Rh6BG371700

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016418
Physical Location & Seq
Forward (+)
60088850 .. 60091068
2219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG371700.1

Sequence Viewer

Length: 993 bp
ATGGGGAGAGTAAAACTTCAGATGAAGAGAATTGAGAATACCTCTAACAGACAGATCACTTTCTCAAAGAGAAAAAACGGACTTATTAAAAAAGCTTATGAACTGTCTGTTCTCTGTGATGTTGATGTAGCTCTCATCATGTTTTCTCCGTCTGGGAGACTTAGTCTATTCTCTGGCAATAAAAGTATTGAAGACATTTTAGCACGATATATCAATTATTCAAGACATGAACGAGGACGTCTTCATAATGAAGAGATTCTTCGCAGCATTCTTAATAAGCTGAAGAGTGAAGTTAATCAAACGTTTCAAACAATTAGCCCAGTTAGTGCAGATTTTGATCATGTGCAGGAGATTCAACAAGAAATCCTATACTGTAAGTCACAAATGGAAGAAGTGGAAAATCAACTCAGAATATTTGAAGGTGATCTCTCTAAGATCACAACACTGCCCGATATTGAGTTACGGGAGCAGATCCTCGAGAAAACTCTTAATCGTCTATACATGCGCAAGCAAGTTCTAGGAGTGTGTAATTCTTCCTCTACTATAGCAGTACAACCACAGATTCATCTTCCTCCAAATGCAGATGAACTTGTGATTGCAGCAGGAAGTAGTACTACTCAACCCACTTATCTGGACCCTCAAGTTGAGATCCTAAATTTCTTGAGTGCAAATGGCTTTCTTCCCCTCAGTAGTGATTCAGCGCCCCAACCAATTGTTGTAGTAGCACCAATGTTACCCCTTGATAGCCAAAACACGAATCTTGATGATGACATGATCAATCTAGCAAATGGTTTTGAGGGTGAAAATAACAATAGGAGATCAGTAGTAGCGCAAGTACAACAAGAACATCTTGAAATCGAACAAGGCACTGATGTCAACTTGATTCCATGGAATCAGTTGTATCCTACAGGAAATAACGCACCCATTCCTCCTTCACAGCAAAGACGACAACAAGTACTTCACATGTCTCAGCTGTTCACACATCAAATATGA

Protein Analysis

330

Amino Acids

37.4

Weight (kDa)

5.58

Isoelectric Point (pI)

60.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 55 1.4e-25 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 241
Acc16I TGCGCA 1 cut(s) 506
AclI AACGTT 1 cut(s) 302
AclWI GGATC 2 cut(s) 466, 643
AcsI RAATTY 1 cut(s) 655
AcuI CTGAAG 1 cut(s) 302
AcyI GRCGYC 1 cut(s) 238
AfaI GTAC 4 cut(s) 552, 613, 837, 957
AflIII ACRYGT 1 cut(s) 963
AgsI TTSAA 6 cut(s) 191, 222, 308, 356, 419, 854
AluBI AGCT 4 cut(s) 95, 131, 280, 973
AluI AGCT 4 cut(s) 95, 131, 280, 973
Alw26I GTCTC 2 cut(s) 151, 972
AlwI GGATC 2 cut(s) 466, 643
Ama87I CYCGRG 1 cut(s) 476
ApeKI GCWGC 2 cut(s) 264, 599
ApoI RAATTY 1 cut(s) 655
Asp700I GAANNNNTTC 1 cut(s) 255
AspLEI GCGC 3 cut(s) 507, 703, 832
AspS9I GGNCC 1 cut(s) 634
AsuHPI GGTGA 2 cut(s) 434, 812
AvaI CYCGRG 1 cut(s) 476
AvaII GGWCC 1 cut(s) 634
BarI GAAGNNNNNNTAC 2 cut(s) 598, 630
BbsI GAAGAC 2 cut(s) 198, 233
BbvI GCAGC 2 cut(s) 276, 611
BciVI GTATCC 1 cut(s) 912
BclI TGATCA 2 cut(s) 337, 774
BcoDI GTCTC 2 cut(s) 151, 972
BfaI CTAG 2 cut(s) 518, 782
BfmI CTRYAG 2 cut(s) 543, 906
BfoI RGCGCY 1 cut(s) 704
BfuI GTATCC 1 cut(s) 912
BisI GCNGC 2 cut(s) 265, 600
BlsI GCNGC 2 cut(s) 266, 601
BmcAI AGTACT 2 cut(s) 613, 957
Bme18I GGWCC 1 cut(s) 634
BmeT110I CYCGRG 1 cut(s) 476
BmgT120I GGNCC 1 cut(s) 634
BmiI GGNNCC 1 cut(s) 636
BmrI ACTGGG 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 314
BpiI GAAGAC 2 cut(s) 198, 233
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpuEI CTTGAG 2 cut(s) 624, 682
BsaBI GATNNNNATC 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 238
BsaJI CCNNGG 1 cut(s) 887
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bse1I ACTGG 1 cut(s) 320
Bse8I GATNNNNATC 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 887
BseJI GATNNNNATC 1 cut(s) 336
BseMII CTCAG 3 cut(s) 421, 700, 983
BseNI ACTGG 1 cut(s) 320
BseXI GCAGC 2 cut(s) 276, 611
BsgI GTGCAG 2 cut(s) 348, 365
BsiHKCI CYCGRG 1 cut(s) 476
BsmAI GTCTC 2 cut(s) 151, 972
BsmI GAATGC 1 cut(s) 267
BsoBI CYCGRG 1 cut(s) 476
Bsp143I GATC 8 cut(s) 54, 337, 424, 435, 471, 648, 774, 818
Bsp19I CCATGG 1 cut(s) 887
BspCNI CTCAG 3 cut(s) 420, 699, 982
BspLI GGNNCC 1 cut(s) 636
BspPI GGATC 2 cut(s) 466, 643
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 887
BssMI GATC 8 cut(s) 54, 337, 424, 435, 471, 648, 774, 818
BssNI GRCGYC 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 887
Bst4CI ACNGT 2 cut(s) 105, 374
Bst6I CTCTTC 3 cut(s) 20, 246, 278
BstACI GRCGYC 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 509
BstDEI CTNAG 5 cut(s) 161, 407, 432, 686, 969
BstDSI CCRYGG 1 cut(s) 887
BstH2I RGCGCY 1 cut(s) 704
BstHHI GCGC 3 cut(s) 507, 703, 832
BstKTI GATC 8 cut(s) 57, 340, 427, 438, 474, 651, 777, 821
BstMAI GTCTC 2 cut(s) 151, 972
BstMBI GATC 8 cut(s) 54, 337, 424, 435, 471, 648, 774, 818
BstNSI RCATGY 2 cut(s) 505, 967
BstSFI CTRYAG 2 cut(s) 543, 906
BstV1I GCAGC 2 cut(s) 276, 611
BstV2I GAAGAC 2 cut(s) 198, 233
BstX2I RGATCY 2 cut(s) 471, 648
BstXI CCANNNNNNTGG 1 cut(s) 631
BstYI RGATCY 2 cut(s) 471, 648
BsuI GTATCC 1 cut(s) 912
BtgI CCRYGG 1 cut(s) 887
BtsI GCAGTG 1 cut(s) 443
BtsIMutI CAGTG 2 cut(s) 443, 867
Cac8I GCNNGC 1 cut(s) 509
CfoI GCGC 3 cut(s) 507, 703, 832
Cfr13I GGNCC 1 cut(s) 634
Csp6I GTAC 4 cut(s) 551, 612, 836, 956
CviAII CATG 7 cut(s) 139, 227, 341, 502, 772, 888, 964
CviJI RGCY 7 cut(s) 95, 131, 280, 318, 675, 747, 973
CviKI_1 RGCY 7 cut(s) 95, 131, 280, 318, 675, 747, 973
CviQI GTAC 4 cut(s) 551, 612, 836, 956
DdeI CTNAG 5 cut(s) 161, 407, 432, 686, 969
DpnI GATC 8 cut(s) 56, 339, 426, 437, 473, 650, 776, 820
DpnII GATC 8 cut(s) 54, 337, 424, 435, 471, 648, 774, 818
Eam1104I CTCTTC 3 cut(s) 20, 246, 278
EarI CTCTTC 3 cut(s) 20, 246, 278
Eco130I CCWWGG 1 cut(s) 887
Eco47I GGWCC 1 cut(s) 634
Eco57I CTGAAG 1 cut(s) 302
Eco88I CYCGRG 1 cut(s) 476
EcoT14I CCWWGG 1 cut(s) 887
ErhI CCWWGG 1 cut(s) 887
FaeI CATG 7 cut(s) 142, 230, 344, 505, 775, 891, 967
FalI AAGNNNNNCTT 4 cut(s) 243, 275, 834, 866
FatI CATG 7 cut(s) 138, 226, 340, 501, 771, 887, 963
FbaI TGATCA 2 cut(s) 337, 774
Fnu4HI GCNGC 2 cut(s) 265, 600
Fsp4HI GCNGC 2 cut(s) 265, 600
FspBI CTAG 2 cut(s) 518, 782
FspI TGCGCA 1 cut(s) 506
GlaI GCGC 3 cut(s) 506, 702, 831
GluI GCNGC 2 cut(s) 265, 600
HaeII RGCGCY 1 cut(s) 704
HhaI GCGC 3 cut(s) 507, 703, 832
Hin1I GRCGYC 1 cut(s) 238
Hin1II CATG 7 cut(s) 142, 230, 344, 505, 775, 891, 967
Hin6I GCGC 3 cut(s) 505, 701, 830
HinP1I GCGC 3 cut(s) 505, 701, 830
HincII GTYRAC 1 cut(s) 877
HindII GTYRAC 1 cut(s) 877
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 7 cut(s) 256, 352, 562, 695, 757, 883, 892
HphI GGTGA 2 cut(s) 434, 812
Hpy166II GTNNAC 2 cut(s) 877, 978
Hpy188I TCNGA 2 cut(s) 21, 410
Hpy188III TCNNGA 6 cut(s) 222, 478, 632, 661, 761, 851
Hpy8I GTNNAC 2 cut(s) 877, 978
HpyAV CCTTC 2 cut(s) 413, 942
HpyCH4III ACNGT 2 cut(s) 105, 374
HpyCH4IV ACGT 2 cut(s) 238, 302
HpyCH4V TGCA 5 cut(s) 329, 346, 581, 599, 668
HpyF3I CTNAG 5 cut(s) 161, 407, 432, 686, 969
HpySE526I ACGT 2 cut(s) 238, 302
Hsp92I GRCGYC 1 cut(s) 238
Hsp92II CATG 7 cut(s) 142, 230, 344, 505, 775, 891, 967
HspAI GCGC 3 cut(s) 505, 701, 830
Ksp22I TGATCA 2 cut(s) 337, 774
Kzo9I GATC 8 cut(s) 54, 337, 424, 435, 471, 648, 774, 818
LmnI GCTCC 1 cut(s) 466
LpnPI CCDG 7 cut(s) 138, 159, 332, 333, 588, 617, 894
Lsp1109I GCAGC 2 cut(s) 276, 611
MaeI CTAG 2 cut(s) 518, 782
MaeII ACGT 2 cut(s) 238, 302
MaeIII GTNAC 3 cut(s) 378, 459, 732
MalI GATC 8 cut(s) 56, 339, 426, 437, 473, 650, 776, 820
MboI GATC 8 cut(s) 54, 337, 424, 435, 471, 648, 774, 818
MfeI CAATTG 1 cut(s) 711
MflI RGATCY 2 cut(s) 471, 648
MluCI AATT 6 cut(s) 30, 214, 312, 529, 655, 711
MnlI CCTC 9 cut(s) 52, 227, 485, 547, 582, 648, 695, 790, 939
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 4 cut(s) 87, 273, 294, 489
MspA1I CMGCKG 1 cut(s) 973
MunI CAATTG 1 cut(s) 711
Mva1269I GAATGC 1 cut(s) 267
NcoI CCATGG 1 cut(s) 887
NdeII GATC 8 cut(s) 54, 337, 424, 435, 471, 648, 774, 818
NlaIII CATG 7 cut(s) 142, 230, 344, 505, 775, 891, 967
NlaIV GGNNCC 1 cut(s) 636
NmuCI GTSAC 1 cut(s) 378
NsbI TGCGCA 1 cut(s) 506
NspI RCATGY 2 cut(s) 505, 967
PaeR7I CTCGAG 1 cut(s) 476
PciI ACATGT 1 cut(s) 963
PctI GAATGC 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 7 cut(s) 256, 352, 562, 695, 757, 883, 892
PflFI GACNNNGTC 1 cut(s) 162
PkrI GCNGC 2 cut(s) 266, 601
PscI ACATGT 1 cut(s) 963
Psp1406I AACGTT 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 636
PspPI GGNCC 1 cut(s) 634
PsuI RGATCY 2 cut(s) 471, 648
PsyI GACNNNGTC 1 cut(s) 162
PvuII CAGCTG 1 cut(s) 973
RsaI GTAC 4 cut(s) 552, 613, 837, 957
RsaNI GTAC 4 cut(s) 551, 612, 836, 956
SaqAI TTAA 4 cut(s) 87, 273, 294, 489
SatI GCNGC 2 cut(s) 265, 600
Sau3AI GATC 8 cut(s) 54, 337, 424, 435, 471, 648, 774, 818
Sau96I GGNCC 1 cut(s) 634
ScaI AGTACT 2 cut(s) 613, 957
SetI ASST 8 cut(s) 44, 97, 133, 241, 282, 305, 424, 975
SfcI CTRYAG 2 cut(s) 543, 906
Sfr274I CTCGAG 1 cut(s) 476
SinI GGWCC 1 cut(s) 634
SlaI CTCGAG 1 cut(s) 476
SmlI CTYRAG 3 cut(s) 476, 639, 661
SmoI CTYRAG 3 cut(s) 476, 639, 661
Sse9I AATT 6 cut(s) 30, 214, 312, 529, 655, 711
SspI AATATT 1 cut(s) 414
SspMI CTAG 2 cut(s) 518, 782
StyI CCWWGG 1 cut(s) 887
TaaI ACNGT 2 cut(s) 105, 374
TaiI ACGT 2 cut(s) 241, 305
TaqI TCGA 2 cut(s) 477, 858
TasI AATT 6 cut(s) 30, 214, 312, 529, 655, 711
TatI WGTACW 4 cut(s) 550, 611, 835, 955
TfiI GAWTC 7 cut(s) 256, 352, 562, 695, 757, 883, 892
Tru1I TTAA 4 cut(s) 87, 273, 294, 489
Tru9I TTAA 4 cut(s) 87, 273, 294, 489
TscAI CASTG 2 cut(s) 450, 874
TseFI GTSAC 1 cut(s) 378
TseI GCWGC 2 cut(s) 264, 599
Tsp45I GTSAC 1 cut(s) 378
TspDTI ATGAA 7 cut(s) 38, 114, 233, 243, 264, 554, 600
TspGWI ACGGA 2 cut(s) 93, 138
TspRI CASTG 2 cut(s) 450, 874
Tth111I GACNNNGTC 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 634
XapI RAATTY 1 cut(s) 655
XceI RCATGY 2 cut(s) 505, 967
XhoI CTCGAG 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 2 cut(s) 518, 782
ZraI GACGTC 1 cut(s) 239
ZrmI AGTACT 2 cut(s) 613, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.