut(s)	445
LpnPI	CCDG	9 cut(s)	159, 311, 312, 410, 567, 596, 698, 702, 873
Lsp1109I	GCAGC	3 cut(s)	255, 590, 713
MaeI	CTAG	2 cut(s)	497, 761
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	4 cut(s)	357, 438, 711, 861
MalI	GATC	7 cut(s)	56, 318, 405, 416, 629, 755, 799
MboI	GATC	7 cut(s)	54, 316, 403, 414, 627, 753, 797
MboII	GAAGA	7 cut(s)	37, 203, 274, 380, 504, 539, 650
MflI	RGATCY	1 cut(s)	627
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	6 cut(s)	30, 214, 234, 291, 508, 634
MnlI	CCTC	7 cut(s)	464, 526, 561, 627, 674, 769, 918
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	4 cut(s)	87, 252, 468, 632
MspA1I	CMGCKG	1 cut(s)	952
Mva1269I	GAATGC	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	701
NcoI	CCATGG	1 cut(s)	866
NdeI	CATATG	1 cut(s)	942
NdeII	GATC	7 cut(s)	54, 316, 403, 414, 627, 753, 797
NlaIII	CATG	5 cut(s)	142, 230, 323, 484, 870
NlaIV	GGNNCC	1 cut(s)	615
NmuCI	GTSAC	1 cut(s)	357
NsbI	TGCGCA	1 cut(s)	485
NspI	RCATGY	1 cut(s)	484
PaeR7I	CTCGAG	1 cut(s)	455
PctI	GAATGC	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	5 cut(s)	331, 541, 674, 736, 871
PflFI	GACNNNGTC	1 cut(s)	162
PflMI	CCANNNNNTGG	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	245, 580, 703
Psp1406I	AACGTT	1 cut(s)	281
PspFI	CCCAGC	1 cut(s)	684
PspN4I	GGNNCC	1 cut(s)	615
PspPI	GGNCC	1 cut(s)	613
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	627
PsyI	GACNNNGTC	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	952
RsaI	GTAC	4 cut(s)	531, 592, 816, 936
RsaNI	GTAC	4 cut(s)	530, 591, 815, 935
SaqAI	TTAA	4 cut(s)	87, 252, 468, 632
SatI	GCNGC	3 cut(s)	244, 579, 702
Sau3AI	GATC	7 cut(s)	54, 316, 403, 414, 627, 753, 797
Sau96I	GGNCC	1 cut(s)	613
ScaI	AGTACT	2 cut(s)	592, 936
SduI	GDGCHC	1 cut(s)	450
SetI	ASST	7 cut(s)	97, 133, 261, 274, 284, 403, 954
SfcI	CTRYAG	2 cut(s)	522, 696
Sfr274I	CTCGAG	1 cut(s)	455
SinI	GGWCC	1 cut(s)	613
SlaI	CTCGAG	1 cut(s)	455
SmlI	CTYRAG	3 cut(s)	455, 618, 640
SmoI	CTYRAG	3 cut(s)	455, 618, 640
Sse9I	AATT	6 cut(s)	30, 214, 234, 291, 508, 634
SspI	AATATT	1 cut(s)	393
SspMI	CTAG	2 cut(s)	497, 761
StyI	CCWWGG	1 cut(s)	866
TaaI	ACNGT	2 cut(s)	105, 353
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	3 cut(s)	456, 741, 837
TasI	AATT	6 cut(s)	30, 214, 234, 291, 508, 634
TatI	WGTACW	4 cut(s)	529, 590, 814, 934
TfiI	GAWTC	5 cut(s)	331, 541, 674, 736, 871
Tru1I	TTAA	4 cut(s)	87, 252, 468, 632
Tru9I	TTAA	4 cut(s)	87, 252, 468, 632
TscAI	CASTG	3 cut(s)	429, 676, 853
TseFI	GTSAC	1 cut(s)	357
TseI	GCWGC	3 cut(s)	243, 578, 701
Tsp45I	GTSAC	1 cut(s)	357
TspDTI	ATGAA	6 cut(s)	38, 114, 243, 533, 579, 929
TspGWI	ACGGA	2 cut(s)	93, 138
TspRI	CASTG	3 cut(s)	429, 676, 853
Tth111I	GACNNNGTC	1 cut(s)	162
Van91I	CCANNNNNTGG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	613
XapI	RAATTY	2 cut(s)	234, 634
XceI	RCATGY	1 cut(s)	484
XhoI	CTCGAG	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	2 cut(s)	497, 761
ZrmI	AGTACT	2 cut(s)	592, 936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.