RchiOBHm_Chr4g0409031

Protein SAWADEE HOMEODOMAIN HOMOLOG

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
32096977 .. 32099692
2716 bp
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UTR
Exon/CDS
Intron
PRQ38010

Sequence Viewer

Length: 141 bp
ATGGACAAATTGGTGAGGGAGTCAGGAGAAGTCGTGCTTGCCAAAGAATGTTGTCAAAATCTGGCAAAAAGTTTTAATCACTCCGCTGGTCGTGCTGGAAAACCAATTGTGAAATGGATTCAGGTGCAAAATTGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

46

Amino Acids

5.22

Weight (kDa)

9.24

Isoelectric Point (pI)

6.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 25
BfaI CTAG 1 cut(s) 139
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
BspACI CCGC 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 92
Cac8I GCNNGC 1 cut(s) 39
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FspBI CTAG 1 cut(s) 139
HinfI GANTC 2 cut(s) 20, 118
HphI GGTGA 1 cut(s) 25
Hpy188III TCNNGA 1 cut(s) 24
HpyCH4V TGCA 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
LpnPI CCDG 5 cut(s) 9, 47, 72, 81, 107
MaeI CTAG 1 cut(s) 139
MfeI CAATTG 1 cut(s) 105
MluCI AATT 3 cut(s) 8, 105, 130
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 1 cut(s) 9
MseI TTAA 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 86
MunI CAATTG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 118
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 75
SchI GAGTC 1 cut(s) 29
SetI ASST 1 cut(s) 126
SgeI CNNG 8 cut(s) 36, 46, 50, 74, 99, 104, 108, 134
Sse9I AATT 3 cut(s) 8, 105, 130
SsiI CCGC 1 cut(s) 84
SspMI CTAG 1 cut(s) 139
TasI AATT 3 cut(s) 8, 105, 130
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
XcmI CCANNNNNNNNNTGG 1 cut(s) 111
XspI CTAG 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.