Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007140

Physical Location & Seq

Genomic Coordinates Forward (+)

50212352 .. 50212932

Gene Structure 581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0353700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGAATCCTCAGTGAAGCATGCTTTTGTCGTGAAAGTTGTGGGTCGGACTGGATCCCGAGGACAGGTGACTCAGGTTAAAGTCAAGTTTATGGACGATCACAATCGGCACATCATGAGGAATGTCAAAGGACCAGTGAGGGAGGGGATATCCTTACCTTGCTCGAGTCTGAAAGGGAAGCAAGGAGGTTGCGTTGAAATGGAGGCTTTATTCCAGCGTTTGTTTTGCTTAAATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000990 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016987 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0097747 GO:0104004 GO:0140098 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2000142 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

79

Amino Acids

8.78

Weight (kDa)

9.94

Isoelectric Point (pI)

24.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S28e	PF01200	5 - 49	7.4e-20	Ribosomal protein S28e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53920 AT3G53920
fragaria_vesca	FvH4_2g35110 FvH4_2g35110 FvH4_2g35110
malus_domestica	MD08G1108600.v1.1 MD15G1089100.v1.1
prunus_persica	Prupe.1G443200_v2.0.a1 Prupe.1G443200_v2.0.a1 Prupe.1G443200_v2.0.a1
pyrus_communis	pycom08g09050 pycom15g08350
rosa_chinensis	RchiOBHm_Chr6g0306861
rosa_laevigata	RLG00000010760
rosa_multiflora	Rmu_sc0009381.1_g000005
rosa_roxburghii	Rroxscaffold_7G00161410
rosa_rugosa	Rorug06G0353600 Rorug06G0353700 Rorug06G0353800 Rorug06G0353900
rosa_samantha	Rh6AG465400 Rh6BG435400 Rh6CG479800 Rh6DG466800
rosa_wichuraiana	Rw6G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	48, 61
AcsI	RAATTY	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	197
AlwI	GGATC	2 cut(s)	48, 61
Ama87I	CYCGRG	2 cut(s)	57, 163
ApoI	RAATTY	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	79
AvaI	CYCGRG	2 cut(s)	57, 163
AvaII	GGWCC	1 cut(s)	131
BamHI	GGATCC	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	2 cut(s)	57, 163
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	58
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	2 cut(s)	55, 134
Bse8I	GATNNNNATC	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	58
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	2 cut(s)	24, 86
BseNI	ACTGG	2 cut(s)	55, 134
BsiHKCI	CYCGRG	2 cut(s)	57, 163
BslI	CCNNNNNNNGG	1 cut(s)	64
BsoBI	CYCGRG	2 cut(s)	57, 163
Bsp143I	GATC	2 cut(s)	53, 97
BspCNI	CTCAG	2 cut(s)	23, 85
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	55
BspPI	GGATC	2 cut(s)	48, 61
BsrI	ACTGG	2 cut(s)	55, 134
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	2 cut(s)	53, 97
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	3 cut(s)	10, 72, 237
BstKTI	GATC	2 cut(s)	56, 100
BstMBI	GATC	2 cut(s)	53, 97
BstNSI	RCATGY	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BtsIMutI	CAGTG	2 cut(s)	18, 141
Cac8I	GCNNGC	1 cut(s)	21
CciI	TCATGA	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	131
CviAII	CATG	2 cut(s)	20, 115
CviJI	RGCY	1 cut(s)	206
CviKI_1	RGCY	1 cut(s)	206
DdeI	CTNAG	3 cut(s)	10, 72, 237
DpnI	GATC	2 cut(s)	55, 99
DpnII	GATC	2 cut(s)	53, 97
Eco32I	GATATC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	131
Eco88I	CYCGRG	2 cut(s)	57, 163
EcoRV	GATATC	1 cut(s)	150
FaeI	CATG	2 cut(s)	23, 118
FaiI	YATR	3 cut(s)	21, 92, 116
FatI	CATG	2 cut(s)	19, 114
Hin1II	CATG	2 cut(s)	23, 118
HinfI	GANTC	3 cut(s)	5, 70, 166
HphI	GGTGA	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	48, 171
Hpy188III	TCNNGA	3 cut(s)	31, 57, 115
HpyF3I	CTNAG	3 cut(s)	10, 72, 237
Hsp92II	CATG	2 cut(s)	23, 118
Kzo9I	GATC	2 cut(s)	53, 97
LpnPI	CCDG	5 cut(s)	36, 50, 59, 147, 227
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	2 cut(s)	55, 99
MboI	GATC	2 cut(s)	53, 97
MflI	RGATCY	1 cut(s)	53
MluCI	AATT	1 cut(s)	232
MlyI	GAGTC	2 cut(s)	64, 175
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	7 cut(s)	19, 53, 111, 132, 136, 179, 196
MseI	TTAA	2 cut(s)	78, 230
NdeII	GATC	2 cut(s)	53, 97
NlaIII	CATG	2 cut(s)	23, 118
NlaIV	GGNNCC	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	67
NspI	RCATGY	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	23
PaeR7I	CTCGAG	1 cut(s)	163
PagI	TCATGA	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	5
PleI	GAGTC	2 cut(s)	64, 174
PpsI	GAGTC	2 cut(s)	64, 174
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	131
PspXI	VCTCGAGB	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	78, 230
Sau3AI	GATC	2 cut(s)	53, 97
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	2 cut(s)	64, 175
SetI	ASST	4 cut(s)	69, 78, 160, 190
Sfr274I	CTCGAG	1 cut(s)	163
SinI	GGWCC	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	1 cut(s)	232
TaqI	TCGA	1 cut(s)	164
TasI	AATT	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	78, 230
Tru9I	TTAA	2 cut(s)	78, 230
TscAI	CASTG	2 cut(s)	18, 141
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspRI	CASTG	2 cut(s)	18, 141
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	232
XceI	RCATGY	1 cut(s)	23
XhoI	CTCGAG	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.