Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016418

Physical Location & Seq

Genomic Coordinates Forward (+)

57380894 .. 57382209

Gene Structure 1316 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26506

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAAGAAGTGGAAAATCAACTCAGAATATTTGAAGGTGATCTCTCTAAGATCACAACACTGCCCGATATTGAGTTACTGGAGCAGATCCTCGAGAAAACTCTTAATCGTCTATACATGTGCAAGCAAGTTCTAGGAGTGTGTAATTCTTCCTCTGCTATAGCAGTACAACCACAGATTCATCTTCCTCCAAATGCAGATGAACTTGTGATTGCAGCAGGAAGTAGTACTACTCAACCCACTTATCTGGACCCTCAAGTTGAGATCCTAAATTTCTTGAGTGCAAATGGCTTTCTTCCCCTCAGTAGTGATTCAGCGCCCCAACCAGTTGCTGTAGTAGCACCAATGTTACCCCTTGATAGCCAAAACACGAATCTCGATGATGACATGATCAATCTAGCAAATGGTTTTGAGGGTGAAAATAACAATAGGAGATCAATAGTAGCGCAAGTACAACAAGAACATCTTGAAATCGAACAAGGCACTGATGTCAACTTGTTACAATGGAATCAGTTGTATCCTACAGGAAATAACGCACCCATTCCTCCTTCACAGCAAAGACGACAACAAGTACTTCATATGTCTCAGCTGTTCACACATCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04064 ko04371 ko04620 ko04624 ko04722 ko04921 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 ko05202 ko05418 map04010 map04013 map04022 map04064 map04371 map04620 map04624 map04722 map04921 map05133 map05140 map05142 map05145 map05152 map05162 map05169 map05202 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

202

Amino Acids

22.45

Weight (kDa)

4.36

Isoelectric Point (pI)

58.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016418)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G427500_v2.0.a1 Prupe.1G427600_v2.0.a1
pyrus_communis	pycom08g07350
rosa_chinensis	RchiOBHm_Chr6g0295371 RchiOBHm_Chr6g0295381
rosa_laevigata	RLG00000011811
rosa_multiflora	Rmu_sc0003058.1_g000013 Rmu_sc0031171.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172550
rosa_rugosa	Rorug06G0250300
rosa_samantha	Rh6AG363500 Rh6BG371700 Rh6CG378100 Rh6DG364300
rosa_wichuraiana	Rw6G031730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	82, 259
AcsI	RAATTY	1 cut(s)	271
AfaI	GTAC	4 cut(s)	168, 229, 453, 573
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	35, 470
AluBI	AGCT	1 cut(s)	589
AluI	AGCT	1 cut(s)	589
Alw26I	GTCTC	1 cut(s)	588
AlwI	GGATC	2 cut(s)	82, 259
AlwNI	CAGNNNCTG	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	271
AspLEI	GCGC	2 cut(s)	319, 448
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	2 cut(s)	50, 428
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	250
BarI	GAAGNNNNNNTAC	2 cut(s)	214, 246
BbvI	GCAGC	1 cut(s)	227
BciVI	GTATCC	1 cut(s)	528
BclI	TGATCA	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	588
BfaI	CTAG	2 cut(s)	134, 398
BfmI	CTRYAG	3 cut(s)	159, 333, 522
BfoI	RGCGCY	1 cut(s)	320
BfuI	GTATCC	1 cut(s)	528
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
BmcAI	AGTACT	2 cut(s)	229, 573
Bme18I	GGWCC	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	101
BpuEI	CTTGAG	2 cut(s)	240, 298
Bse1I	ACTGG	2 cut(s)	84, 326
BseMII	CTCAG	3 cut(s)	37, 316, 599
BseNI	ACTGG	2 cut(s)	84, 326
BseXI	GCAGC	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	588
BsoBI	CYCGRG	1 cut(s)	92
Bsp143I	GATC	6 cut(s)	40, 51, 87, 264, 390, 434
BspCNI	CTCAG	3 cut(s)	36, 315, 598
BspLI	GGNNCC	1 cut(s)	252
BspPI	GGATC	2 cut(s)	82, 259
BsrI	ACTGG	2 cut(s)	84, 326
BssMI	GATC	6 cut(s)	40, 51, 87, 264, 390, 434
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	4 cut(s)	23, 48, 302, 585
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	2 cut(s)	319, 448
BstKTI	GATC	6 cut(s)	43, 54, 90, 267, 393, 437
BstMAI	GTCTC	1 cut(s)	588
BstMBI	GATC	6 cut(s)	40, 51, 87, 264, 390, 434
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	121
BstSFI	CTRYAG	3 cut(s)	159, 333, 522
BstV1I	GCAGC	1 cut(s)	227
BstX2I	RGATCY	2 cut(s)	87, 264
BstXI	CCANNNNNNTGG	1 cut(s)	247
BstYI	RGATCY	2 cut(s)	87, 264
BsuI	GTATCC	1 cut(s)	528
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	2 cut(s)	59, 483
Cac8I	GCNNGC	1 cut(s)	125
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	2 cut(s)	319, 448
Cfr13I	GGNCC	1 cut(s)	250
Csp6I	GTAC	4 cut(s)	167, 228, 452, 572
CviAII	CATG	2 cut(s)	118, 388
CviJI	RGCY	3 cut(s)	291, 363, 589
CviKI_1	RGCY	3 cut(s)	291, 363, 589
CviQI	GTAC	4 cut(s)	167, 228, 452, 572
DdeI	CTNAG	4 cut(s)	23, 48, 302, 585
DpnI	GATC	6 cut(s)	42, 53, 89, 266, 392, 436
DpnII	GATC	6 cut(s)	40, 51, 87, 264, 390, 434
Eco47I	GGWCC	1 cut(s)	250
Eco88I	CYCGRG	1 cut(s)	92
FaeI	CATG	2 cut(s)	121, 391
FaiI	YATR	7 cut(s)	115, 119, 161, 389, 579, 581, 607
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FatI	CATG	2 cut(s)	117, 387
FauNDI	CATATG	1 cut(s)	579
FbaI	TGATCA	1 cut(s)	390
Fnu4HI	GCNGC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	2 cut(s)	134, 398
GlaI	GCGC	2 cut(s)	318, 447
GluI	GCNGC	1 cut(s)	216
GsuI	CTGGAG	1 cut(s)	101
HaeII	RGCGCY	1 cut(s)	320
HhaI	GCGC	2 cut(s)	319, 448
Hin1II	CATG	2 cut(s)	121, 391
Hin6I	GCGC	2 cut(s)	317, 446
HinP1I	GCGC	2 cut(s)	317, 446
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HinfI	GANTC	4 cut(s)	178, 311, 373, 508
HphI	GGTGA	2 cut(s)	50, 428
Hpy166II	GTNNAC	2 cut(s)	493, 594
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	5 cut(s)	94, 248, 277, 377, 467
Hpy8I	GTNNAC	2 cut(s)	493, 594
HpyAV	CCTTC	2 cut(s)	29, 558
HpyCH4V	TGCA	4 cut(s)	123, 197, 215, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	4 cut(s)	23, 48, 302, 585
Hsp92II	CATG	2 cut(s)	121, 391
HspAI	GCGC	2 cut(s)	317, 446
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	6 cut(s)	40, 51, 87, 264, 390, 434
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	5 cut(s)	65, 204, 233, 339, 510
Lsp1109I	GCAGC	1 cut(s)	227
MaeI	CTAG	2 cut(s)	134, 398
MaeIII	GTNAC	3 cut(s)	75, 348, 498
MalI	GATC	6 cut(s)	42, 53, 89, 266, 392, 436
MboI	GATC	6 cut(s)	40, 51, 87, 264, 390, 434
MboII	GAAGA	4 cut(s)	17, 141, 176, 287
MflI	RGATCY	2 cut(s)	87, 264
MluCI	AATT	2 cut(s)	145, 271
MnlI	CCTC	7 cut(s)	101, 163, 198, 264, 311, 406, 555
MseI	TTAA	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	589
MwoI	GCNNNNNNNGC	1 cut(s)	338
NdeI	CATATG	1 cut(s)	579
NdeII	GATC	6 cut(s)	40, 51, 87, 264, 390, 434
NlaIII	CATG	2 cut(s)	121, 391
NlaIV	GGNNCC	1 cut(s)	252
NspI	RCATGY	1 cut(s)	121
PaeR7I	CTCGAG	1 cut(s)	92
PciI	ACATGT	1 cut(s)	117
PfeI	GAWTC	4 cut(s)	178, 311, 373, 508
PkrI	GCNGC	1 cut(s)	217
PscI	ACATGT	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	87, 264
PvuII	CAGCTG	1 cut(s)	589
RsaI	GTAC	4 cut(s)	168, 229, 453, 573
RsaNI	GTAC	4 cut(s)	167, 228, 452, 572
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	6 cut(s)	40, 51, 87, 264, 390, 434
Sau96I	GGNCC	1 cut(s)	250
ScaI	AGTACT	2 cut(s)	229, 573
SetI	ASST	2 cut(s)	40, 591
SfcI	CTRYAG	3 cut(s)	159, 333, 522
Sfr274I	CTCGAG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	250
SlaI	CTCGAG	1 cut(s)	92
SmlI	CTYRAG	3 cut(s)	92, 255, 277
SmoI	CTYRAG	3 cut(s)	92, 255, 277
Sse9I	AATT	2 cut(s)	145, 271
SspI	AATATT	1 cut(s)	30
SspMI	CTAG	2 cut(s)	134, 398
TaqI	TCGA	3 cut(s)	93, 378, 474
TasI	AATT	2 cut(s)	145, 271
TatI	WGTACW	4 cut(s)	166, 227, 451, 571
TfiI	GAWTC	4 cut(s)	178, 311, 373, 508
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	2 cut(s)	66, 490
TseI	GCWGC	1 cut(s)	215
TspDTI	ATGAA	3 cut(s)	170, 216, 566
TspRI	CASTG	2 cut(s)	66, 490
VpaK11BI	GGWCC	1 cut(s)	250
XapI	RAATTY	1 cut(s)	271
XceI	RCATGY	1 cut(s)	121
XhoI	CTCGAG	1 cut(s)	92
XspI	CTAG	2 cut(s)	134, 398
ZrmI	AGTACT	2 cut(s)	229, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.