RchiOBHm_Chr6g0295371

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016418
Physical Location & Seq
Forward (+)
57379992 .. 57380783
792 bp
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UTR
Exon/CDS
Intron
PRQ26505

Sequence Viewer

Length: 231 bp
ATGGGGAGAGTAAAACTTCAGATGAAGAGAATTGAGAATACTGCTAACAGACAGATCACTTTCTCAAAGAGAAAAAACGGACTTATTAAAAAAGCTTATGAACTGTCTGTTCTCTGTGATGTTGATGTAGCTCTCATCATGTTTTCTCCGTCTAGGAGACTTAGTCTATTCTCTGGCAATAAAAGCCCAGTTAGTGCAGATTTTGATCATGTGCAGGTAGGTGCTTCATGA

Protein Analysis

76

Amino Acids

8.5

Weight (kDa)

10.21

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 55 1.2e-25 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 205
AluBI AGCT 2 cut(s) 95, 131
AluI AGCT 2 cut(s) 95, 131
Alw26I GTCTC 1 cut(s) 151
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 1 cut(s) 153
BfuAI ACCTGC 1 cut(s) 205
BmrI ACTGGG 1 cut(s) 182
BmuI ACTGGG 1 cut(s) 182
BsaBI GATNNNNATC 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bse1I ACTGG 1 cut(s) 188
Bse8I GATNNNNATC 1 cut(s) 204
BseJI GATNNNNATC 1 cut(s) 204
BseNI ACTGG 1 cut(s) 188
BsgI GTGCAG 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 151
Bsp143I GATC 2 cut(s) 54, 205
BspHI TCATGA 1 cut(s) 227
BspMI ACCTGC 1 cut(s) 205
BsrI ACTGG 1 cut(s) 188
BssMI GATC 2 cut(s) 54, 205
Bst4CI ACNGT 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 161
BstKTI GATC 2 cut(s) 57, 208
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 2 cut(s) 54, 205
BstMWI GCNNNNNNNGC 1 cut(s) 183
BveI ACCTGC 1 cut(s) 205
CciI TCATGA 1 cut(s) 227
CviAII CATG 3 cut(s) 139, 209, 228
CviJI RGCY 3 cut(s) 95, 131, 186
CviKI_1 RGCY 3 cut(s) 95, 131, 186
DdeI CTNAG 1 cut(s) 161
DpnI GATC 2 cut(s) 56, 207
DpnII GATC 2 cut(s) 54, 205
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
FaeI CATG 3 cut(s) 142, 212, 231
FaiI YATR 4 cut(s) 99, 140, 210, 229
FatI CATG 3 cut(s) 138, 208, 227
FbaI TGATCA 1 cut(s) 205
FspBI CTAG 1 cut(s) 153
FspEI CC 8 cut(s) 63, 139, 159, 162, 200, 200, 201, 204
Hin1II CATG 3 cut(s) 142, 212, 231
HindIII AAGCTT 1 cut(s) 93
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 228
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 197, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 1 cut(s) 161
Hsp92II CATG 3 cut(s) 142, 212, 231
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 54, 205
LpnPI CCDG 3 cut(s) 159, 200, 201
MaeI CTAG 1 cut(s) 153
MalI GATC 2 cut(s) 56, 207
MboI GATC 2 cut(s) 54, 205
MboII GAAGA 1 cut(s) 37
MluCI AATT 1 cut(s) 30
MseI TTAA 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 183
NdeII GATC 2 cut(s) 54, 205
NlaIII CATG 3 cut(s) 142, 212, 231
PagI TCATGA 1 cut(s) 227
PflFI GACNNNGTC 1 cut(s) 162
PsyI GACNNNGTC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 87
Sau3AI GATC 2 cut(s) 54, 205
SetI ASST 4 cut(s) 97, 133, 219, 223
SgeI CNNG 6 cut(s) 151, 165, 186, 200, 221, 227
Sse9I AATT 1 cut(s) 30
SspMI CTAG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 105
TasI AATT 1 cut(s) 30
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TspDTI ATGAA 3 cut(s) 38, 114, 216
TspGWI ACGGA 2 cut(s) 93, 138
Tth111I GACNNNGTC 1 cut(s) 162
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.