Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007604

Physical Location & Seq

Genomic Coordinates Reverse (-)

37799808 .. 37806022

Gene Structure 6215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G447100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2523 bp

ATGATGGCGGTGACGTCAGCCTGCAAAGATGGTGGGATGAAGATGCAAATGGACAATGGCAAGTACGTAAGGTACACACCAGAGCAAGTTGAAGCTTTAGAGAGGTTGTACCATGAGTGCCCAAAGCCCAGTTCTATGCGTCGCCAGCAGCTCATTCGCGAGTGCCCTATTCTCTCCAACATCGAGCCTAAGCAGATCAAAGTCTGGTTCCAGAACCGCAGATGCAGAGAGAAACAGAGGAAAGAGGCGTCTAGATTGCAAACTGTGAATAGGAAGCTGACCGCAATGAACAAGCTTTTGATGGAGGAGAATGATAGGCTGCAAAAGCAGGTGTCTCAGCTCGTCTATGAGAACAGCTATTTCCGCCAGCAGACACAGAATACGAACCTTGCCACCACAGACACAAGTTGTGAGTCGGTGGTGACTAGTGGTCAACACCATTTGACCCCTCAGCATCCACCAAGGGATGCCAGCCCTGCAGGACTTTTGTCCATTGCAGAGGAAACTTTAGCAGAGTTTTTATCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTTGCACTGGTGTGGCGGCACGTGCATGCGGCCTTGTGGGTTTAGAGCCTACAAGAGTCGCTGAAATCCTTAAAGATCGGCCTTCGTGGTTTCGAAATTGCCGATCTGTGGATGTGCTAAATGTGTTGTCCACTGGCAATGGTGGAACCATTGAACTGCTTTACATGCAGCTCTATGCACCCACAACTTTGGCACCAGCTCGAGACTTCTGGTTGCTGCGCTACACGTCTGTTTTGGAAGATGGTAGCCTTGTGGTTTGTGAAAGGTCACTTAACAACACTCAGAATGGTCCAAGTATGCCACCAGTGCAGAATTTTGTGAGAGCAGAAATGCTGCCAAGTGGGTATCTAATTAGACCTTGTGAAGGTGGTGGGTCAATCATCCACATTGTTGATCATATGGATTTGGAGCCTTGGAGTGTACCTGAAGTGTTGCGCCCACTTTATGAGTCTTCAACACTTCTTGCTCAGAAGACAACGATGGCGGCCTTACGCAACTTGAGGCAGATTTCGCAAGAAGTTTCTCAGCCTAATGCTGCTGGCTGGGGGAGAAGGCCTGCAGCTCTACGTGCTCTTAGTCAGAGATTGAGCAAGGGCTTCAATGAAGCAGTTAATGGGTTTACAGATGAGGGGTGGTCTATTTTAGAAAGTGATGGTGTTGATGATGTTACCCTTCTTGTGAACTCGTCCCCGGGCAAGATGATGGGTGCAAATCTTTATGCCAATGGAGTTCCATCAATGAGCAATGCTGTGTTATGTGCCAAAGCTTCCATGTTACTCCAAAACGTGCCTCCAGCCATTCTTCTTAGATTCTTGCGAGAACACCGATCGGAGTGGGCTGACAGAAGTATTGATGCTTATTCAGCTGCTGCTATTAAACCTGGTCCCTGTGGCCTACTAGGGTCTCGAGCTGGAGGTTTTGGAGATCAAGTTATTCATCCACTGGCTCACACAATTGAGCATGAAGAGTTCATGGAGGTCATTAAGATCGAGAACATGGGCCACTATCGAGAAGACATGATTATGCCTGCAGCAGACATTTTCCTCTTGCAACTATGCAGTGGAGTGGATGAGAATTCGGTCGGGACCTGCGCTGAACTTGTCTTTGCTCCCATTGATGCTTCATTTTCTGATGATGGTCCAATTCTACCTTCCGGTTTTCGGATCATTCCTCTTGATTCTCGGATGGATGCCCCCAGTCCAAACCGTACACTTGATCTTGCCTCTGCTCTTGAAGTTGGACCCGCAGGAAGCAGAGCATCTGGTGATAATGCAGGTCACTCTGGAAACACAAAATCTGTGATGACCATAGCATTCCAATTTGCATTTGAAATTCACCTTCAAGACAATGTAGCTTCCATGGCTCGCCAGTATGTCCGCAGTATTATTGCATCAGTACAGAGGGTAGCACTGGCTCTCTCCCCTTCTCGTTTTGGTTCTAATTCTGGTTTCCGGCCACCACCTGGCACTCCTGAAGCACAAACTCTCGCTGGTTGGATCTGTCAGAGCTATAGGTGCTATCTAGGAGGAGACTTACTAAAAAGTGAAGGAAGTGAGTCCATTCTCAAATCTCTTTGGCATCACTCGGATGCTATCTTATGCTGCTCTTTGAAGGCATTGCCAGTTTTCACATTCGCAAACCAGGCAGGCCTTGACATGCTCGAGACGACGTTAGTTGCACTTCAGGATATTACACTGGAAAAGATTTTTGATGACAATGGAAGGAAGACCCTATTCTCTGAGTTCCCACAGATAATGCAGCAGGGTTTTATGTGTCTTCAAGGTGGCATATGCATGTCAAGCATGGGAAGGCCAATCTCCTATGAGAGGGCAGTGGCATGGAAGGTGTTGAATGAAGAAGAAACTGCTCACTGCATCTGCTTCATGTTCATCAACTGGTCATTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010033 GO:0010065 GO:0010067 GO:0010072 GO:0010087 GO:0010089 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

841

Amino Acids

92.41

Weight (kDa)

5.93

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32880
fragaria_vesca	FvH4_2g35360 FvH4_2g35360 FvH4_2g35360 FvH4_2g35360
malus_domestica	MD08G1112900.v1.1 MD15G1092200.v1.1
prunus_persica	Prupe.1G447100_v2.0.a1 Prupe.1G447100_v2.0.a1
pyrus_communis	pycom08g09360 pycom110g00010 pycom15g08570
rosa_chinensis	RchiOBHm_Chr6g0306551
rosa_laevigata	RLG00000010786
rosa_multiflora	Rmu_sc0002971.1_g000003 Rmu_sc0002971.1_g000004
rosa_roxburghii	Rroxscaffold_7G00161680
rosa_rugosa	Rorug06G0350500 Rorug06G0350500
rosa_samantha	Rh6AG462700 Rh6BG438100 Rh6CG476800 Rh6DG463500
rosa_wichuraiana	Rw6G040320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	319
AatII	GACGTC	1 cut(s)	17
Acc36I	ACCTGC	3 cut(s)	319, 1709, 1877
AccB1I	GGYRCC	1 cut(s)	805
AccB7I	CCANNNNNTGG	1 cut(s)	2075
AccII	CGCG	1 cut(s)	159
AccIII	TCCGGA	1 cut(s)	580
AciI	CCGC	9 cut(s)	8, 217, 282, 364, 629, 642, 1097, 1857, 1990
AclWI	GGATC	2 cut(s)	1784, 2117
AcoI	YGGCCR	1 cut(s)	2066
AcsI	RAATTY	3 cut(s)	925, 1687, 1944
AcuI	CTGAAG	3 cut(s)	1059, 2106, 2279
AcvI	CACGTG	1 cut(s)	635
AcyI	GRCGYC	2 cut(s)	14, 248
AfaI	GTAC	6 cut(s)	65, 74, 110, 1035, 1822, 2010
AfiI	CCNNNNNNNGG	5 cut(s)	721, 977, 1773, 2075, 2439
AflIII	ACRYGT	1 cut(s)	837
AhdI	GACNNNNNGTC	1 cut(s)	429
AhlI	ACTAGT	1 cut(s)	425
AjiI	CACGTC	1 cut(s)	840
AjnI	CCWGG	5 cut(s)	562, 574, 1492, 2074, 2253
AjuI	GAANNNNNNNTTGG	4 cut(s)	115, 147, 1747, 1779
AleI	CACNNNNGTG	1 cut(s)	623
Alw21I	GWGCWC	1 cut(s)	1186
Alw26I	GTCTC	5 cut(s)	339, 810, 1521, 2136, 2270
AlwI	GGATC	2 cut(s)	1784, 2117
AlwNI	CAGNNNCTG	1 cut(s)	1481
Ama87I	CYCGRG	4 cut(s)	813, 1303, 1518, 2273
Aor13HI	TCCGGA	1 cut(s)	580
AoxI	GGCC	9 cut(s)	643, 692, 1098, 1166, 1504, 1612, 2066, 2260, 2423
ApoI	RAATTY	3 cut(s)	925, 1687, 1944
AspLEI	GCGC	3 cut(s)	834, 1050, 1706
AspS9I	GGNCC	8 cut(s)	553, 578, 902, 1496, 1612, 1698, 1751, 1853
AsuC2I	CCSGG	2 cut(s)	1304, 1305
AsuHPI	GGTGA	4 cut(s)	22, 433, 1889, 1940
AsuII	TTCGAA	1 cut(s)	706
AvaI	CYCGRG	4 cut(s)	813, 1303, 1518, 2273
AvaII	GGWCC	7 cut(s)	553, 578, 902, 1496, 1698, 1751, 1853
BaeGI	GKGCMC	2 cut(s)	122, 167
BanI	GGYRCC	1 cut(s)	805
BbrPI	CACGTG	1 cut(s)	635
BbsI	GAAGAC	5 cut(s)	1056, 1091, 1632, 2345, 2381
Bbv12I	GWGCWC	1 cut(s)	1186
BbvCI	CCTCAGC	1 cut(s)	450
BccI	CCATC	9 cut(s)	23, 295, 848, 1087, 1259, 1309, 1354, 1742, 1792
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	5 cut(s)	564, 576, 1494, 2076, 2255
BclI	TGATCA	1 cut(s)	1006
BcnI	CCSGG	2 cut(s)	1304, 1305
BcoDI	GTCTC	5 cut(s)	339, 810, 1521, 2136, 2270
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	4 cut(s)	252, 426, 1511, 2135
BfmI	CTRYAG	4 cut(s)	477, 1170, 1641, 2122
BfuAI	ACCTGC	3 cut(s)	319, 1709, 1877
Bme1390I	CCNGG	7 cut(s)	564, 576, 1304, 1305, 1494, 2076, 2255
Bme18I	GGWCC	7 cut(s)	553, 578, 902, 1496, 1698, 1751, 1853
BmeRI	GACNNNNNGTC	1 cut(s)	429
BmeT110I	CYCGRG	4 cut(s)	813, 1303, 1518, 2273
BmgBI	CACGTC	1 cut(s)	840
BmgT120I	GGNCC	8 cut(s)	553, 578, 902, 1496, 1612, 1698, 1751, 1853
BmiI	GGNNCC	8 cut(s)	209, 554, 760, 807, 1023, 1498, 1699, 1855
BmrFI	CCNGG	7 cut(s)	564, 576, 1304, 1305, 1494, 2076, 2255
BmrI	ACTGGG	2 cut(s)	123, 1803
BmuI	ACTGGG	2 cut(s)	123, 1803
BoxI	GACNNNNGTC	1 cut(s)	487
BpiI	GAAGAC	5 cut(s)	1056, 1091, 1632, 2345, 2381
BpmI	CTGGAG	2 cut(s)	1389, 1545
Bpu10I	CCTNAGC	2 cut(s)	189, 450
Bpu14I	TTCGAA	1 cut(s)	706
BpuEI	CTTGAG	1 cut(s)	1132
BpuMI	CCSGG	2 cut(s)	1304, 1305
BsaAI	YACGTR	3 cut(s)	67, 635, 1181
BsaHI	GRCGYC	2 cut(s)	14, 248
BsaI	GGTCTC	1 cut(s)	1521
BsaJI	CCNNGG	6 cut(s)	461, 563, 1025, 1302, 1303, 1971
BsaWI	WCCGGW	2 cut(s)	580, 1766
BsaXI	ACNNNNNCTCC	2 cut(s)	1527, 1557
Bsc4I	CCNNNNNNNGG	5 cut(s)	721, 977, 1773, 2075, 2439
Bse3DI	GCAATG	5 cut(s)	291, 492, 757, 1363, 2228
BseAI	TCCGGA	1 cut(s)	580
BseBI	CCWGG	5 cut(s)	564, 576, 1494, 2076, 2255
BseDI	CCNNGG	6 cut(s)	461, 563, 1025, 1302, 1303, 1971
BseLI	CCNNNNNNNGG	5 cut(s)	721, 977, 1773, 2075, 2439
BseMI	GCAATG	5 cut(s)	291, 492, 757, 1363, 2228
BseMII	CTCAG	6 cut(s)	350, 464, 908, 1094, 1151, 2343
BseRI	GAGGAG	2 cut(s)	320, 2154
BseSI	GKGCMC	2 cut(s)	122, 167
BseYI	CCCAGC	1 cut(s)	1155
BsgI	GTGCAG	1 cut(s)	941
Bsh1236I	CGCG	1 cut(s)	159
Bsh1285I	CGRYCG	2 cut(s)	1442, 1695
BshFI	GGCC	9 cut(s)	645, 694, 1100, 1168, 1506, 1614, 2068, 2262, 2425
BshNI	GGYRCC	1 cut(s)	805
BsiEI	CGRYCG	2 cut(s)	1442, 1695
BsiHKAI	GWGCWC	1 cut(s)	1186
BsiHKCI	CYCGRG	4 cut(s)	813, 1303, 1518, 2273
BsiSI	CCGG	4 cut(s)	581, 1304, 1767, 2065
BslFI	GGGAC	3 cut(s)	1285, 1482, 1711
BslI	CCNNNNNNNGG	5 cut(s)	721, 977, 1773, 2075, 2439
BsmAI	GTCTC	5 cut(s)	339, 810, 1521, 2136, 2270
BsmBI	CGTCTC	1 cut(s)	2270
BsmFI	GGGAC	3 cut(s)	1285, 1482, 1711
BsmI	GAATGC	1 cut(s)	1925
BsnI	GGCC	9 cut(s)	645, 694, 1100, 1168, 1506, 1614, 2068, 2262, 2425
Bso31I	GGTCTC	1 cut(s)	1521
BsoBI	CYCGRG	4 cut(s)	813, 1303, 1518, 2273
Bsp119I	TTCGAA	1 cut(s)	706
Bsp1286I	GDGCHC	3 cut(s)	122, 167, 1186
Bsp13I	TCCGGA	1 cut(s)	580
Bsp19I	CCATGG	1 cut(s)	1971
Bsp68I	TCGCGA	1 cut(s)	159
BspACI	CCGC	9 cut(s)	8, 217, 282, 364, 629, 642, 1097, 1857, 1990
BspANI	GGCC	9 cut(s)	645, 694, 1100, 1168, 1506, 1614, 2068, 2262, 2425
BspCNI	CTCAG	6 cut(s)	349, 463, 907, 1093, 1150, 2344
BspEI	TCCGGA	1 cut(s)	580
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	8 cut(s)	209, 554, 760, 807, 1023, 1498, 1699, 1855
BspMAI	CTGCAG	3 cut(s)	481, 1174, 1645
BspMI	ACCTGC	3 cut(s)	319, 1709, 1877
BspPI	GGATC	2 cut(s)	1784, 2117
BspT104I	TTCGAA	1 cut(s)	706
BspT107I	GGYRCC	1 cut(s)	805
BspTNI	GGTCTC	1 cut(s)	1521
BsrDI	GCAATG	5 cut(s)	291, 492, 757, 1363, 2228
BssECI	CCNNGG	6 cut(s)	461, 563, 1025, 1302, 1303, 1971
BssNI	GRCGYC	2 cut(s)	14, 248
BssT1I	CCWWGG	3 cut(s)	461, 1025, 1971
Bst2UI	CCWGG	5 cut(s)	564, 576, 1494, 2076, 2255
Bst4CI	ACNGT	3 cut(s)	265, 614, 1820
Bst6I	CTCTTC	1 cut(s)	1572
BstACI	GRCGYC	2 cut(s)	14, 248
BstBAI	YACGTR	3 cut(s)	67, 635, 1181
BstBI	TTCGAA	1 cut(s)	706
BstDEI	CTNAG	9 cut(s)	189, 336, 450, 894, 1080, 1137, 1187, 1418, 2352
BstDSI	CCRYGG	1 cut(s)	1971
BstENI	CCTNNNNNAGG	2 cut(s)	975, 2437
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	3 cut(s)	834, 1050, 1706
BstMAI	GTCTC	5 cut(s)	339, 810, 1521, 2136, 2270
BstMCI	CGRYCG	2 cut(s)	1442, 1695
BstNI	CCWGG	5 cut(s)	564, 576, 1494, 2076, 2255
BstNSI	RCATGY	4 cut(s)	642, 781, 2272, 2410
BstPAI	GACNNNNGTC	1 cut(s)	487
BstSCI	CCNGG	7 cut(s)	562, 574, 1302, 1303, 1492, 2074, 2253
BstSFI	CTRYAG	4 cut(s)	477, 1170, 1641, 2122
BstSLI	GKGCMC	2 cut(s)	122, 167
BstSNI	TACGTA	1 cut(s)	67
BstUI	CGCG	1 cut(s)	159
BstV2I	GAAGAC	5 cut(s)	1056, 1091, 1632, 2345, 2381
BstX2I	RGATCY	1 cut(s)	2109
BstXI	CCANNNNNNTGG	2 cut(s)	563, 802
BstYI	RGATCY	1 cut(s)	2109
BsuRI	GGCC	9 cut(s)	645, 694, 1100, 1168, 1506, 1614, 2068, 2262, 2425
BtgI	CCRYGG	1 cut(s)	1971
BtrI	CACGTC	1 cut(s)	840
BtsI	GCAGTG	3 cut(s)	1678, 2451, 2482
BtsIMutI	CAGTG	9 cut(s)	618, 744, 924, 1553, 1678, 2021, 2306, 2451, 2482
BtuMI	TCGCGA	1 cut(s)	159
BveI	ACCTGC	3 cut(s)	319, 1709, 1877
CaiI	CAGNNNCTG	1 cut(s)	1481
CfoI	GCGC	3 cut(s)	834, 1050, 1706
Cfr13I	GGNCC	8 cut(s)	553, 578, 902, 1496, 1612, 1698, 1751, 1853
Cfr9I	CCCGGG	1 cut(s)	1303
CseI	GACGC	2 cut(s)	128, 237
CsiI	ACCWGGT	1 cut(s)	1492
Csp6I	GTAC	6 cut(s)	64, 73, 109, 1034, 1821, 2009
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviQI	GTAC	6 cut(s)	64, 73, 109, 1034, 1821, 2009
DdeI	CTNAG	9 cut(s)	189, 336, 450, 894, 1080, 1137, 1187, 1418, 2352
DriI	GACNNNNNGTC	1 cut(s)	429
EaeI	YGGCCR	1 cut(s)	2066
Eam1104I	CTCTTC	1 cut(s)	1572
Eam1105I	GACNNNNNGTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	1572
EciI	GGCGGA	1 cut(s)	353
Eco105I	TACGTA	1 cut(s)	67
Eco130I	CCWWGG	3 cut(s)	461, 1025, 1971
Eco147I	AGGCCT	2 cut(s)	1168, 2262
Eco31I	GGTCTC	1 cut(s)	1521
Eco47I	GGWCC	7 cut(s)	553, 578, 902, 1496, 1698, 1751, 1853
Eco57I	CTGAAG	3 cut(s)	1059, 2106, 2279
Eco72I	CACGTG	1 cut(s)	635
Eco88I	CYCGRG	4 cut(s)	813, 1303, 1518, 2273
EcoNI	CCTNNNNNAGG	2 cut(s)	975, 2437
EcoO109I	RGGNCCY	1 cut(s)	1698
EcoRI	GAATTC	1 cut(s)	1687
EcoRII	CCWGG	5 cut(s)	562, 574, 1492, 2074, 2253
EcoT14I	CCWWGG	3 cut(s)	461, 1025, 1971
EcoT22I	ATGCAT	1 cut(s)	2408
ErhI	CCWWGG	3 cut(s)	461, 1025, 1971
Esp3I	CGTCTC	1 cut(s)	2270
FaqI	GGGAC	3 cut(s)	1285, 1482, 1711
FauI	CCCGC	1 cut(s)	1864
FauNDI	CATATG	2 cut(s)	1011, 2402
FbaI	TGATCA	1 cut(s)	1006
FspBI	CTAG	4 cut(s)	252, 426, 1511, 2135
GlaI	GCGC	3 cut(s)	833, 1049, 1705
GsaI	CCCAGC	1 cut(s)	1159
GsuI	CTGGAG	2 cut(s)	1389, 1545
HaeIII	GGCC	9 cut(s)	645, 694, 1100, 1168, 1506, 1614, 2068, 2262, 2425
HapII	CCGG	4 cut(s)	581, 1304, 1767, 2065
HgaI	GACGC	2 cut(s)	128, 237
HhaI	GCGC	3 cut(s)	834, 1050, 1706
Hin1I	GRCGYC	2 cut(s)	14, 248
Hin6I	GCGC	3 cut(s)	832, 1048, 1704
HinP1I	GCGC	3 cut(s)	832, 1048, 1704
HincII	GTYRAC	1 cut(s)	434
HindII	GTYRAC	1 cut(s)	434
HindIII	AAGCTT	3 cut(s)	93, 293, 1377
HinfI	GANTC	8 cut(s)	413, 584, 594, 669, 1061, 1422, 1790, 2168
HpaII	CCGG	4 cut(s)	581, 1304, 1767, 2065
HphI	GGTGA	4 cut(s)	22, 433, 1889, 1940
Hpy166II	GTNNAC	7 cut(s)	75, 434, 744, 1034, 1233, 1294, 1823
Hpy8I	GTNNAC	7 cut(s)	75, 434, 744, 1034, 1233, 1294, 1823
Hpy99I	CGWCG	2 cut(s)	144, 2284
HpyCH4III	ACNGT	3 cut(s)	265, 614, 1820
HpyCH4IV	ACGT	7 cut(s)	14, 66, 634, 839, 1180, 1398, 2282
HpyF3I	CTNAG	9 cut(s)	189, 336, 450, 894, 1080, 1137, 1187, 1418, 2352
HpySE526I	ACGT	7 cut(s)	14, 66, 634, 839, 1180, 1398, 2282
Hsp92I	GRCGYC	2 cut(s)	14, 248
HspAI	GCGC	3 cut(s)	832, 1048, 1704
Kpn2I	TCCGGA	1 cut(s)	580
Ksp22I	TGATCA	1 cut(s)	1006
LmnI	GCTCC	2 cut(s)	1021, 1726
MabI	ACCWGGT	1 cut(s)	1492
MaeI	CTAG	4 cut(s)	252, 426, 1511, 2135
MaeII	ACGT	7 cut(s)	14, 66, 634, 839, 1180, 1398, 2282
MaeIII	GTNAC	6 cut(s)	10, 421, 879, 1279, 1386, 1889
MfeI	CAATTG	1 cut(s)	1566
MflI	RGATCY	1 cut(s)	2109
MhlI	GDGCHC	3 cut(s)	122, 167, 1186
MluCI	AATT	9 cut(s)	709, 925, 963, 1566, 1687, 1755, 1931, 1944, 2053
MlyI	GAGTC	4 cut(s)	422, 678, 1070, 2177
MmeI	TCCRAC	3 cut(s)	201, 1831, 2087
Mph1103I	ATGCAT	1 cut(s)	2408
MroI	TCCGGA	1 cut(s)	580
MseI	TTAA	5 cut(s)	684, 885, 1224, 1488, 1596
MslI	CAYNNNNRTG	5 cut(s)	623, 637, 1634, 2199, 2405
MspA1I	CMGCKG	1 cut(s)	1478
MspI	CCGG	4 cut(s)	581, 1304, 1767, 2065
MspR9I	CCNGG	7 cut(s)	564, 576, 1304, 1305, 1494, 2076, 2255
MunI	CAATTG	1 cut(s)	1566
Mva1269I	GAATGC	1 cut(s)	1925
MvaI	CCWGG	5 cut(s)	564, 576, 1494, 2076, 2255
MvnI	CGCG	1 cut(s)	159
NciI	CCSGG	2 cut(s)	1304, 1305
NcoI	CCATGG	1 cut(s)	1971
NdeI	CATATG	2 cut(s)	1011, 2402
NlaIV	GGNNCC	8 cut(s)	209, 554, 760, 807, 1023, 1498, 1699, 1855
NmuCI	GTSAC	4 cut(s)	10, 421, 879, 1889
NruI	TCGCGA	1 cut(s)	159
NsiI	ATGCAT	1 cut(s)	2408
NspI	RCATGY	4 cut(s)	642, 781, 2272, 2410
NspV	TTCGAA	1 cut(s)	706
OliI	CACNNNNGTG	1 cut(s)	623
PaeI	GCATGC	1 cut(s)	642
PaeR7I	CTCGAG	3 cut(s)	813, 1518, 2273
PaqCI	CACCTGC	1 cut(s)	319
PceI	AGGCCT	2 cut(s)	1168, 2262
PcsI	WCGNNNNNNNCGW	1 cut(s)	712
PctI	GAATGC	1 cut(s)	1925
PfeI	GAWTC	4 cut(s)	584, 594, 1422, 1790
PflMI	CCANNNNNTGG	1 cut(s)	2075
Ple19I	CGATCG	1 cut(s)	1442
PleI	GAGTC	4 cut(s)	421, 677, 1069, 2176
PmaCI	CACGTG	1 cut(s)	635
PmlI	CACGTG	1 cut(s)	635
PpsI	GAGTC	4 cut(s)	421, 677, 1069, 2176
Ppu21I	YACGTR	3 cut(s)	67, 635, 1181
PpuMI	RGGWCCY	1 cut(s)	1698
PshAI	GACNNNNGTC	1 cut(s)	487
Psp5II	RGGWCCY	1 cut(s)	1698
Psp6I	CCWGG	5 cut(s)	562, 574, 1492, 2074, 2253
PspCI	CACGTG	1 cut(s)	635
PspFI	CCCAGC	1 cut(s)	1155
PspGI	CCWGG	5 cut(s)	562, 574, 1492, 2074, 2253
PspN4I	GGNNCC	8 cut(s)	209, 554, 760, 807, 1023, 1498, 1699, 1855
PspPI	GGNCC	8 cut(s)	553, 578, 902, 1496, 1612, 1698, 1751, 1853
PspPPI	RGGWCCY	1 cut(s)	1698
PstI	CTGCAG	3 cut(s)	481, 1174, 1645
PstNI	CAGNNNCTG	1 cut(s)	1481
PsuI	RGATCY	1 cut(s)	2109
PvuI	CGATCG	1 cut(s)	1442
PvuII	CAGCTG	1 cut(s)	1478
RruI	TCGCGA	1 cut(s)	159
RsaI	GTAC	6 cut(s)	65, 74, 110, 1035, 1822, 2010
RsaNI	GTAC	6 cut(s)	64, 73, 109, 1034, 1821, 2009
RseI	CAYNNNNRTG	5 cut(s)	623, 637, 1634, 2199, 2405
SaqAI	TTAA	5 cut(s)	684, 885, 1224, 1488, 1596
Sau96I	GGNCC	8 cut(s)	553, 578, 902, 1496, 1612, 1698, 1751, 1853
SbfI	CCTGCAGG	1 cut(s)	481
SchI	GAGTC	4 cut(s)	422, 678, 1070, 2177
ScrFI	CCNGG	7 cut(s)	564, 576, 1304, 1305, 1494, 2076, 2255
SdaI	CCTGCAGG	1 cut(s)	481
SduI	GDGCHC	3 cut(s)	122, 167, 1186
SexAI	ACCWGGT	1 cut(s)	1492
SfcI	CTRYAG	4 cut(s)	477, 1170, 1641, 2122
Sfr274I	CTCGAG	3 cut(s)	813, 1518, 2273
SfuI	TTCGAA	1 cut(s)	706
SinI	GGWCC	7 cut(s)	553, 578, 902, 1496, 1698, 1751, 1853
SlaI	CTCGAG	3 cut(s)	813, 1518, 2273
SmaI	CCCGGG	1 cut(s)	1305
SmiMI	CAYNNNNRTG	5 cut(s)	623, 637, 1634, 2199, 2405
SmlI	CTYRAG	4 cut(s)	813, 1111, 1518, 2273
SmoI	CTYRAG	4 cut(s)	813, 1111, 1518, 2273
SnaBI	TACGTA	1 cut(s)	67
SpeI	ACTAGT	1 cut(s)	425
SphI	GCATGC	1 cut(s)	642
Sse8387I	CCTGCAGG	1 cut(s)	481
Sse9I	AATT	9 cut(s)	709, 925, 963, 1566, 1687, 1755, 1931, 1944, 2053
SseBI	AGGCCT	2 cut(s)	1168, 2262
SsiI	CCGC	9 cut(s)	8, 217, 282, 364, 629, 642, 1097, 1857, 1990
SspMI	CTAG	4 cut(s)	252, 426, 1511, 2135
StuI	AGGCCT	2 cut(s)	1168, 2262
StyD4I	CCNGG	7 cut(s)	562, 574, 1302, 1303, 1492, 2074, 2253
StyI	CCWWGG	3 cut(s)	461, 1025, 1971
TaaI	ACNGT	3 cut(s)	265, 614, 1820
TaiI	ACGT	7 cut(s)	17, 69, 637, 842, 1183, 1401, 2285
TaqI	TCGA	7 cut(s)	183, 706, 814, 1519, 1602, 1621, 2274
TaqII	GACCGA	1 cut(s)	1681
TasI	AATT	9 cut(s)	709, 925, 963, 1566, 1687, 1755, 1931, 1944, 2053
TatI	WGTACW	1 cut(s)	2008
TauI	GCSGC	3 cut(s)	632, 645, 1100
TfiI	GAWTC	4 cut(s)	584, 594, 1422, 1790
Tru1I	TTAA	5 cut(s)	684, 885, 1224, 1488, 1596
Tru9I	TTAA	5 cut(s)	684, 885, 1224, 1488, 1596
TscAI	CASTG	9 cut(s)	625, 751, 924, 1560, 1678, 2028, 2313, 2451, 2489
TseFI	GTSAC	4 cut(s)	10, 421, 879, 1889
Tsp45I	GTSAC	4 cut(s)	10, 421, 879, 1889
TspMI	CCCGGG	1 cut(s)	1303
TspRI	CASTG	9 cut(s)	625, 751, 924, 1560, 1678, 2028, 2313, 2451, 2489
Van91I	CCANNNNNTGG	1 cut(s)	2075
VpaK11BI	GGWCC	7 cut(s)	553, 578, 902, 1496, 1698, 1751, 1853
XagI	CCTNNNNNAGG	2 cut(s)	975, 2437
XapI	RAATTY	3 cut(s)	925, 1687, 1944
XbaI	TCTAGA	1 cut(s)	251
XceI	RCATGY	4 cut(s)	642, 781, 2272, 2410
XhoI	CTCGAG	3 cut(s)	813, 1518, 2273
XmaI	CCCGGG	1 cut(s)	1303
XspI	CTAG	4 cut(s)	252, 426, 1511, 2135
ZraI	GACGTC	1 cut(s)	15
Zsp2I	ATGCAT	1 cut(s)	2408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.