Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0016418

Physical Location & Seq

Genomic Coordinates Forward (+)

56474586 .. 56478059

Gene Structure 3474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG378100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGATTGTATTGAATCGCCGGCAACTATCCCATTATAGTACTAACTCTTTATTTGGTGTCACTGTTCTAATGACATGCTGTCTCTGCAGCCCAGTTAGTGCAGATTTTGATCATGTGCAGGAGATTCAACAAGAAATCCTATACTGTAAGTCACAAATGGAAGAAGTGGAAAATCAACTCAGAATATTTGAAGGTGATCTCTCTAAGATCACAACACTGCCCGATATTGAGTTACGGGAGCAGATCCTCGAGAAAACTCTTAATCGTCTATACATGCGCAAGCAAGTTCTAGGAGTGTGTAATTCTTCCTCTGCTATAGCAGTACAACCACAGATTCATCTTCCTCCAAATGCAGATGAACTTGTGATTGCAGCAGGAAGTAGTACTACTCAACCCACTTATCTGGACCCTCAAGTTGAGATCCTAAATTTCTTGAGTGCAAATGGCTTTCTTCCCCTCAGTAGTGATTCAGCGCCCCAACCAATTGCTGTAGTAGCACCAATGTTACCCCTTGATAGCCAAAACACGAATCTCGATGATGACATGATCAATCTAGCAAATGGTTTTGAGGGTGAAAATAACAATAGGAGATCAGTAGTAGCGCAAGTACAACAAGAACATCTTGAAATCGAACAAGGCACTGATGTCAACTTGTTACAATGGAATCAGTTGTATCCTACAGGAAATAACGCACCCATTCCTCCTTCACAGCAAAGACGACAACAAGTACTTCATATGTCTCAGCTGTTCACACATCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

254

Amino Acids

28.48

Weight (kDa)

4.68

Isoelectric Point (pI)

60.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016418)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G427500_v2.0.a1 Prupe.1G427600_v2.0.a1
pyrus_communis	pycom08g07350
rosa_chinensis	RchiOBHm_Chr6g0295371 RchiOBHm_Chr6g0295381
rosa_laevigata	RLG00000011811
rosa_multiflora	Rmu_sc0003058.1_g000013 Rmu_sc0031171.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172550
rosa_rugosa	Rorug06G0250300
rosa_samantha	Rh6AG363500 Rh6BG371700 Rh6CG378100 Rh6DG364300
rosa_wichuraiana	Rw6G031730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	278
AclWI	GGATC	2 cut(s)	238, 415
AcsI	RAATTY	1 cut(s)	427
AfaI	GTAC	5 cut(s)	40, 324, 385, 609, 729
AgsI	TTSAA	4 cut(s)	13, 128, 191, 626
AhdI	GACNNNNNGTC	1 cut(s)	78
AluBI	AGCT	1 cut(s)	745
AluI	AGCT	1 cut(s)	745
Alw26I	GTCTC	2 cut(s)	86, 744
AlwI	GGATC	2 cut(s)	238, 415
Ama87I	CYCGRG	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	87, 371
ApoI	RAATTY	1 cut(s)	427
AspLEI	GCGC	3 cut(s)	279, 475, 604
AspS9I	GGNCC	1 cut(s)	406
AsuHPI	GGTGA	2 cut(s)	206, 584
AvaI	CYCGRG	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	406
BarI	GAAGNNNNNNTAC	2 cut(s)	370, 402
BbvI	GCAGC	2 cut(s)	99, 383
BciVI	GTATCC	1 cut(s)	684
BclI	TGATCA	2 cut(s)	109, 546
BcoDI	GTCTC	2 cut(s)	86, 744
BfaI	CTAG	2 cut(s)	290, 554
BfmI	CTRYAG	4 cut(s)	85, 315, 489, 678
BfoI	RGCGCY	1 cut(s)	476
BfuI	GTATCC	1 cut(s)	684
BisI	GCNGC	2 cut(s)	88, 372
BlsI	GCNGC	2 cut(s)	89, 373
BmcAI	AGTACT	3 cut(s)	40, 385, 729
Bme18I	GGWCC	1 cut(s)	406
BmeRI	GACNNNNNGTC	1 cut(s)	78
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	1 cut(s)	408
BmrI	ACTGGG	1 cut(s)	86
BmuI	ACTGGG	1 cut(s)	86
BpuEI	CTTGAG	2 cut(s)	396, 454
BsaBI	GATNNNNATC	1 cut(s)	108
Bse118I	RCCGGY	1 cut(s)	18
Bse1I	ACTGG	1 cut(s)	92
Bse8I	GATNNNNATC	1 cut(s)	108
BseJI	GATNNNNATC	1 cut(s)	108
BseMII	CTCAG	3 cut(s)	193, 472, 755
BseNI	ACTGG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	99, 383
BsgI	GTGCAG	2 cut(s)	120, 137
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	19
BsmAI	GTCTC	2 cut(s)	86, 744
BsoBI	CYCGRG	1 cut(s)	248
Bsp143I	GATC	7 cut(s)	109, 196, 207, 243, 420, 546, 590
BspCNI	CTCAG	3 cut(s)	192, 471, 754
BspLI	GGNNCC	1 cut(s)	408
BspMAI	CTGCAG	1 cut(s)	89
BspPI	GGATC	2 cut(s)	238, 415
BsrFI	RCCGGY	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	18
BssMI	GATC	7 cut(s)	109, 196, 207, 243, 420, 546, 590
Bst4CI	ACNGT	2 cut(s)	64, 146
BstC8I	GCNNGC	2 cut(s)	20, 281
BstDEI	CTNAG	4 cut(s)	179, 204, 458, 741
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	3 cut(s)	279, 475, 604
BstKTI	GATC	7 cut(s)	112, 199, 210, 246, 423, 549, 593
BstMAI	GTCTC	2 cut(s)	86, 744
BstMBI	GATC	7 cut(s)	109, 196, 207, 243, 420, 546, 590
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 494
BstNSI	RCATGY	2 cut(s)	78, 277
BstSFI	CTRYAG	4 cut(s)	85, 315, 489, 678
BstV1I	GCAGC	2 cut(s)	99, 383
BstX2I	RGATCY	2 cut(s)	243, 420
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstYI	RGATCY	2 cut(s)	243, 420
BsuI	GTATCC	1 cut(s)	684
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	3 cut(s)	60, 215, 639
Cac8I	GCNNGC	2 cut(s)	20, 281
CfoI	GCGC	3 cut(s)	279, 475, 604
Cfr10I	RCCGGY	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	406
Csp6I	GTAC	5 cut(s)	39, 323, 384, 608, 728
CviAII	CATG	4 cut(s)	75, 113, 274, 544
CviJI	RGCY	4 cut(s)	90, 447, 519, 745
CviKI_1	RGCY	4 cut(s)	90, 447, 519, 745
CviQI	GTAC	5 cut(s)	39, 323, 384, 608, 728
DdeI	CTNAG	4 cut(s)	179, 204, 458, 741
DpnI	GATC	7 cut(s)	111, 198, 209, 245, 422, 548, 592
DpnII	GATC	7 cut(s)	109, 196, 207, 243, 420, 546, 590
DriI	GACNNNNNGTC	1 cut(s)	78
Eam1105I	GACNNNNNGTC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	406
Eco88I	CYCGRG	1 cut(s)	248
FaeI	CATG	4 cut(s)	78, 116, 277, 547
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FatI	CATG	4 cut(s)	74, 112, 273, 543
FauNDI	CATATG	1 cut(s)	735
FbaI	TGATCA	2 cut(s)	109, 546
Fnu4HI	GCNGC	2 cut(s)	88, 372
Fsp4HI	GCNGC	2 cut(s)	88, 372
FspBI	CTAG	2 cut(s)	290, 554
FspI	TGCGCA	1 cut(s)	278
GlaI	GCGC	3 cut(s)	278, 474, 603
GluI	GCNGC	2 cut(s)	88, 372
HaeII	RGCGCY	1 cut(s)	476
HapII	CCGG	1 cut(s)	19
HhaI	GCGC	3 cut(s)	279, 475, 604
Hin1II	CATG	4 cut(s)	78, 116, 277, 547
Hin6I	GCGC	3 cut(s)	277, 473, 602
HinP1I	GCGC	3 cut(s)	277, 473, 602
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HinfI	GANTC	6 cut(s)	13, 124, 334, 467, 529, 664
HpaII	CCGG	1 cut(s)	19
HphI	GGTGA	2 cut(s)	206, 584
Hpy166II	GTNNAC	2 cut(s)	649, 750
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	5 cut(s)	250, 404, 433, 533, 623
Hpy8I	GTNNAC	2 cut(s)	649, 750
HpyAV	CCTTC	2 cut(s)	185, 714
HpyCH4III	ACNGT	2 cut(s)	64, 146
HpyCH4V	TGCA	6 cut(s)	87, 101, 118, 353, 371, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 494
HpyF3I	CTNAG	4 cut(s)	179, 204, 458, 741
Hsp92II	CATG	4 cut(s)	78, 116, 277, 547
HspAI	GCGC	3 cut(s)	277, 473, 602
KroI	GCCGGC	1 cut(s)	18
KroNI	GCCGGC	1 cut(s)	20
Ksp22I	TGATCA	2 cut(s)	109, 546
Kzo9I	GATC	7 cut(s)	109, 196, 207, 243, 420, 546, 590
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	6 cut(s)	32, 104, 105, 360, 389, 666
Lsp1109I	GCAGC	2 cut(s)	99, 383
MaeI	CTAG	2 cut(s)	290, 554
MaeIII	GTNAC	5 cut(s)	58, 150, 231, 504, 654
MalI	GATC	7 cut(s)	111, 198, 209, 245, 422, 548, 592
MboI	GATC	7 cut(s)	109, 196, 207, 243, 420, 546, 590
MboII	GAAGA	4 cut(s)	173, 297, 332, 443
MfeI	CAATTG	1 cut(s)	483
MflI	RGATCY	2 cut(s)	243, 420
MluCI	AATT	3 cut(s)	301, 427, 483
MnlI	CCTC	7 cut(s)	257, 319, 354, 420, 467, 562, 711
MroNI	GCCGGC	1 cut(s)	18
MseI	TTAA	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	745
MspI	CCGG	1 cut(s)	19
MunI	CAATTG	1 cut(s)	483
MwoI	GCNNNNNNNGC	2 cut(s)	84, 494
NaeI	GCCGGC	1 cut(s)	20
NdeI	CATATG	1 cut(s)	735
NdeII	GATC	7 cut(s)	109, 196, 207, 243, 420, 546, 590
NgoMIV	GCCGGC	1 cut(s)	18
NlaIII	CATG	4 cut(s)	78, 116, 277, 547
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	2 cut(s)	58, 150
NsbI	TGCGCA	1 cut(s)	278
NspI	RCATGY	2 cut(s)	78, 277
PaeR7I	CTCGAG	1 cut(s)	248
PdiI	GCCGGC	1 cut(s)	20
PfeI	GAWTC	6 cut(s)	13, 124, 334, 467, 529, 664
PkrI	GCNGC	2 cut(s)	89, 373
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	89
PsuI	RGATCY	2 cut(s)	243, 420
PvuII	CAGCTG	1 cut(s)	745
RsaI	GTAC	5 cut(s)	40, 324, 385, 609, 729
RsaNI	GTAC	5 cut(s)	39, 323, 384, 608, 728
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	2 cut(s)	88, 372
Sau3AI	GATC	7 cut(s)	109, 196, 207, 243, 420, 546, 590
Sau96I	GGNCC	1 cut(s)	406
ScaI	AGTACT	3 cut(s)	40, 385, 729
SetI	ASST	2 cut(s)	196, 747
SfcI	CTRYAG	4 cut(s)	85, 315, 489, 678
Sfr274I	CTCGAG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	406
SlaI	CTCGAG	1 cut(s)	248
SmlI	CTYRAG	3 cut(s)	248, 411, 433
SmoI	CTYRAG	3 cut(s)	248, 411, 433
Sse9I	AATT	3 cut(s)	301, 427, 483
SspI	AATATT	1 cut(s)	186
SspMI	CTAG	2 cut(s)	290, 554
TaaI	ACNGT	2 cut(s)	64, 146
TaqI	TCGA	3 cut(s)	249, 534, 630
TasI	AATT	3 cut(s)	301, 427, 483
TatI	WGTACW	5 cut(s)	38, 322, 383, 607, 727
TfiI	GAWTC	6 cut(s)	13, 124, 334, 467, 529, 664
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	3 cut(s)	67, 222, 646
TseFI	GTSAC	2 cut(s)	58, 150
TseI	GCWGC	2 cut(s)	87, 371
Tsp45I	GTSAC	2 cut(s)	58, 150
TspDTI	ATGAA	3 cut(s)	326, 372, 722
TspRI	CASTG	3 cut(s)	67, 222, 646
VpaK11BI	GGWCC	1 cut(s)	406
XapI	RAATTY	1 cut(s)	427
XceI	RCATGY	2 cut(s)	78, 277
XhoI	CTCGAG	1 cut(s)	248
XspI	CTAG	2 cut(s)	290, 554
ZrmI	AGTACT	3 cut(s)	40, 385, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.