Prupe.1G443200_v2.0.a1

RNA polymerase sigma factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
37585636 .. 37589232
3597 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G443200.3

Sequence Viewer

Length: 1662 bp
ATGGGTTTGGGTTTTAGGCTGAACCTCAAGTGTGGCTTTCCTGTTCATTCTTCTCACTGGCAAACCACTTCCCCTTCCAAGATTTCTTCAACTTCTGTTAGAGGCAGGGAGGGCTCTTTCAACTCAGCAAGGTTGTCCTTTCTGTCTGTTATTTCTGAGGAAGGTGAGGCTTCTAGTAAAGATCCTCTGAAAGTTTACACTTTTCCATCTGCTTCCCCACAAATCTTAGAGGATGGTGTCTCAGAACTGGAAGAGACAGCCTTTAGGAGGGTGCCAAAGAGTTTTAGTGACAACCAGATGCCTGTTGCAGAAGGCAAGTTTATATCCAGTAAAGGCTTAGAAGCATGCACGGCATCTCATTTTAGTTTGTTACTGCAAAATCTTAATGTTTTGGAGGAGACTTTTGCCACTTCAGATGTGTTAAAGTTGGAGAAAGAGATTCTTTTGCAACTAGCAAGGCTTGGAGCTCTAAAGTTATTTGATATCTGTCTATCGAGAACTCTTAAAACCTCGAGCTTTTTGGATTTGTCTGACATACCTACAGTACCGGTTGAAGAGGGTAAGATGGAGAGAAAAGAAGATAACAACGTAGGCGAGATTATTGTTCGTTCAGGGAAAAAGGAAGAAAGAAGATCAAGAAAAAGAACATCAGATAATGCCATAGTGTCTTCTAATTCATTGCCTCCAAAAACAATTTGGAAAGGTCTTAAAAAGCCTACTCTTTCATCAGGAAAAAGAGCATCAAATTATAGAAGTAGAAGACTGACCATTTCTAAAAATGAGGCAGAAATGTCAATCGGGGTTAAGGTGATCGCCGACTTGGAGAGAATTAAAGAAACTTTGGAAAAGGAAACTGGTAAAGTAGCGACCTTAAGGTGCTGGGCAGAAGCAGCGGGAGTTCATGAAAAGGTGCTGCTACAGCATTTGCGTTTTGGTTGGTATTGCCAGGATGAGCTTATAAGGAGCACTCGTTCCTTAGTTCTTTACCTTGCTAGAAACTATAGAGGGCTAGGGGTAGCCTTGGATGATTTAATGCAGGCTGGAAACTTGGGTCTCCTGCAAGGTGCAGAAAGGTTTGATCACTCAAGGGGTTATAGATTCTCAACCTATGTTCAGTACTGGATAAGGAAATCAATGTCAAGATTGGTGGCACAGCATGCTAGGGGGGTCCAAATTCCGTTCACACTAAGCAAGGCAATCAATCAGATACAGAAAGCTCGAAAAGCCAATTACAACAGCCACATGAAATACCCAGATGATGAGGAAATTGCAAAGATTACAGGTCTTTCTTTGGCGAGAATCAGATCAGCTAGTACATGTCTGAGAGTTGTGGGTTCGGTAGATCATAAAATGTGGGAAAGCTCTGATGGGACATATATGGAATTTACACCAGACACATCACTAAAGAGCCCTGAAGAAACTGTCATGAGGCAACACATGAAAAAGGACATTCATGATCTGCTGAAAGGGTTGAATTTGAGAGAGAGGCAAGTGTTGGTACTGCGATACGGGCTAAACAACTACGACCCCAAGTCACTTGAGGAGATTGGCAGACTTTTCCATGTGAGCAAGGAGTGGATAAGGAAGATAGAAAAGAAAGCTCTGATGAAGCTGAGGGTTGAAGAATCCCACAAATACTTAAGCCATTACTTGAATAACTAG

Protein Analysis

554

Amino Acids

62.74

Weight (kDa)

9.53

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 959
AccB1I GGYRCC 1 cut(s) 271
AciI CCGC 1 cut(s) 893
AclWI GGATC 1 cut(s) 176
AcsI RAATTY 3 cut(s) 1173, 1382, 1474
AcuI CTGAAG 2 cut(s) 396, 1434
AfaI GTAC 4 cut(s) 546, 1118, 1315, 1500
AfiI CCNNNNNNNGG 1 cut(s) 267
AflII CTTAAG 2 cut(s) 871, 1639
AflIII ACRYGT 1 cut(s) 1316
AgeI ACCGGT 1 cut(s) 547
AgsI TTSAA 6 cut(s) 90, 121, 554, 1474, 1622, 1654
AhdI GACNNNNNGTC 1 cut(s) 1531
AjnI CCWGG 1 cut(s) 945
AloI GAACNNNNNNTCC 2 cut(s) 955, 987
AluBI AGCT 8 cut(s) 467, 516, 955, 1217, 1310, 1362, 1601, 1612
AluI AGCT 8 cut(s) 467, 516, 955, 1217, 1310, 1362, 1601, 1612
Alw21I GWGCWC 2 cut(s) 469, 968
Alw26I GTCTC 4 cut(s) 244, 248, 392, 1058
AlwI GGATC 1 cut(s) 176
Ama87I CYCGRG 1 cut(s) 511
ApeKI GCWGC 2 cut(s) 890, 913
ApoI RAATTY 3 cut(s) 1173, 1382, 1474
AsiGI ACCGGT 1 cut(s) 547
AspS9I GGNCC 1 cut(s) 1168
AsuHPI GGTGA 2 cut(s) 176, 820
AvaI CYCGRG 1 cut(s) 511
AvaII GGWCC 1 cut(s) 1168
BanI GGYRCC 1 cut(s) 271
BanII GRGCYC 3 cut(s) 116, 469, 1412
BbsI GAAGAC 2 cut(s) 660, 766
Bbv12I GWGCWC 2 cut(s) 469, 968
BbvCI CCTCAGC 1 cut(s) 1613
BbvI GCAGC 2 cut(s) 900, 902
BccI CCATC 4 cut(s) 214, 227, 559, 1361
BceAI ACGGC 1 cut(s) 366
BciT130I CCWGG 1 cut(s) 947
BclI TGATCA 1 cut(s) 1078
BcoDI GTCTC 4 cut(s) 244, 248, 392, 1058
BfaI CTAG 7 cut(s) 174, 452, 993, 1010, 1161, 1311, 1660
BfmI CTRYAG 3 cut(s) 540, 917, 1000
BfrI CTTAAG 2 cut(s) 871, 1639
BisI GCNGC 2 cut(s) 891, 914
BlsI GCNGC 2 cut(s) 892, 915
BmcAI AGTACT 1 cut(s) 1118
Bme1390I CCNGG 1 cut(s) 947
Bme18I GGWCC 1 cut(s) 1168
BmeRI GACNNNNNGTC 1 cut(s) 1531
BmeT110I CYCGRG 1 cut(s) 511
BmgT120I GGNCC 1 cut(s) 1168
BmiI GGNNCC 2 cut(s) 273, 1169
BmrFI CCNGG 1 cut(s) 947
BmsI GCATC 3 cut(s) 288, 362, 749
BpiI GAAGAC 2 cut(s) 660, 766
Bpu10I CCTNAGC 1 cut(s) 1613
BpuEI CTTGAG 3 cut(s) 11, 1069, 1559
BsaI GGTCTC 1 cut(s) 1058
BsaJI CCNNGG 1 cut(s) 1020
BsaWI WCCGGW 1 cut(s) 547
BsaXI ACNNNNNCTCC 2 cut(s) 955, 985
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse118I RCCGGY 1 cut(s) 547
Bse1I ACTGG 5 cut(s) 62, 252, 327, 859, 1124
Bse3DI GCAATG 1 cut(s) 677
BseBI CCWGG 1 cut(s) 947
BseDI CCNNGG 1 cut(s) 1020
BseGI GGATG 3 cut(s) 238, 955, 1030
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMI GCAATG 1 cut(s) 677
BseMII CTCAG 5 cut(s) 138, 147, 255, 1313, 1604
BseNI ACTGG 5 cut(s) 62, 252, 327, 859, 1124
BseRI GAGGAG 2 cut(s) 410, 1556
BseXI GCAGC 2 cut(s) 900, 902
BseYI CCCAGC 1 cut(s) 879
BsgI GTGCAG 1 cut(s) 1086
BshNI GGYRCC 1 cut(s) 271
BshTI ACCGGT 1 cut(s) 547
BsiHKAI GWGCWC 2 cut(s) 469, 968
BsiHKCI CYCGRG 1 cut(s) 511
BsiSI CCGG 1 cut(s) 548
BslFI GGGAC 1 cut(s) 1384
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 4 cut(s) 244, 248, 392, 1058
BsmFI GGGAC 1 cut(s) 1384
Bso31I GGTCTC 1 cut(s) 1058
BsoBI CYCGRG 1 cut(s) 511
Bsp1286I GDGCHC 4 cut(s) 116, 469, 968, 1412
Bsp143I GATC 7 cut(s) 181, 632, 810, 1078, 1304, 1342, 1456
BspACI CCGC 1 cut(s) 893
BspCNI CTCAG 5 cut(s) 137, 148, 254, 1314, 1605
BspHI TCATGA 3 cut(s) 901, 1425, 1453
BspLI GGNNCC 2 cut(s) 273, 1169
BspPI GGATC 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 271
BspTI CTTAAG 2 cut(s) 871, 1639
BspTNI GGTCTC 1 cut(s) 1058
BsrDI GCAATG 1 cut(s) 677
BsrFI RCCGGY 1 cut(s) 547
BsrI ACTGG 5 cut(s) 62, 252, 327, 859, 1124
BssAI RCCGGY 1 cut(s) 547
BssECI CCNNGG 1 cut(s) 1020
BssMI GATC 7 cut(s) 181, 632, 810, 1078, 1304, 1342, 1456
BssT1I CCWWGG 1 cut(s) 1020
Bst2UI CCWGG 1 cut(s) 947
Bst4CI ACNGT 2 cut(s) 544, 1423
Bst6I CTCTTC 2 cut(s) 246, 549
BstAFI CTTAAG 2 cut(s) 871, 1639
BstAPI GCANNNNNTGC 1 cut(s) 1157
BstC8I GCNNGC 3 cut(s) 346, 1038, 1158
BstDEI CTNAG 9 cut(s) 124, 156, 226, 241, 337, 976, 1187, 1322, 1613
BstENI CCTNNNNNAGG 1 cut(s) 265
BstF5I GGATG 3 cut(s) 238, 955, 1030
BstKTI GATC 7 cut(s) 184, 635, 813, 1081, 1307, 1345, 1459
BstMAI GTCTC 4 cut(s) 244, 248, 392, 1058
BstMBI GATC 7 cut(s) 181, 632, 810, 1078, 1304, 1342, 1456
BstMWI GCNNNNNNNGC 7 cut(s) 111, 350, 890, 919, 1157, 1223, 1510
BstNI CCWGG 1 cut(s) 947
BstNSI RCATGY 3 cut(s) 348, 1160, 1320
BstSCI CCNGG 1 cut(s) 945
BstSFI CTRYAG 3 cut(s) 540, 917, 1000
BstV1I GCAGC 2 cut(s) 900, 902
BstV2I GAAGAC 2 cut(s) 660, 766
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BtsCI GGATG 3 cut(s) 238, 955, 1030
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 3 cut(s) 346, 1038, 1158
CciI TCATGA 3 cut(s) 901, 1425, 1453
Cfr10I RCCGGY 1 cut(s) 547
Cfr13I GGNCC 1 cut(s) 1168
Csp6I GTAC 4 cut(s) 545, 1117, 1314, 1499
CspAI ACCGGT 1 cut(s) 547
CspCI CAANNNNNGTGG 2 cut(s) 1128, 1163
CviAII CATG 9 cut(s) 345, 902, 1157, 1243, 1317, 1426, 1438, 1454, 1562
CviQI GTAC 4 cut(s) 545, 1117, 1314, 1499
DdeI CTNAG 9 cut(s) 124, 156, 226, 241, 337, 976, 1187, 1322, 1613
DpnI GATC 7 cut(s) 183, 634, 812, 1080, 1306, 1344, 1458
DpnII GATC 7 cut(s) 181, 632, 810, 1078, 1304, 1342, 1456
DriI GACNNNNNGTC 1 cut(s) 1531
Eam1104I CTCTTC 2 cut(s) 246, 549
Eam1105I GACNNNNNGTC 1 cut(s) 1531
EarI CTCTTC 2 cut(s) 246, 549
Ecl136II GAGCTC 1 cut(s) 467
Eco130I CCWWGG 1 cut(s) 1020
Eco24I GRGCYC 3 cut(s) 116, 469, 1412
Eco31I GGTCTC 1 cut(s) 1058
Eco32I GATATC 1 cut(s) 484
Eco47I GGWCC 1 cut(s) 1168
Eco53kI GAGCTC 1 cut(s) 467
Eco57I CTGAAG 2 cut(s) 396, 1434
Eco88I CYCGRG 1 cut(s) 511
EcoICRI GAGCTC 1 cut(s) 467
EcoNI CCTNNNNNAGG 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 945
EcoRV GATATC 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 1020
EcoT38I GRGCYC 3 cut(s) 116, 469, 1412
ErhI CCWWGG 1 cut(s) 1020
FaeI CATG 9 cut(s) 348, 905, 1160, 1246, 1320, 1429, 1441, 1457, 1565
FalI AAGNNNNNCTT 4 cut(s) 20, 52, 426, 458
FaqI GGGAC 1 cut(s) 1384
FatI CATG 9 cut(s) 344, 901, 1156, 1242, 1316, 1425, 1437, 1453, 1561
FauI CCCGC 1 cut(s) 886
FbaI TGATCA 1 cut(s) 1078
Fnu4HI GCNGC 2 cut(s) 891, 914
FokI GGATG 3 cut(s) 245, 962, 1037
FriOI GRGCYC 3 cut(s) 116, 469, 1412
Fsp4HI GCNGC 2 cut(s) 891, 914
FspBI CTAG 7 cut(s) 174, 452, 993, 1010, 1161, 1311, 1660
GluI GCNGC 2 cut(s) 891, 914
GsaI CCCAGC 1 cut(s) 883
HapII CCGG 1 cut(s) 548
Hin1II CATG 9 cut(s) 348, 905, 1160, 1246, 1320, 1429, 1441, 1457, 1565
HinfI GANTC 4 cut(s) 439, 1098, 1299, 1625
HpaII CCGG 1 cut(s) 548
HphI GGTGA 2 cut(s) 176, 820
Hpy166II GTNNAC 2 cut(s) 196, 1182
Hpy188III TCNNGA 7 cut(s) 495, 636, 729, 902, 1140, 1426, 1454
Hpy8I GTNNAC 2 cut(s) 196, 1182
HpyAV CCTTC 3 cut(s) 84, 155, 305
HpyCH4III ACNGT 2 cut(s) 544, 1423
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 8 cut(s) 308, 348, 376, 448, 1036, 1060, 1067, 1271
HpyF10VI GCNNNNNNNGC 7 cut(s) 111, 350, 890, 919, 1157, 1223, 1510
HpyF3I CTNAG 9 cut(s) 124, 156, 226, 241, 337, 976, 1187, 1322, 1613
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 9 cut(s) 348, 905, 1160, 1246, 1320, 1429, 1441, 1457, 1565
Ksp22I TGATCA 1 cut(s) 1078
Kzo9I GATC 7 cut(s) 181, 632, 810, 1078, 1304, 1342, 1456
LmnI GCTCC 2 cut(s) 464, 963
Lsp1109I GCAGC 2 cut(s) 900, 902
LweI GCATC 3 cut(s) 288, 362, 749
MaeI CTAG 7 cut(s) 174, 452, 993, 1010, 1161, 1311, 1660
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 3 cut(s) 287, 369, 1533
MalI GATC 7 cut(s) 183, 634, 812, 1080, 1306, 1344, 1458
MboI GATC 7 cut(s) 181, 632, 810, 1078, 1304, 1342, 1456
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 4 cut(s) 116, 469, 968, 1412
MluCI AATT 9 cut(s) 673, 693, 745, 828, 1173, 1228, 1266, 1382, 1474
MmeI TCCRAC 1 cut(s) 408
MseI TTAA 9 cut(s) 384, 422, 504, 708, 804, 831, 872, 1031, 1640
MspA1I CMGCKG 1 cut(s) 893
MspCI CTTAAG 2 cut(s) 871, 1639
MspI CCGG 1 cut(s) 548
MspR9I CCNGG 1 cut(s) 947
MvaI CCWGG 1 cut(s) 947
MwoI GCNNNNNNNGC 7 cut(s) 111, 350, 890, 919, 1157, 1223, 1510
NdeII GATC 7 cut(s) 181, 632, 810, 1078, 1304, 1342, 1456
NlaIII CATG 9 cut(s) 348, 905, 1160, 1246, 1320, 1429, 1441, 1457, 1565
NlaIV GGNNCC 2 cut(s) 273, 1169
NmuCI GTSAC 2 cut(s) 287, 1533
NspI RCATGY 3 cut(s) 348, 1160, 1320
PaeI GCATGC 2 cut(s) 348, 1160
PaeR7I CTCGAG 1 cut(s) 511
PagI TCATGA 3 cut(s) 901, 1425, 1453
PciI ACATGT 1 cut(s) 1316
PfeI GAWTC 4 cut(s) 439, 1098, 1299, 1625
PinAI ACCGGT 1 cut(s) 547
PkrI GCNGC 2 cut(s) 892, 915
PscI ACATGT 1 cut(s) 1316
PsiI TTATAA 1 cut(s) 959
Psp124BI GAGCTC 1 cut(s) 469
Psp6I CCWGG 1 cut(s) 945
PspFI CCCAGC 1 cut(s) 879
PspGI CCWGG 1 cut(s) 945
PspN4I GGNNCC 2 cut(s) 273, 1169
PspPI GGNCC 1 cut(s) 1168
PspXI VCTCGAGB 1 cut(s) 511
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 4 cut(s) 546, 1118, 1315, 1500
RsaNI GTAC 4 cut(s) 545, 1117, 1314, 1499
SacI GAGCTC 1 cut(s) 469
SaqAI TTAA 9 cut(s) 384, 422, 504, 708, 804, 831, 872, 1031, 1640
SatI GCNGC 2 cut(s) 891, 914
Sau3AI GATC 7 cut(s) 181, 632, 810, 1078, 1304, 1342, 1456
Sau96I GGNCC 1 cut(s) 1168
ScaI AGTACT 1 cut(s) 1118
ScrFI CCNGG 1 cut(s) 947
SduI GDGCHC 4 cut(s) 116, 469, 968, 1412
SfaNI GCATC 3 cut(s) 288, 362, 749
SfcI CTRYAG 3 cut(s) 540, 917, 1000
Sfr274I CTCGAG 1 cut(s) 511
SinI GGWCC 1 cut(s) 1168
SlaI CTCGAG 1 cut(s) 511
SmlI CTYRAG 6 cut(s) 26, 511, 871, 1084, 1538, 1639
SmoI CTYRAG 6 cut(s) 26, 511, 871, 1084, 1538, 1639
SphI GCATGC 2 cut(s) 348, 1160
Sse9I AATT 9 cut(s) 673, 693, 745, 828, 1173, 1228, 1266, 1382, 1474
SsiI CCGC 1 cut(s) 893
SspMI CTAG 7 cut(s) 174, 452, 993, 1010, 1161, 1311, 1660
SstI GAGCTC 1 cut(s) 469
StyD4I CCNGG 1 cut(s) 945
StyI CCWWGG 1 cut(s) 1020
TaaI ACNGT 2 cut(s) 544, 1423
TaiI ACGT 1 cut(s) 591
TaqI TCGA 3 cut(s) 494, 512, 1219
TasI AATT 9 cut(s) 673, 693, 745, 828, 1173, 1228, 1266, 1382, 1474
TatI WGTACW 2 cut(s) 1116, 1313
TfiI GAWTC 4 cut(s) 439, 1098, 1299, 1625
Tru1I TTAA 9 cut(s) 384, 422, 504, 708, 804, 831, 872, 1031, 1640
Tru9I TTAA 9 cut(s) 384, 422, 504, 708, 804, 831, 872, 1031, 1640
TscAI CASTG 1 cut(s) 62
TseFI GTSAC 2 cut(s) 287, 1533
TseI GCWGC 2 cut(s) 890, 913
Tsp45I GTSAC 2 cut(s) 287, 1533
TspDTI ATGAA 9 cut(s) 35, 666, 714, 890, 918, 1259, 1442, 1454, 1622
TspGWI ACGGA 1 cut(s) 1167
TspRI CASTG 1 cut(s) 62
Vha464I CTTAAG 2 cut(s) 871, 1639
VpaK11BI GGWCC 1 cut(s) 1168
XagI CCTNNNNNAGG 1 cut(s) 265
XapI RAATTY 3 cut(s) 1173, 1382, 1474
XceI RCATGY 3 cut(s) 348, 1160, 1320
XcmI CCANNNNNNNNNTGG 1 cut(s) 693
XhoI CTCGAG 1 cut(s) 511
XspI CTAG 7 cut(s) 174, 452, 993, 1010, 1161, 1311, 1660
ZrmI AGTACT 1 cut(s) 1118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.