Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007140

Physical Location & Seq

Genomic Coordinates Forward (+)

50215334 .. 50216365

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0353800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTCTGGATCATCCCATGTCATAAACAATCGGGTTTGGAAGATGGTATGGAAAATAGACACTCTCCCAAGGATCAAAATTTTCATGTGGAAGGTATTAAATGGGGCGGCTCCTTCTCTTTTGATTCTATATCGTAGAAGGATGACTAATTCTCCTCTTTGTCCCATCTGTGGAGCCTTTGAGGAATCATTTGAGCACATTCTACTACTATGCCCGTGGGTGGACCTAGTTTGGTTTGGCTCTCCTTTAGGTCTCAAAGTCAACAAACAACAAATTTCCTCTTTTGATAAATGGTTACTGAGTATTTCTGATACCTATCCTAAAGCAAGTGAGAAGAAGTGGGTACTTACATTGGTGAGTTTTCTGTGCTGGGCAATATGGAAAGCACGTTGTGATTATGTGTATCGACATCGGCAACCTTCCCCATCACAAGTCCTCTGCTATGCGGTGAGTCTGGCATGCGAGTTTTTGGAGGCCTCGGTCCAGAATCGGATTGGTGGAGCTCCCCTCTCCGACAACATTAATCAATGGACCCTTCCCCCACAAAATGCAGCTGCAATTAACTGTGATGCTTCTTGGAAGAGTCCATCGACTGGAGGACTGGGAACCATAATTAGAGATTACAGAGGCATGGTAATTTGTGGAGCTACTTTCAACACGTGCAGTGGATCAGTGATTATTGCTGAAGCACAGGCCATCCTTTTGGATTTGAACCTGGCAATTAAGCACAATTTGAAGAGAGTCAGAGTAGAATCTGATTCTTTAGAAGCAATCACCAAACTAAGGAAAGCCAACTCATGCGGGAATTGGAGGATTTCCCCTATCATTGGTGAAATTCATAAAAAAAGTCAGTTTTTTGATCACATTACCTGGGATTGGATTCCCCGTGAAGCGAATCGAGTCGCCCATGAGGCGGCCTCGCTTGCCATCCGGTCGGTGGGTCTTAACAGATGGGCCAACAGGCCACCACCTTCCCTCTCCACGGTACTTCGGAATGACGGTCTCCCATGCCCACATGGAAATGACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000990 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016987 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0097747 GO:0104004 GO:0140098 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2000142 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

343

Amino Acids

38.52

Weight (kDa)

9.3

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	9 - 78	1.6e-13	zinc-binding in reverse transcriptase
RVT_3	PF13456	188 - 308	1.4e-21	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53920 AT3G53920
fragaria_vesca	FvH4_2g35110 FvH4_2g35110 FvH4_2g35110
malus_domestica	MD08G1108600.v1.1 MD15G1089100.v1.1
prunus_persica	Prupe.1G443200_v2.0.a1 Prupe.1G443200_v2.0.a1 Prupe.1G443200_v2.0.a1
pyrus_communis	pycom08g09050 pycom15g08350
rosa_chinensis	RchiOBHm_Chr6g0306861
rosa_laevigata	RLG00000010760
rosa_multiflora	Rmu_sc0009381.1_g000005
rosa_roxburghii	Rroxscaffold_7G00161410
rosa_rugosa	Rorug06G0353600 Rorug06G0353700 Rorug06G0353800 Rorug06G0353900
rosa_samantha	Rh6AG465400 Rh6BG435400 Rh6CG479800 Rh6DG466800
rosa_wichuraiana	Rw6G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	593
AciI	CCGC	4 cut(s)	107, 446, 801, 914
AclWI	GGATC	3 cut(s)	16, 80, 676
AcsI	RAATTY	3 cut(s)	78, 273, 834
AcuI	CTGAAG	1 cut(s)	705
AcvI	CACGTG	1 cut(s)	660
AdeI	CACNNNGTG	1 cut(s)	392
AfaI	GTAC	2 cut(s)	345, 987
AfiI	CCNNNNNNNGG	9 cut(s)	170, 220, 593, 783, 827, 876, 913, 937, 982
AflIII	ACRYGT	1 cut(s)	657
AgsI	TTSAA	3 cut(s)	655, 712, 736
AjnI	CCWGG	2 cut(s)	714, 869
AluBI	AGCT	3 cut(s)	503, 554, 647
AluI	AGCT	3 cut(s)	503, 554, 647
Alw21I	GWGCWC	2 cut(s)	198, 505
Alw26I	GTCTC	2 cut(s)	257, 1007
AlwI	GGATC	3 cut(s)	16, 80, 676
AoxI	GGCC	5 cut(s)	474, 693, 915, 954, 962
ApeKI	GCWGC	2 cut(s)	551, 554
ApoI	RAATTY	3 cut(s)	78, 273, 834
AseI	ATTAAT	1 cut(s)	522
AspS9I	GGNCC	4 cut(s)	223, 481, 531, 954
AsuHPI	GGTGA	4 cut(s)	367, 460, 766, 842
AvaII	GGWCC	3 cut(s)	223, 481, 531
BanII	GRGCYC	1 cut(s)	505
BbrPI	CACGTG	1 cut(s)	660
Bbv12I	GWGCWC	2 cut(s)	198, 505
BbvI	GCAGC	2 cut(s)	541, 563
BccI	CCATC	7 cut(s)	37, 173, 433, 595, 704, 935, 945
BciT130I	CCWGG	2 cut(s)	716, 871
BclI	TGATCA	1 cut(s)	859
BcoDI	GTCTC	2 cut(s)	257, 1007
BfaI	CTAG	1 cut(s)	227
BglI	GCCNNNNNGGC	1 cut(s)	911
BisI	GCNGC	4 cut(s)	108, 552, 555, 915
BlsI	GCNGC	4 cut(s)	109, 553, 556, 916
Bme1390I	CCNGG	2 cut(s)	716, 871
Bme18I	GGWCC	3 cut(s)	223, 481, 531
BmgT120I	GGNCC	4 cut(s)	223, 481, 531, 954
BmiI	GGNNCC	4 cut(s)	111, 175, 533, 607
BmrFI	CCNGG	2 cut(s)	716, 871
BmrI	ACTGGG	1 cut(s)	611
BmsI	GCATC	1 cut(s)	559
BmuI	ACTGGG	1 cut(s)	611
BplI	GAGNNNNNCTC	4 cut(s)	492, 524, 902, 934
BpmI	CTGGAG	1 cut(s)	615
BsaAI	YACGTR	1 cut(s)	660
BsaBI	GATNNNNATC	1 cut(s)	315
BsaI	GGTCTC	2 cut(s)	257, 1007
BsaJI	CCNNGG	5 cut(s)	68, 215, 477, 870, 981
BsaWI	WCCGGW	1 cut(s)	930
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	9 cut(s)	170, 220, 593, 783, 827, 876, 913, 937, 982
Bse1I	ACTGG	2 cut(s)	598, 606
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	716, 871
BseDI	CCNNGG	5 cut(s)	68, 215, 477, 870, 981
BseGI	GGATG	4 cut(s)	11, 147, 696, 927
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	9 cut(s)	170, 220, 593, 783, 827, 876, 913, 937, 982
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	2 cut(s)	598, 606
BseRI	GAGGAG	1 cut(s)	144
BseXI	GCAGC	2 cut(s)	541, 563
BseYI	CCCAGC	1 cut(s)	369
BsgI	GTGCAG	1 cut(s)	682
Bsh1285I	CGRYCG	1 cut(s)	935
BshFI	GGCC	5 cut(s)	476, 695, 917, 956, 964
BsiEI	CGRYCG	1 cut(s)	935
BsiHKAI	GWGCWC	2 cut(s)	198, 505
BsiSI	CCGG	1 cut(s)	931
BslFI	GGGAC	1 cut(s)	147
BslI	CCNNNNNNNGG	9 cut(s)	170, 220, 593, 783, 827, 876, 913, 937, 982
BsmAI	GTCTC	2 cut(s)	257, 1007
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	5 cut(s)	476, 695, 917, 956, 964
Bso31I	GGTCTC	2 cut(s)	257, 1007
Bsp1286I	GDGCHC	2 cut(s)	198, 505
Bsp143I	GATC	4 cut(s)	8, 72, 668, 859
BspACI	CCGC	4 cut(s)	107, 446, 801, 914
BspANI	GGCC	5 cut(s)	476, 695, 917, 956, 964
BspCNI	CTCAG	1 cut(s)	291
BspLI	GGNNCC	4 cut(s)	111, 175, 533, 607
BspPI	GGATC	3 cut(s)	16, 80, 676
BspTNI	GGTCTC	2 cut(s)	257, 1007
BsrI	ACTGG	2 cut(s)	598, 606
BssECI	CCNNGG	5 cut(s)	68, 215, 477, 870, 981
BssMI	GATC	4 cut(s)	8, 72, 668, 859
BssT1I	CCWWGG	1 cut(s)	68
Bst2UI	CCWGG	2 cut(s)	716, 871
Bst4CI	ACNGT	3 cut(s)	566, 985, 1001
Bst6I	CTCTTC	2 cut(s)	575, 731
BstBAI	YACGTR	1 cut(s)	660
BstC8I	GCNNGC	2 cut(s)	460, 924
BstDEI	CTNAG	2 cut(s)	299, 782
BstDSI	CCRYGG	2 cut(s)	215, 981
BstF5I	GGATG	4 cut(s)	11, 147, 696, 927
BstKTI	GATC	4 cut(s)	11, 75, 671, 862
BstMAI	GTCTC	2 cut(s)	257, 1007
BstMBI	GATC	4 cut(s)	8, 72, 668, 859
BstMCI	CGRYCG	1 cut(s)	935
BstMWI	GCNNNNNNNGC	2 cut(s)	911, 923
BstNI	CCWGG	2 cut(s)	716, 871
BstNSI	RCATGY	1 cut(s)	462
BstSCI	CCNGG	2 cut(s)	714, 869
BstV1I	GCAGC	2 cut(s)	541, 563
BstXI	CCANNNNNNTGG	1 cut(s)	703
BsuRI	GGCC	5 cut(s)	476, 695, 917, 956, 964
BtgI	CCRYGG	2 cut(s)	215, 981
BtsCI	GGATG	4 cut(s)	11, 147, 696, 927
BtsI	GCAGTG	1 cut(s)	670
BtsIMutI	CAGTG	2 cut(s)	670, 678
Cac8I	GCNNGC	2 cut(s)	460, 924
Cfr13I	GGNCC	4 cut(s)	223, 481, 531, 954
Csp6I	GTAC	2 cut(s)	344, 986
CviAII	CATG	8 cut(s)	17, 85, 459, 631, 798, 908, 1008, 1016
CviQI	GTAC	2 cut(s)	344, 986
DdeI	CTNAG	2 cut(s)	299, 782
DpnI	GATC	4 cut(s)	10, 74, 670, 861
DpnII	GATC	4 cut(s)	8, 72, 668, 859
DraIII	CACNNNGTG	1 cut(s)	392
Eam1104I	CTCTTC	2 cut(s)	575, 731
EarI	CTCTTC	2 cut(s)	575, 731
Ecl136II	GAGCTC	1 cut(s)	503
Eco130I	CCWWGG	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	505
Eco31I	GGTCTC	2 cut(s)	257, 1007
Eco47I	GGWCC	3 cut(s)	223, 481, 531
Eco53kI	GAGCTC	1 cut(s)	503
Eco57I	CTGAAG	1 cut(s)	705
Eco72I	CACGTG	1 cut(s)	660
EcoICRI	GAGCTC	1 cut(s)	503
EcoRII	CCWGG	2 cut(s)	714, 869
EcoT14I	CCWWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	8 cut(s)	20, 88, 462, 634, 801, 911, 1011, 1019
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	8 cut(s)	16, 84, 458, 630, 797, 907, 1007, 1015
FauI	CCCGC	1 cut(s)	794
FbaI	TGATCA	1 cut(s)	859
Fnu4HI	GCNGC	4 cut(s)	108, 552, 555, 915
FokI	GGATG	3 cut(s)	154, 683, 914
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	4 cut(s)	108, 552, 555, 915
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	4 cut(s)	108, 552, 555, 915
GsaI	CCCAGC	1 cut(s)	373
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	5 cut(s)	476, 695, 917, 956, 964
HapII	CCGG	1 cut(s)	931
Hin1II	CATG	8 cut(s)	20, 88, 462, 634, 801, 911, 1011, 1019
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HpaII	CCGG	1 cut(s)	931
HphI	GGTGA	4 cut(s)	367, 460, 766, 842
Hpy166II	GTNNAC	2 cut(s)	223, 262
Hpy188I	TCNGA	6 cut(s)	310, 492, 514, 746, 757, 993
Hpy188III	TCNNGA	3 cut(s)	6, 484, 1029
Hpy8I	GTNNAC	2 cut(s)	223, 262
HpyAV	CCTTC	6 cut(s)	85, 123, 132, 429, 545, 981
HpyCH4III	ACNGT	3 cut(s)	566, 985, 1001
HpyCH4IV	ACGT	2 cut(s)	388, 659
HpyCH4V	TGCA	3 cut(s)	551, 557, 663
HpyF10VI	GCNNNNNNNGC	2 cut(s)	911, 923
HpyF3I	CTNAG	2 cut(s)	299, 782
HpySE526I	ACGT	2 cut(s)	388, 659
Hsp92II	CATG	8 cut(s)	20, 88, 462, 634, 801, 911, 1011, 1019
Ksp22I	TGATCA	1 cut(s)	859
Kzo9I	GATC	4 cut(s)	8, 72, 668, 859
LmnI	GCTCC	5 cut(s)	115, 173, 500, 508, 644
Lsp1109I	GCAGC	2 cut(s)	541, 563
LweI	GCATC	1 cut(s)	559
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	2 cut(s)	388, 659
MaeIII	GTNAC	1 cut(s)	294
MalI	GATC	4 cut(s)	10, 74, 670, 861
MboI	GATC	4 cut(s)	8, 72, 668, 859
MboII	GAAGA	4 cut(s)	52, 346, 592, 748
MhlI	GDGCHC	2 cut(s)	198, 505
MlyI	GAGTC	5 cut(s)	460, 592, 750, 909, 1019
MmeI	TCCRAC	1 cut(s)	537
MseI	TTAA	5 cut(s)	98, 522, 561, 723, 945
MslI	CAYNNNNRTG	1 cut(s)	1020
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	1 cut(s)	931
MspR9I	CCNGG	2 cut(s)	716, 871
MvaI	CCWGG	2 cut(s)	716, 871
MwoI	GCNNNNNNNGC	2 cut(s)	911, 923
NdeII	GATC	4 cut(s)	8, 72, 668, 859
NlaIII	CATG	8 cut(s)	20, 88, 462, 634, 801, 911, 1011, 1019
NlaIV	GGNNCC	4 cut(s)	111, 175, 533, 607
NspI	RCATGY	1 cut(s)	462
PaeI	GCATGC	1 cut(s)	462
PceI	AGGCCT	1 cut(s)	476
PfeI	GAWTC	7 cut(s)	124, 185, 487, 752, 758, 880, 895
PflMI	CCANNNNNTGG	1 cut(s)	593
PkrI	GCNGC	4 cut(s)	109, 553, 556, 916
PleI	GAGTC	5 cut(s)	459, 591, 749, 908, 1019
PmaCI	CACGTG	1 cut(s)	660
PmlI	CACGTG	1 cut(s)	660
PpsI	GAGTC	5 cut(s)	459, 591, 749, 908, 1019
Ppu21I	YACGTR	1 cut(s)	660
PshBI	ATTAAT	1 cut(s)	522
Psp124BI	GAGCTC	1 cut(s)	505
Psp6I	CCWGG	2 cut(s)	714, 869
PspCI	CACGTG	1 cut(s)	660
PspFI	CCCAGC	1 cut(s)	369
PspGI	CCWGG	2 cut(s)	714, 869
PspN4I	GGNNCC	4 cut(s)	111, 175, 533, 607
PspPI	GGNCC	4 cut(s)	223, 481, 531, 954
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	2 cut(s)	345, 987
RsaNI	GTAC	2 cut(s)	344, 986
RseI	CAYNNNNRTG	1 cut(s)	1020
SacI	GAGCTC	1 cut(s)	505
SaqAI	TTAA	5 cut(s)	98, 522, 561, 723, 945
SatI	GCNGC	4 cut(s)	108, 552, 555, 915
Sau3AI	GATC	4 cut(s)	8, 72, 668, 859
Sau96I	GGNCC	4 cut(s)	223, 481, 531, 954
SchI	GAGTC	5 cut(s)	460, 592, 750, 909, 1019
ScrFI	CCNGG	2 cut(s)	716, 871
SduI	GDGCHC	2 cut(s)	198, 505
SfaNI	GCATC	1 cut(s)	559
SinI	GGWCC	3 cut(s)	223, 481, 531
SmiMI	CAYNNNNRTG	1 cut(s)	1020
SphI	GCATGC	1 cut(s)	462
SseBI	AGGCCT	1 cut(s)	476
SsiI	CCGC	4 cut(s)	107, 446, 801, 914
SspMI	CTAG	1 cut(s)	227
SstI	GAGCTC	1 cut(s)	505
StuI	AGGCCT	1 cut(s)	476
StyD4I	CCNGG	2 cut(s)	714, 869
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	3 cut(s)	566, 985, 1001
TaiI	ACGT	2 cut(s)	391, 662
TaqI	TCGA	3 cut(s)	406, 590, 898
TaqII	GACCGA	1 cut(s)	469
TauI	GCSGC	2 cut(s)	110, 917
TfiI	GAWTC	7 cut(s)	124, 185, 487, 752, 758, 880, 895
Tru1I	TTAA	5 cut(s)	98, 522, 561, 723, 945
Tru9I	TTAA	5 cut(s)	98, 522, 561, 723, 945
TscAI	CASTG	2 cut(s)	670, 678
TseI	GCWGC	2 cut(s)	551, 554
TspDTI	ATGAA	2 cut(s)	73, 827
TspRI	CASTG	2 cut(s)	670, 678
Van91I	CCANNNNNTGG	1 cut(s)	593
VpaK11BI	GGWCC	3 cut(s)	223, 481, 531
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	3 cut(s)	78, 273, 834
XceI	RCATGY	1 cut(s)	462
XcmI	CCANNNNNNNNNTGG	2 cut(s)	491, 934
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.