Rorug06G0350500

Protein SAWADEE HOMEODOMAIN HOMOLOG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000905
Physical Location & Seq
Forward (+)
49978397 .. 49980626
2230 bp
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UTR
Exon/CDS
Intron
Rorug06G0350500.1

Sequence Viewer

Length: 447 bp
ATGCTTCCGCTTTCACTGCTCAAGACTGCCCAAGGGCACCCCATGTTGGTGGAGCTTAAGAATGGGGAGACTTACAATGGCCATTTGGTGAACTGCGATACTTGGATGAACATCCATCTTCGAGAAGTCATCTGCACTTCCAAAGATGGAGACAGGTTTTGGAGGATGCCCGAGTGCTACATCCGTGGGAATACTATTAAGTATCTGCGAGTTCCTGATGAGGTGATCGACAAGGTTCAGGAAGAAACCAAGAGAACAGATAGGAAACCACCGGGAGTAGGGCGTGGAAGAGGAAGAGGAGGTAGGGAGGACGCTCCTGGTGGACGACAACCAAAAGGCATTGGACGTGGCATGGAGGATGGGGCTAAGGGTGCTAGTGGAGGTCGAGGCAGAGGTGGACCAGGTGGAAAGGCTGGTGGAAGAGGTGGAGGACGAGGCCGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

148

Amino Acids

15.96

Weight (kDa)

10.07

Isoelectric Point (pI)

30.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 6 - 70 9.4e-18 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 36
AciI CCGC 1 cut(s) 8
AcoI YGGCCR 1 cut(s) 79
AfiI CCNNNNNNNGG 2 cut(s) 46, 278
AflII CTTAAG 1 cut(s) 56
AjiI CACGTC 1 cut(s) 347
AjnI CCWGG 2 cut(s) 316, 400
AluBI AGCT 2 cut(s) 55, 443
AluI AGCT 2 cut(s) 55, 443
Alw26I GTCTC 2 cut(s) 62, 144
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 2 cut(s) 79, 436
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 1 cut(s) 273
AsuHPI GGTGA 2 cut(s) 100, 235
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 1 cut(s) 398
BaeGI GKGCMC 1 cut(s) 39
BalI TGGCCA 1 cut(s) 81
BanI GGYRCC 1 cut(s) 36
BccI CCATC 3 cut(s) 123, 140, 353
BciT130I CCWGG 2 cut(s) 318, 402
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 2 cut(s) 62, 144
BfaI CTAG 1 cut(s) 375
BfrI CTTAAG 1 cut(s) 56
Bme1390I CCNGG 3 cut(s) 273, 318, 402
Bme18I GGWCC 1 cut(s) 398
BmeT110I CYCGRG 1 cut(s) 170
BmgBI CACGTC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 3 cut(s) 273, 318, 402
BmsI GCATC 1 cut(s) 156
Bpu10I CCTNAGC 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 5
BpuMI CCSGG 1 cut(s) 273
BsaBI GATNNNNATC 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 31, 184
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 278
Bse8I GATNNNNATC 1 cut(s) 110
BseBI CCWGG 2 cut(s) 318, 402
BseDI CCNNGG 2 cut(s) 31, 184
BseGI GGATG 5 cut(s) 111, 111, 171, 180, 364
BseJI GATNNNNATC 1 cut(s) 110
BseLI CCNNNNNNNGG 2 cut(s) 46, 278
BseRI GAGGAG 1 cut(s) 312
BseSI GKGCMC 1 cut(s) 39
BsgI GTGCAG 1 cut(s) 118
BshFI GGCC 2 cut(s) 81, 438
BshNI GGYRCC 1 cut(s) 36
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 46, 278
BsmAI GTCTC 2 cut(s) 62, 144
BsnI GGCC 2 cut(s) 81, 438
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 1 cut(s) 8
BspANI GGCC 2 cut(s) 81, 438
BspLI GGNNCC 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 36
BspTI CTTAAG 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 31, 184
BssMI GATC 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 2 cut(s) 318, 402
Bst6I CTCTTC 3 cut(s) 283, 289, 415
BstAFI CTTAAG 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 366
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 5 cut(s) 111, 111, 171, 180, 364
BstKTI GATC 1 cut(s) 228
BstMAI GTCTC 2 cut(s) 62, 144
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 2 cut(s) 16, 371
BstNI CCWGG 2 cut(s) 318, 402
BstSCI CCNGG 3 cut(s) 271, 316, 400
BstSLI GKGCMC 1 cut(s) 39
BstXI CCANNNNNNTGG 1 cut(s) 49
BsuRI GGCC 2 cut(s) 81, 438
BtgI CCRYGG 1 cut(s) 184
BtrI CACGTC 1 cut(s) 347
BtsCI GGATG 5 cut(s) 111, 111, 171, 180, 364
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 398
CseI GACGC 1 cut(s) 320
CsiI ACCWGGT 1 cut(s) 400
CviAII CATG 2 cut(s) 43, 352
CviJI RGCY 6 cut(s) 55, 81, 365, 413, 438, 443
CviKI_1 RGCY 6 cut(s) 55, 81, 365, 413, 438, 443
DdeI CTNAG 1 cut(s) 366
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
EaeI YGGCCR 1 cut(s) 79
Eam1104I CTCTTC 3 cut(s) 283, 289, 415
EarI CTCTTC 3 cut(s) 283, 289, 415
Eco130I CCWWGG 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 398
Eco88I CYCGRG 1 cut(s) 170
EcoRII CCWGG 2 cut(s) 316, 400
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 2 cut(s) 46, 355
FaiI YATR 2 cut(s) 44, 353
FatI CATG 2 cut(s) 42, 351
FokI GGATG 5 cut(s) 98, 118, 167, 178, 371
FspBI CTAG 1 cut(s) 375
HaeIII GGCC 2 cut(s) 81, 438
HapII CCGG 1 cut(s) 272
HgaI GACGC 1 cut(s) 320
Hin1II CATG 2 cut(s) 46, 355
HpaII CCGG 1 cut(s) 272
HphI GGTGA 2 cut(s) 100, 235
Hpy166II GTNNAC 3 cut(s) 91, 323, 398
Hpy188III TCNNGA 4 cut(s) 22, 122, 215, 239
Hpy8I GTNNAC 3 cut(s) 91, 323, 398
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 371
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 1 cut(s) 346
Hsp92II CATG 2 cut(s) 46, 355
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 2 cut(s) 52, 319
LpnPI CCDG 9 cut(s) 139, 224, 228, 285, 303, 330, 387, 399, 414
LweI GCATC 1 cut(s) 156
MabI ACCWGGT 1 cut(s) 400
MaeI CTAG 1 cut(s) 375
MaeII ACGT 1 cut(s) 346
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 5 cut(s) 110, 254, 300, 306, 432
MhlI GDGCHC 1 cut(s) 39
MlsI TGGCCA 1 cut(s) 81
MluNI TGGCCA 1 cut(s) 81
Mox20I TGGCCA 1 cut(s) 81
MscI TGGCCA 1 cut(s) 81
MseI TTAA 2 cut(s) 57, 198
MslI CAYNNNNRTG 1 cut(s) 47
Msp20I TGGCCA 1 cut(s) 81
MspCI CTTAAG 1 cut(s) 56
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 3 cut(s) 273, 318, 402
MvaI CCWGG 2 cut(s) 318, 402
MwoI GCNNNNNNNGC 2 cut(s) 16, 371
NciI CCSGG 1 cut(s) 273
NdeII GATC 1 cut(s) 225
NlaIII CATG 2 cut(s) 46, 355
NlaIV GGNNCC 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 316, 400
PspGI CCWGG 2 cut(s) 316, 400
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 2 cut(s) 57, 198
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 1 cut(s) 398
ScrFI CCNGG 3 cut(s) 273, 318, 402
SduI GDGCHC 1 cut(s) 39
SexAI ACCWGGT 1 cut(s) 400
SfaNI GCATC 1 cut(s) 156
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 20, 56
SmoI CTYRAG 2 cut(s) 20, 56
SsiI CCGC 1 cut(s) 8
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 3 cut(s) 271, 316, 400
StyI CCWWGG 1 cut(s) 31
TaiI ACGT 1 cut(s) 349
TaqI TCGA 3 cut(s) 121, 228, 385
Tru1I TTAA 2 cut(s) 57, 198
Tru9I TTAA 2 cut(s) 57, 198
TscAI CASTG 1 cut(s) 21
TspDTI ATGAA 1 cut(s) 122
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 21
Vha464I CTTAAG 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 398
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.