RNA polymerase sigma factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G53920 AT3G53920 |
| fragaria_vesca | FvH4_2g35110 FvH4_2g35110 FvH4_2g35110 |
| malus_domestica | MD08G1108600.v1.1 MD15G1089100.v1.1 |
| prunus_persica | Prupe.1G443200_v2.0.a1 Prupe.1G443200_v2.0.a1 Prupe.1G443200_v2.0.a1 |
| pyrus_communis | pycom08g09050 pycom15g08350 |
| rosa_chinensis | RchiOBHm_Chr6g0306861 |
| rosa_laevigata | RLG00000010760 |
| rosa_multiflora | Rmu_sc0009381.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00161410 |
| rosa_rugosa | Rorug06G0353600 Rorug06G0353700 Rorug06G0353800 Rorug06G0353900 |
| rosa_samantha | Rh6AG465400 Rh6BG435400 Rh6CG479800 Rh6DG466800 |
| rosa_wichuraiana | Rw6G040560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 959 |
| AccB1I | GGYRCC | 1 cut(s) | 271 |
| AciI | CCGC | 1 cut(s) | 893 |
| AclWI | GGATC | 1 cut(s) | 176 |
| AcsI | RAATTY | 3 cut(s) | 1173, 1382, 1474 |
| AcuI | CTGAAG | 2 cut(s) | 396, 1434 |
| AfaI | GTAC | 4 cut(s) | 546, 1118, 1315, 1500 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 267 |
| AflII | CTTAAG | 2 cut(s) | 871, 1639 |
| AflIII | ACRYGT | 1 cut(s) | 1316 |
| AgeI | ACCGGT | 1 cut(s) | 547 |
| AgsI | TTSAA | 6 cut(s) | 90, 121, 554, 1474, 1622, 1654 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1531 |
| AjnI | CCWGG | 1 cut(s) | 945 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 955, 987 |
| AluBI | AGCT | 8 cut(s) | 467, 516, 955, 1217, 1310, 1362, 1601, 1612 |
| AluI | AGCT | 8 cut(s) | 467, 516, 955, 1217, 1310, 1362, 1601, 1612 |
| Alw21I | GWGCWC | 2 cut(s) | 469, 968 |
| Alw26I | GTCTC | 4 cut(s) | 244, 248, 392, 1058 |
| AlwI | GGATC | 1 cut(s) | 176 |
| Ama87I | CYCGRG | 1 cut(s) | 511 |
| ApeKI | GCWGC | 2 cut(s) | 890, 913 |
| ApoI | RAATTY | 3 cut(s) | 1173, 1382, 1474 |
| AsiGI | ACCGGT | 1 cut(s) | 547 |
| AspS9I | GGNCC | 1 cut(s) | 1168 |
| AsuHPI | GGTGA | 2 cut(s) | 176, 820 |
| AvaI | CYCGRG | 1 cut(s) | 511 |
| AvaII | GGWCC | 1 cut(s) | 1168 |
| BanI | GGYRCC | 1 cut(s) | 271 |
| BanII | GRGCYC | 3 cut(s) | 116, 469, 1412 |
| BbsI | GAAGAC | 2 cut(s) | 660, 766 |
| Bbv12I | GWGCWC | 2 cut(s) | 469, 968 |
| BbvCI | CCTCAGC | 1 cut(s) | 1613 |
| BbvI | GCAGC | 2 cut(s) | 900, 902 |
| BccI | CCATC | 4 cut(s) | 214, 227, 559, 1361 |
| BceAI | ACGGC | 1 cut(s) | 366 |
| BciT130I | CCWGG | 1 cut(s) | 947 |
| BclI | TGATCA | 1 cut(s) | 1078 |
| BcoDI | GTCTC | 4 cut(s) | 244, 248, 392, 1058 |
| BfaI | CTAG | 7 cut(s) | 174, 452, 993, 1010, 1161, 1311, 1660 |
| BfmI | CTRYAG | 3 cut(s) | 540, 917, 1000 |
| BfrI | CTTAAG | 2 cut(s) | 871, 1639 |
| BisI | GCNGC | 2 cut(s) | 891, 914 |
| BlsI | GCNGC | 2 cut(s) | 892, 915 |
| BmcAI | AGTACT | 1 cut(s) | 1118 |
| Bme1390I | CCNGG | 1 cut(s) | 947 |
| Bme18I | GGWCC | 1 cut(s) | 1168 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1531 |
| BmeT110I | CYCGRG | 1 cut(s) | 511 |
| BmgT120I | GGNCC | 1 cut(s) | 1168 |
| BmiI | GGNNCC | 2 cut(s) | 273, 1169 |
| BmrFI | CCNGG | 1 cut(s) | 947 |
| BmsI | GCATC | 3 cut(s) | 288, 362, 749 |
| BpiI | GAAGAC | 2 cut(s) | 660, 766 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1613 |
| BpuEI | CTTGAG | 3 cut(s) | 11, 1069, 1559 |
| BsaI | GGTCTC | 1 cut(s) | 1058 |
| BsaJI | CCNNGG | 1 cut(s) | 1020 |
| BsaWI | WCCGGW | 1 cut(s) | 547 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 955, 985 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 267 |
| Bse118I | RCCGGY | 1 cut(s) | 547 |
| Bse1I | ACTGG | 5 cut(s) | 62, 252, 327, 859, 1124 |
| Bse3DI | GCAATG | 1 cut(s) | 677 |
| BseBI | CCWGG | 1 cut(s) | 947 |
| BseDI | CCNNGG | 1 cut(s) | 1020 |
| BseGI | GGATG | 3 cut(s) | 238, 955, 1030 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 267 |
| BseMI | GCAATG | 1 cut(s) | 677 |
| BseMII | CTCAG | 5 cut(s) | 138, 147, 255, 1313, 1604 |
| BseNI | ACTGG | 5 cut(s) | 62, 252, 327, 859, 1124 |
| BseRI | GAGGAG | 2 cut(s) | 410, 1556 |
| BseXI | GCAGC | 2 cut(s) | 900, 902 |
| BseYI | CCCAGC | 1 cut(s) | 879 |
| BsgI | GTGCAG | 1 cut(s) | 1086 |
| BshNI | GGYRCC | 1 cut(s) | 271 |
| BshTI | ACCGGT | 1 cut(s) | 547 |
| BsiHKAI | GWGCWC | 2 cut(s) | 469, 968 |
| BsiHKCI | CYCGRG | 1 cut(s) | 511 |
| BsiSI | CCGG | 1 cut(s) | 548 |
| BslFI | GGGAC | 1 cut(s) | 1384 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 267 |
| BsmAI | GTCTC | 4 cut(s) | 244, 248, 392, 1058 |
| BsmFI | GGGAC | 1 cut(s) | 1384 |
| Bso31I | GGTCTC | 1 cut(s) | 1058 |
| BsoBI | CYCGRG | 1 cut(s) | 511 |
| Bsp1286I | GDGCHC | 4 cut(s) | 116, 469, 968, 1412 |
| Bsp143I | GATC | 7 cut(s) | 181, 632, 810, 1078, 1304, 1342, 1456 |
| BspACI | CCGC | 1 cut(s) | 893 |
| BspCNI | CTCAG | 5 cut(s) | 137, 148, 254, 1314, 1605 |
| BspHI | TCATGA | 3 cut(s) | 901, 1425, 1453 |
| BspLI | GGNNCC | 2 cut(s) | 273, 1169 |
| BspPI | GGATC | 1 cut(s) | 176 |
| BspT107I | GGYRCC | 1 cut(s) | 271 |
| BspTI | CTTAAG | 2 cut(s) | 871, 1639 |
| BspTNI | GGTCTC | 1 cut(s) | 1058 |
| BsrDI | GCAATG | 1 cut(s) | 677 |
| BsrFI | RCCGGY | 1 cut(s) | 547 |
| BsrI | ACTGG | 5 cut(s) | 62, 252, 327, 859, 1124 |
| BssAI | RCCGGY | 1 cut(s) | 547 |
| BssECI | CCNNGG | 1 cut(s) | 1020 |
| BssMI | GATC | 7 cut(s) | 181, 632, 810, 1078, 1304, 1342, 1456 |
| BssT1I | CCWWGG | 1 cut(s) | 1020 |
| Bst2UI | CCWGG | 1 cut(s) | 947 |
| Bst4CI | ACNGT | 2 cut(s) | 544, 1423 |
| Bst6I | CTCTTC | 2 cut(s) | 246, 549 |
| BstAFI | CTTAAG | 2 cut(s) | 871, 1639 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1157 |
| BstC8I | GCNNGC | 3 cut(s) | 346, 1038, 1158 |
| BstDEI | CTNAG | 9 cut(s) | 124, 156, 226, 241, 337, 976, 1187, 1322, 1613 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 265 |
| BstF5I | GGATG | 3 cut(s) | 238, 955, 1030 |
| BstKTI | GATC | 7 cut(s) | 184, 635, 813, 1081, 1307, 1345, 1459 |
| BstMAI | GTCTC | 4 cut(s) | 244, 248, 392, 1058 |
| BstMBI | GATC | 7 cut(s) | 181, 632, 810, 1078, 1304, 1342, 1456 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 111, 350, 890, 919, 1157, 1223, 1510 |
| BstNI | CCWGG | 1 cut(s) | 947 |
| BstNSI | RCATGY | 3 cut(s) | 348, 1160, 1320 |
| BstSCI | CCNGG | 1 cut(s) | 945 |
| BstSFI | CTRYAG | 3 cut(s) | 540, 917, 1000 |
| BstV1I | GCAGC | 2 cut(s) | 900, 902 |
| BstV2I | GAAGAC | 2 cut(s) | 660, 766 |
| BstX2I | RGATCY | 1 cut(s) | 181 |
| BstYI | RGATCY | 1 cut(s) | 181 |
| BtsCI | GGATG | 3 cut(s) | 238, 955, 1030 |
| BtsIMutI | CAGTG | 1 cut(s) | 55 |
| Cac8I | GCNNGC | 3 cut(s) | 346, 1038, 1158 |
| CciI | TCATGA | 3 cut(s) | 901, 1425, 1453 |
| Cfr10I | RCCGGY | 1 cut(s) | 547 |
| Cfr13I | GGNCC | 1 cut(s) | 1168 |
| Csp6I | GTAC | 4 cut(s) | 545, 1117, 1314, 1499 |
| CspAI | ACCGGT | 1 cut(s) | 547 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1128, 1163 |
| CviAII | CATG | 9 cut(s) | 345, 902, 1157, 1243, 1317, 1426, 1438, 1454, 1562 |
| CviQI | GTAC | 4 cut(s) | 545, 1117, 1314, 1499 |
| DdeI | CTNAG | 9 cut(s) | 124, 156, 226, 241, 337, 976, 1187, 1322, 1613 |
| DpnI | GATC | 7 cut(s) | 183, 634, 812, 1080, 1306, 1344, 1458 |
| DpnII | GATC | 7 cut(s) | 181, 632, 810, 1078, 1304, 1342, 1456 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1531 |
| Eam1104I | CTCTTC | 2 cut(s) | 246, 549 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1531 |
| EarI | CTCTTC | 2 cut(s) | 246, 549 |
| Ecl136II | GAGCTC | 1 cut(s) | 467 |
| Eco130I | CCWWGG | 1 cut(s) | 1020 |
| Eco24I | GRGCYC | 3 cut(s) | 116, 469, 1412 |
| Eco31I | GGTCTC | 1 cut(s) | 1058 |
| Eco32I | GATATC | 1 cut(s) | 484 |
| Eco47I | GGWCC | 1 cut(s) | 1168 |
| Eco53kI | GAGCTC | 1 cut(s) | 467 |
| Eco57I | CTGAAG | 2 cut(s) | 396, 1434 |
| Eco88I | CYCGRG | 1 cut(s) | 511 |
| EcoICRI | GAGCTC | 1 cut(s) | 467 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 265 |
| EcoRII | CCWGG | 1 cut(s) | 945 |
| EcoRV | GATATC | 1 cut(s) | 484 |
| EcoT14I | CCWWGG | 1 cut(s) | 1020 |
| EcoT38I | GRGCYC | 3 cut(s) | 116, 469, 1412 |
| ErhI | CCWWGG | 1 cut(s) | 1020 |
| FaeI | CATG | 9 cut(s) | 348, 905, 1160, 1246, 1320, 1429, 1441, 1457, 1565 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 20, 52, 426, 458 |
| FaqI | GGGAC | 1 cut(s) | 1384 |
| FatI | CATG | 9 cut(s) | 344, 901, 1156, 1242, 1316, 1425, 1437, 1453, 1561 |
| FauI | CCCGC | 1 cut(s) | 886 |
| FbaI | TGATCA | 1 cut(s) | 1078 |
| Fnu4HI | GCNGC | 2 cut(s) | 891, 914 |
| FokI | GGATG | 3 cut(s) | 245, 962, 1037 |
| FriOI | GRGCYC | 3 cut(s) | 116, 469, 1412 |
| Fsp4HI | GCNGC | 2 cut(s) | 891, 914 |
| FspBI | CTAG | 7 cut(s) | 174, 452, 993, 1010, 1161, 1311, 1660 |
| GluI | GCNGC | 2 cut(s) | 891, 914 |
| GsaI | CCCAGC | 1 cut(s) | 883 |
| HapII | CCGG | 1 cut(s) | 548 |
| Hin1II | CATG | 9 cut(s) | 348, 905, 1160, 1246, 1320, 1429, 1441, 1457, 1565 |
| HinfI | GANTC | 4 cut(s) | 439, 1098, 1299, 1625 |
| HpaII | CCGG | 1 cut(s) | 548 |
| HphI | GGTGA | 2 cut(s) | 176, 820 |
| Hpy166II | GTNNAC | 2 cut(s) | 196, 1182 |
| Hpy188III | TCNNGA | 7 cut(s) | 495, 636, 729, 902, 1140, 1426, 1454 |
| Hpy8I | GTNNAC | 2 cut(s) | 196, 1182 |
| HpyAV | CCTTC | 3 cut(s) | 84, 155, 305 |
| HpyCH4III | ACNGT | 2 cut(s) | 544, 1423 |
| HpyCH4IV | ACGT | 1 cut(s) | 588 |
| HpyCH4V | TGCA | 8 cut(s) | 308, 348, 376, 448, 1036, 1060, 1067, 1271 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 111, 350, 890, 919, 1157, 1223, 1510 |
| HpyF3I | CTNAG | 9 cut(s) | 124, 156, 226, 241, 337, 976, 1187, 1322, 1613 |
| HpySE526I | ACGT | 1 cut(s) | 588 |
| Hsp92II | CATG | 9 cut(s) | 348, 905, 1160, 1246, 1320, 1429, 1441, 1457, 1565 |
| Ksp22I | TGATCA | 1 cut(s) | 1078 |
| Kzo9I | GATC | 7 cut(s) | 181, 632, 810, 1078, 1304, 1342, 1456 |
| LmnI | GCTCC | 2 cut(s) | 464, 963 |
| Lsp1109I | GCAGC | 2 cut(s) | 900, 902 |
| LweI | GCATC | 3 cut(s) | 288, 362, 749 |
| MaeI | CTAG | 7 cut(s) | 174, 452, 993, 1010, 1161, 1311, 1660 |
| MaeII | ACGT | 1 cut(s) | 588 |
| MaeIII | GTNAC | 3 cut(s) | 287, 369, 1533 |
| MalI | GATC | 7 cut(s) | 183, 634, 812, 1080, 1306, 1344, 1458 |
| MboI | GATC | 7 cut(s) | 181, 632, 810, 1078, 1304, 1342, 1456 |
| MflI | RGATCY | 1 cut(s) | 181 |
| MhlI | GDGCHC | 4 cut(s) | 116, 469, 968, 1412 |
| MluCI | AATT | 9 cut(s) | 673, 693, 745, 828, 1173, 1228, 1266, 1382, 1474 |
| MmeI | TCCRAC | 1 cut(s) | 408 |
| MseI | TTAA | 9 cut(s) | 384, 422, 504, 708, 804, 831, 872, 1031, 1640 |
| MspA1I | CMGCKG | 1 cut(s) | 893 |
| MspCI | CTTAAG | 2 cut(s) | 871, 1639 |
| MspI | CCGG | 1 cut(s) | 548 |
| MspR9I | CCNGG | 1 cut(s) | 947 |
| MvaI | CCWGG | 1 cut(s) | 947 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 111, 350, 890, 919, 1157, 1223, 1510 |
| NdeII | GATC | 7 cut(s) | 181, 632, 810, 1078, 1304, 1342, 1456 |
| NlaIII | CATG | 9 cut(s) | 348, 905, 1160, 1246, 1320, 1429, 1441, 1457, 1565 |
| NlaIV | GGNNCC | 2 cut(s) | 273, 1169 |
| NmuCI | GTSAC | 2 cut(s) | 287, 1533 |
| NspI | RCATGY | 3 cut(s) | 348, 1160, 1320 |
| PaeI | GCATGC | 2 cut(s) | 348, 1160 |
| PaeR7I | CTCGAG | 1 cut(s) | 511 |
| PagI | TCATGA | 3 cut(s) | 901, 1425, 1453 |
| PciI | ACATGT | 1 cut(s) | 1316 |
| PfeI | GAWTC | 4 cut(s) | 439, 1098, 1299, 1625 |
| PinAI | ACCGGT | 1 cut(s) | 547 |
| PkrI | GCNGC | 2 cut(s) | 892, 915 |
| PscI | ACATGT | 1 cut(s) | 1316 |
| PsiI | TTATAA | 1 cut(s) | 959 |
| Psp124BI | GAGCTC | 1 cut(s) | 469 |
| Psp6I | CCWGG | 1 cut(s) | 945 |
| PspFI | CCCAGC | 1 cut(s) | 879 |
| PspGI | CCWGG | 1 cut(s) | 945 |
| PspN4I | GGNNCC | 2 cut(s) | 273, 1169 |
| PspPI | GGNCC | 1 cut(s) | 1168 |
| PspXI | VCTCGAGB | 1 cut(s) | 511 |
| PsuI | RGATCY | 1 cut(s) | 181 |
| RsaI | GTAC | 4 cut(s) | 546, 1118, 1315, 1500 |
| RsaNI | GTAC | 4 cut(s) | 545, 1117, 1314, 1499 |
| SacI | GAGCTC | 1 cut(s) | 469 |
| SaqAI | TTAA | 9 cut(s) | 384, 422, 504, 708, 804, 831, 872, 1031, 1640 |
| SatI | GCNGC | 2 cut(s) | 891, 914 |
| Sau3AI | GATC | 7 cut(s) | 181, 632, 810, 1078, 1304, 1342, 1456 |
| Sau96I | GGNCC | 1 cut(s) | 1168 |
| ScaI | AGTACT | 1 cut(s) | 1118 |
| ScrFI | CCNGG | 1 cut(s) | 947 |
| SduI | GDGCHC | 4 cut(s) | 116, 469, 968, 1412 |
| SfaNI | GCATC | 3 cut(s) | 288, 362, 749 |
| SfcI | CTRYAG | 3 cut(s) | 540, 917, 1000 |
| Sfr274I | CTCGAG | 1 cut(s) | 511 |
| SinI | GGWCC | 1 cut(s) | 1168 |
| SlaI | CTCGAG | 1 cut(s) | 511 |
| SmlI | CTYRAG | 6 cut(s) | 26, 511, 871, 1084, 1538, 1639 |
| SmoI | CTYRAG | 6 cut(s) | 26, 511, 871, 1084, 1538, 1639 |
| SphI | GCATGC | 2 cut(s) | 348, 1160 |
| Sse9I | AATT | 9 cut(s) | 673, 693, 745, 828, 1173, 1228, 1266, 1382, 1474 |
| SsiI | CCGC | 1 cut(s) | 893 |
| SspMI | CTAG | 7 cut(s) | 174, 452, 993, 1010, 1161, 1311, 1660 |
| SstI | GAGCTC | 1 cut(s) | 469 |
| StyD4I | CCNGG | 1 cut(s) | 945 |
| StyI | CCWWGG | 1 cut(s) | 1020 |
| TaaI | ACNGT | 2 cut(s) | 544, 1423 |
| TaiI | ACGT | 1 cut(s) | 591 |
| TaqI | TCGA | 3 cut(s) | 494, 512, 1219 |
| TasI | AATT | 9 cut(s) | 673, 693, 745, 828, 1173, 1228, 1266, 1382, 1474 |
| TatI | WGTACW | 2 cut(s) | 1116, 1313 |
| TfiI | GAWTC | 4 cut(s) | 439, 1098, 1299, 1625 |
| Tru1I | TTAA | 9 cut(s) | 384, 422, 504, 708, 804, 831, 872, 1031, 1640 |
| Tru9I | TTAA | 9 cut(s) | 384, 422, 504, 708, 804, 831, 872, 1031, 1640 |
| TscAI | CASTG | 1 cut(s) | 62 |
| TseFI | GTSAC | 2 cut(s) | 287, 1533 |
| TseI | GCWGC | 2 cut(s) | 890, 913 |
| Tsp45I | GTSAC | 2 cut(s) | 287, 1533 |
| TspDTI | ATGAA | 9 cut(s) | 35, 666, 714, 890, 918, 1259, 1442, 1454, 1622 |
| TspGWI | ACGGA | 1 cut(s) | 1167 |
| TspRI | CASTG | 1 cut(s) | 62 |
| Vha464I | CTTAAG | 2 cut(s) | 871, 1639 |
| VpaK11BI | GGWCC | 1 cut(s) | 1168 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 265 |
| XapI | RAATTY | 3 cut(s) | 1173, 1382, 1474 |
| XceI | RCATGY | 3 cut(s) | 348, 1160, 1320 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 693 |
| XhoI | CTCGAG | 1 cut(s) | 511 |
| XspI | CTAG | 7 cut(s) | 174, 452, 993, 1010, 1161, 1311, 1660 |
| ZrmI | AGTACT | 1 cut(s) | 1118 |