Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007140

Physical Location & Seq

Genomic Coordinates Reverse (-)

63401819 .. 63405104

Gene Structure 3286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG466800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGTTTGGGTTTTAGGCTGAACCTCAAGTGTGGTTTTCCAATTCATAATTCTCATTGGCAGACCAGTTCTCCTTCCAAGCTTTCTTCAACTTCTGTTAGAGGCAGGGAGGGCTCTTTCAGTTCAGCAAGGCTGTCCCCTTTGTCTGTTATTTCTGAGGAATGTGAGACTTCTAATAAAGATTCTTTCAAAGTGTACACGTGTCCATCTGCATCCCCACAACTCTTAGATGATGGTTACTCAGAAGTGGAAGAGAAGATGAACATTAGGGGGATGTCAAAGAGTGGCTCACCTAACATGATTGATGATAAAGAGCACAGCTTTATATCCAGTGCAGGGTTAAGAACATCTCATTTTAGCTTGTTGCTGCAAAATCTTAATGTTTTGGAGGAGACTTTTGCTGATTCAGATGTGTCAAAGTTGGAAAAGGAGATCCTTTCGCAATTAGGAAGGCTTGGAGCTCTGAAGTTATTTGATATTTGTCTATCGAGAACGCTTAAAACCTCGAGCTTTTTGGATTTATCAGACATACCTACTGAGCCGATTGAAGAGCATAAGATGGAAAGGATGAATATTGTCCGTTCTGGCAAAAGGGAAGAACGAAAATTAAGGAAAAGAACATCAGATGATTCCAAAAAGTTTACTGGTTCCTTGCCTTTAAAACCAATGAAGGAAGGTTTTAAAAAGCCTACTCCATCATTTAGAAGAGCATCGAATTCTAGAAGTCAAAGACTATTGTTGGCTAAAAATGAGGCAGAAATGTCAGTCGGAGTTAAGGTGATCGCTGACTTGGAGAGGCTTAAAGCAACGTTGGAGAAGGAAACTGGTAAAGTACCGACCTTAAGATGCTGGGCAGAAGCAGCTGGAGTTGATGAAAAGGTGCTGCAACAACAATTGCATTTCGGTTGGTATTGCCAAGATGAGCTTGTAAGGAGCAGTCGGTCCTTGGTTCTATACCTTGCTCGAAACTATAGAGGACTTGGAGTAGCCTTGGATGATTTGCTGCAGGCTGGAAACCTGGGACTCCTACAAGGTGCAGAAAGATTTGATCCCTCGCGGGGTTACAGATTCTCGACCTATGTCCAATACTGGATAAGAAAATCAATGTCAAGATTGCTGGCACAACATGCCAGAGGGATCAAAATTCCTGTATGTTCCTCTTCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000990 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016987 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0097747 GO:0104004 GO:0140098 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2000142 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

389

Amino Acids

43.67

Weight (kDa)

9.37

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sigma70_r2	PF04542	309 - 378	1.9e-16	Sigma-70 region 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53920 AT3G53920
fragaria_vesca	FvH4_2g35110 FvH4_2g35110 FvH4_2g35110
malus_domestica	MD08G1108600.v1.1 MD15G1089100.v1.1
prunus_persica	Prupe.1G443200_v2.0.a1 Prupe.1G443200_v2.0.a1 Prupe.1G443200_v2.0.a1
pyrus_communis	pycom08g09050 pycom15g08350
rosa_chinensis	RchiOBHm_Chr6g0306861
rosa_laevigata	RLG00000010760
rosa_multiflora	Rmu_sc0009381.1_g000005
rosa_roxburghii	Rroxscaffold_7G00161410
rosa_rugosa	Rorug06G0353600 Rorug06G0353700 Rorug06G0353800 Rorug06G0353900
rosa_samantha	Rh6AG465400 Rh6BG435400 Rh6CG479800 Rh6DG466800
rosa_wichuraiana	Rw6G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1057
AciI	CCGC	1 cut(s)	1057
AclI	AACGTT	1 cut(s)	809
AclWI	GGATC	3 cut(s)	427, 1043, 1145
AcsI	RAATTY	2 cut(s)	715, 1143
AcuI	CTGAAG	1 cut(s)	485
AcvI	CACGTG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	197, 834
AfiI	CCNNNNNNNGG	2 cut(s)	336, 1058
AflII	CTTAAG	1 cut(s)	841
AflIII	ACRYGT	2 cut(s)	198, 200
AgsI	TTSAA	3 cut(s)	90, 190, 548
AjnI	CCWGG	1 cut(s)	1017
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
AluBI	AGCT	7 cut(s)	82, 321, 360, 461, 510, 863, 925
AluI	AGCT	7 cut(s)	82, 321, 360, 461, 510, 863, 925
Alw21I	GWGCWC	2 cut(s)	318, 463
Alw26I	GTCTC	2 cut(s)	161, 386
AlwI	GGATC	3 cut(s)	427, 1043, 1145
Ama87I	CYCGRG	1 cut(s)	505
ApeKI	GCWGC	4 cut(s)	367, 860, 883, 1003
ApoI	RAATTY	2 cut(s)	715, 1143
AspS9I	GGNCC	1 cut(s)	942
AsuHPI	GGTGA	2 cut(s)	282, 790
AvaI	CYCGRG	1 cut(s)	505
AvaII	GGWCC	1 cut(s)	942
BanII	GRGCYC	2 cut(s)	116, 463
BbrPI	CACGTG	1 cut(s)	201
Bbv12I	GWGCWC	2 cut(s)	318, 463
BbvI	GCAGC	4 cut(s)	354, 870, 872, 990
BccI	CCATC	4 cut(s)	214, 227, 553, 703
BciT130I	CCWGG	1 cut(s)	1019
BcoDI	GTCTC	2 cut(s)	161, 386
BfaI	CTAG	1 cut(s)	720
BfmI	CTRYAG	2 cut(s)	970, 1004
BfrI	CTTAAG	1 cut(s)	841
BisI	GCNGC	4 cut(s)	368, 861, 884, 1004
BlsI	GCNGC	4 cut(s)	369, 862, 885, 1005
Bme1390I	CCNGG	1 cut(s)	1019
Bme18I	GGWCC	1 cut(s)	942
BmeT110I	CYCGRG	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	942
BmiI	GGNNCC	1 cut(s)	649
BmrFI	CCNGG	1 cut(s)	1019
BmsI	GCATC	3 cut(s)	221, 719, 836
BoxI	GACNNNNGTC	1 cut(s)	1079
BpmI	CTGGAG	1 cut(s)	885
BpuEI	CTTGAG	1 cut(s)	11
BsaAI	YACGTR	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	945, 990, 1018
BsaXI	ACNNNNNCTCC	4 cut(s)	55, 85, 762, 792
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 1058
Bse1I	ACTGG	5 cut(s)	66, 330, 649, 829, 1094
BseBI	CCWGG	1 cut(s)	1019
BseDI	CCNNGG	3 cut(s)	945, 990, 1018
BseGI	GGATG	4 cut(s)	212, 279, 573, 1000
BseLI	CCNNNNNNNGG	2 cut(s)	336, 1058
BseMII	CTCAG	3 cut(s)	147, 255, 528
BseNI	ACTGG	5 cut(s)	66, 330, 649, 829, 1094
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	4 cut(s)	354, 870, 872, 990
BseYI	CCCAGC	1 cut(s)	849
BsgI	GTGCAG	2 cut(s)	354, 1056
Bsh1236I	CGCG	1 cut(s)	1057
BsiHKAI	GWGCWC	2 cut(s)	318, 463
BsiHKCI	CYCGRG	1 cut(s)	505
BslFI	GGGAC	2 cut(s)	121, 1035
BslI	CCNNNNNNNGG	2 cut(s)	336, 1058
BsmAI	GTCTC	2 cut(s)	161, 386
BsmFI	GGGAC	2 cut(s)	121, 1035
BsoBI	CYCGRG	1 cut(s)	505
Bsp1286I	GDGCHC	3 cut(s)	116, 318, 463
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	4 cut(s)	432, 780, 1048, 1137
BspACI	CCGC	1 cut(s)	1057
BspCNI	CTCAG	3 cut(s)	148, 254, 529
BspFNI	CGCG	1 cut(s)	1057
BspLI	GGNNCC	1 cut(s)	649
BspMAI	CTGCAG	1 cut(s)	1008
BspPI	GGATC	3 cut(s)	427, 1043, 1145
BspQI	GCTCTTC	2 cut(s)	543, 700
BspTI	CTTAAG	1 cut(s)	841
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	5 cut(s)	66, 330, 649, 829, 1094
BssECI	CCNNGG	3 cut(s)	945, 990, 1018
BssMI	GATC	4 cut(s)	432, 780, 1048, 1137
BssT1I	CCWWGG	2 cut(s)	945, 990
Bst2UI	CCWGG	1 cut(s)	1019
Bst6I	CTCTTC	4 cut(s)	246, 543, 700, 1165
BstAFI	CTTAAG	1 cut(s)	841
BstAPI	GCANNNNNTGC	1 cut(s)	1127
BstAUI	TGTACA	1 cut(s)	195
BstBAI	YACGTR	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	1008, 1119
BstDEI	CTNAG	4 cut(s)	156, 226, 241, 537
BstF5I	GGATG	4 cut(s)	212, 279, 573, 1000
BstFNI	CGCG	1 cut(s)	1057
BstKTI	GATC	4 cut(s)	435, 783, 1051, 1140
BstMAI	GTCTC	2 cut(s)	161, 386
BstMBI	GATC	4 cut(s)	432, 780, 1048, 1137
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 860, 1127
BstNI	CCWGG	1 cut(s)	1019
BstNSI	RCATGY	1 cut(s)	1130
BstPAI	GACNNNNGTC	1 cut(s)	1079
BstSCI	CCNGG	1 cut(s)	1017
BstSFI	CTRYAG	2 cut(s)	970, 1004
BstUI	CGCG	1 cut(s)	1057
BstV1I	GCAGC	4 cut(s)	354, 870, 872, 990
BstX2I	RGATCY	1 cut(s)	432
BstYI	RGATCY	1 cut(s)	432
BtsCI	GGATG	4 cut(s)	212, 279, 573, 1000
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	1008, 1119
Cfr13I	GGNCC	1 cut(s)	942
Csp6I	GTAC	2 cut(s)	196, 833
CviAII	CATG	2 cut(s)	298, 1127
CviQI	GTAC	2 cut(s)	196, 833
DdeI	CTNAG	4 cut(s)	156, 226, 241, 537
DpnI	GATC	4 cut(s)	434, 782, 1050, 1139
DpnII	GATC	4 cut(s)	432, 780, 1048, 1137
DraI	TTTAAA	2 cut(s)	660, 682
Eam1104I	CTCTTC	4 cut(s)	246, 543, 700, 1165
EarI	CTCTTC	4 cut(s)	246, 543, 700, 1165
Ecl136II	GAGCTC	1 cut(s)	461
Eco130I	CCWWGG	2 cut(s)	945, 990
Eco24I	GRGCYC	2 cut(s)	116, 463
Eco47I	GGWCC	1 cut(s)	942
Eco53kI	GAGCTC	1 cut(s)	461
Eco57I	CTGAAG	1 cut(s)	485
Eco72I	CACGTG	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	505
EcoICRI	GAGCTC	1 cut(s)	461
EcoRI	GAATTC	1 cut(s)	715
EcoRII	CCWGG	1 cut(s)	1017
EcoT14I	CCWWGG	2 cut(s)	945, 990
EcoT38I	GRGCYC	2 cut(s)	116, 463
ErhI	CCWWGG	2 cut(s)	945, 990
FaeI	CATG	2 cut(s)	301, 1130
FalI	AAGNNNNNCTT	2 cut(s)	909, 941
FaqI	GGGAC	2 cut(s)	121, 1035
FatI	CATG	2 cut(s)	297, 1126
FauI	CCCGC	1 cut(s)	1050
Fnu4HI	GCNGC	4 cut(s)	368, 861, 884, 1004
FokI	GGATG	4 cut(s)	199, 286, 580, 1007
FriOI	GRGCYC	2 cut(s)	116, 463
Fsp4HI	GCNGC	4 cut(s)	368, 861, 884, 1004
FspBI	CTAG	1 cut(s)	720
GluI	GCNGC	4 cut(s)	368, 861, 884, 1004
GsaI	CCCAGC	1 cut(s)	853
GsuI	CTGGAG	1 cut(s)	885
Hin1II	CATG	2 cut(s)	301, 1130
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	5 cut(s)	182, 404, 629, 1023, 1068
HphI	GGTGA	2 cut(s)	282, 790
Hpy166II	GTNNAC	3 cut(s)	196, 198, 642
Hpy188I	TCNGA	7 cut(s)	157, 244, 409, 465, 526, 625, 770
Hpy188III	TCNNGA	4 cut(s)	489, 720, 1072, 1110
Hpy8I	GTNNAC	3 cut(s)	196, 198, 642
HpyAV	CCTTC	5 cut(s)	84, 444, 664, 668, 811
HpyCH4IV	ACGT	2 cut(s)	200, 809
HpyCH4V	TGCA	7 cut(s)	212, 335, 370, 886, 898, 1006, 1037
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 860, 1127
HpyF3I	CTNAG	4 cut(s)	156, 226, 241, 537
HpySE526I	ACGT	2 cut(s)	200, 809
Hsp92II	CATG	2 cut(s)	301, 1130
Kzo9I	GATC	4 cut(s)	432, 780, 1048, 1137
LguI	GCTCTTC	2 cut(s)	543, 700
LmnI	GCTCC	2 cut(s)	458, 933
Lsp1109I	GCAGC	4 cut(s)	354, 870, 872, 990
LweI	GCATC	3 cut(s)	221, 719, 836
MaeI	CTAG	1 cut(s)	720
MaeII	ACGT	2 cut(s)	200, 809
MaeIII	GTNAC	2 cut(s)	236, 1061
MalI	GATC	4 cut(s)	434, 782, 1050, 1139
MboI	GATC	4 cut(s)	432, 780, 1048, 1137
MboII	GAAGA	7 cut(s)	78, 263, 268, 560, 608, 717, 1152
MfeI	CAATTG	1 cut(s)	893
MflI	RGATCY	1 cut(s)	432
MhlI	GDGCHC	3 cut(s)	116, 318, 463
MluCI	AATT	7 cut(s)	42, 49, 443, 605, 715, 893, 1143
MlyI	GAGTC	1 cut(s)	1017
MmeI	TCCRAC	3 cut(s)	402, 748, 792
MseI	TTAA	9 cut(s)	341, 378, 498, 608, 659, 681, 774, 801, 842
MspA1I	CMGCKG	1 cut(s)	863
MspCI	CTTAAG	1 cut(s)	841
MspR9I	CCNGG	1 cut(s)	1019
MunI	CAATTG	1 cut(s)	893
MvaI	CCWGG	1 cut(s)	1019
MvnI	CGCG	1 cut(s)	1057
MwoI	GCNNNNNNNGC	3 cut(s)	111, 860, 1127
NdeII	GATC	4 cut(s)	432, 780, 1048, 1137
NlaIII	CATG	2 cut(s)	301, 1130
NlaIV	GGNNCC	1 cut(s)	649
NspI	RCATGY	1 cut(s)	1130
PaeR7I	CTCGAG	1 cut(s)	505
PciSI	GCTCTTC	2 cut(s)	543, 700
PfeI	GAWTC	4 cut(s)	182, 404, 629, 1068
PkrI	GCNGC	4 cut(s)	369, 862, 885, 1005
PleI	GAGTC	1 cut(s)	1017
PmaCI	CACGTG	1 cut(s)	201
PmlI	CACGTG	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	1017
Ppu21I	YACGTR	1 cut(s)	201
PshAI	GACNNNNGTC	1 cut(s)	1079
Psp124BI	GAGCTC	1 cut(s)	463
Psp1406I	AACGTT	1 cut(s)	809
Psp6I	CCWGG	1 cut(s)	1017
PspCI	CACGTG	1 cut(s)	201
PspFI	CCCAGC	1 cut(s)	849
PspGI	CCWGG	1 cut(s)	1017
PspN4I	GGNNCC	1 cut(s)	649
PspPI	GGNCC	1 cut(s)	942
PspXI	VCTCGAGB	1 cut(s)	505
PstI	CTGCAG	1 cut(s)	1008
PsuI	RGATCY	1 cut(s)	432
PvuII	CAGCTG	1 cut(s)	863
RsaI	GTAC	2 cut(s)	197, 834
RsaNI	GTAC	2 cut(s)	196, 833
SacI	GAGCTC	1 cut(s)	463
SapI	GCTCTTC	2 cut(s)	543, 700
SaqAI	TTAA	9 cut(s)	341, 378, 498, 608, 659, 681, 774, 801, 842
SatI	GCNGC	4 cut(s)	368, 861, 884, 1004
Sau3AI	GATC	4 cut(s)	432, 780, 1048, 1137
Sau96I	GGNCC	1 cut(s)	942
SchI	GAGTC	1 cut(s)	1017
ScrFI	CCNGG	1 cut(s)	1019
SduI	GDGCHC	3 cut(s)	116, 318, 463
SfaNI	GCATC	3 cut(s)	221, 719, 836
SfcI	CTRYAG	2 cut(s)	970, 1004
Sfr274I	CTCGAG	1 cut(s)	505
SinI	GGWCC	1 cut(s)	942
SlaI	CTCGAG	1 cut(s)	505
SmlI	CTYRAG	3 cut(s)	26, 505, 841
SmoI	CTYRAG	3 cut(s)	26, 505, 841
Sse9I	AATT	7 cut(s)	42, 49, 443, 605, 715, 893, 1143
SsiI	CCGC	1 cut(s)	1057
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	1 cut(s)	720
SstI	GAGCTC	1 cut(s)	463
StyD4I	CCNGG	1 cut(s)	1017
StyI	CCWWGG	2 cut(s)	945, 990
TaiI	ACGT	2 cut(s)	203, 812
TaqI	TCGA	5 cut(s)	488, 506, 713, 964, 1073
TaqII	GACCGA	1 cut(s)	930
TasI	AATT	7 cut(s)	42, 49, 443, 605, 715, 893, 1143
TatI	WGTACW	1 cut(s)	195
TfiI	GAWTC	4 cut(s)	182, 404, 629, 1068
Tru1I	TTAA	9 cut(s)	341, 378, 498, 608, 659, 681, 774, 801, 842
Tru9I	TTAA	9 cut(s)	341, 378, 498, 608, 659, 681, 774, 801, 842
TscAI	CASTG	1 cut(s)	337
TseI	GCWGC	4 cut(s)	367, 860, 883, 1003
TspDTI	ATGAA	5 cut(s)	35, 275, 584, 683, 888
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	1 cut(s)	337
Vha464I	CTTAAG	1 cut(s)	841
VpaK11BI	GGWCC	1 cut(s)	942
XapI	RAATTY	2 cut(s)	715, 1143
XbaI	TCTAGA	1 cut(s)	719
XceI	RCATGY	1 cut(s)	1130
XhoI	CTCGAG	1 cut(s)	505
XspI	CTAG	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.