Prupe.1G445500_v2.0.a1

Protein SAWADEE HOMEODOMAIN HOMOLOG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000905
Physical Location & Seq
Forward (+)
37719167 .. 37722787
3621 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G445500.1

Sequence Viewer

Length: 756 bp
ATGGAGCGTCTTCGTCCAAGACACAGAGAGGTTCACATTGGCTTTACAAAGGCCGAGACTCAGAAAATGGAGAGATTGCTAAGGGAATTAGGAGAACAAGTGCTGGAGCGACAATTTTGTCAAAATATTGCAAAATGTTTTAATCGCTCCGCAGGTCGTGCTGGGAAACCGATTGTGAAATGGACTGAGGTGCAAAGTTGGTTGCAGAATAGAGCGCAAGAGTTGCCAAACGTATCCAAAAATATCTCTGAGCAACAGGGAATTCGCCCTTTGAATAAGGCACTTGGAAGTTCTGAAATACCTAAAGAAGAAAAGACCGGAAACATATCAGAGTTGGAATTTGAGGCAAGGTCATCAAAAGATGGGGCATGGTATGATGTTGAGTCGTTCCTTGCTCACAGGTCTCTTAGTTCGGGGGAAACTGAAGTTCGTGTCAGATTTGTTGGATTTGGAGCCGAAGAAGATGAGTGGGTCAATGTAAAAAGAGCAGTGCGAGAACGCTCTGTACCACTGGAGCATTCAGAATGTCAAAATTTGAAGGTTGGAGACCTTGTCCTCTGCTTCCAGGAGAGGAGAGATCAAGCAATCTACTATGATGCTCATATTATTGAAATCCAAAGGAAAATGCACGATATAAGGGGATGCAGGTGTCTTTTCTCAATTCGATATAATCATGACAACATCGAGGCAAGTATTGTTAGTAGTTTTTTTTTTTTTTTTTTTTTTAAATTCTGTCTTCAGGTATGTAACTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

252

Amino Acids

29.34

Weight (kDa)

8.06

Isoelectric Point (pI)

62.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 636
AasI GACNNNNNNGTC 1 cut(s) 117
Acc36I ACCTGC 2 cut(s) 143, 636
AciI CCGC 1 cut(s) 150
AcsI RAATTY 4 cut(s) 261, 338, 532, 728
AcuI CTGAAG 2 cut(s) 444, 722
AfaI GTAC 1 cut(s) 507
AgsI TTSAA 3 cut(s) 274, 538, 611
AjnI CCWGG 1 cut(s) 564
Alw26I GTCTC 3 cut(s) 50, 408, 540
AoxI GGCC 1 cut(s) 51
ApoI RAATTY 4 cut(s) 261, 338, 532, 728
AspLEI GCGC 1 cut(s) 217
BbsI GAAGAC 2 cut(s) 2, 728
BccI CCATC 1 cut(s) 356
BciT130I CCWGG 1 cut(s) 566
BciVI GTATCC 1 cut(s) 244
BcoDI GTCTC 3 cut(s) 50, 408, 540
BfuAI ACCTGC 2 cut(s) 143, 636
BfuI GTATCC 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 566
BmiI GGNNCC 1 cut(s) 454
BmrFI CCNGG 1 cut(s) 566
BmsI GCATC 2 cut(s) 586, 632
BpiI GAAGAC 2 cut(s) 2, 728
BpmI CTGGAG 2 cut(s) 125, 533
Bpu10I CCTNAGC 1 cut(s) 80
BsaI GGTCTC 2 cut(s) 408, 540
BsaWI WCCGGW 1 cut(s) 317
BsaXI ACNNNNNCTCC 4 cut(s) 84, 114, 537, 567
Bse1I ACTGG 1 cut(s) 516
BseBI CCWGG 1 cut(s) 566
BseGI GGATG 1 cut(s) 647
BseMII CTCAG 3 cut(s) 74, 177, 240
BseNI ACTGG 1 cut(s) 516
BseRI GAGGAG 1 cut(s) 586
BseYI CCCAGC 1 cut(s) 161
BshFI GGCC 1 cut(s) 53
BsiSI CCGG 1 cut(s) 318
BsmAI GTCTC 3 cut(s) 50, 408, 540
BsmI GAATGC 1 cut(s) 517
BsnI GGCC 1 cut(s) 53
Bso31I GGTCTC 2 cut(s) 408, 540
Bsp143I GATC 1 cut(s) 577
BspACI CCGC 1 cut(s) 150
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 3 cut(s) 73, 178, 241
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 1 cut(s) 454
BspMI ACCTGC 2 cut(s) 143, 636
BspTNI GGTCTC 2 cut(s) 408, 540
BsrI ACTGG 1 cut(s) 516
BssMI GATC 1 cut(s) 577
Bst2UI CCWGG 1 cut(s) 566
BstAPI GCANNNNNTGC 2 cut(s) 158, 223
BstDEI CTNAG 5 cut(s) 60, 80, 186, 249, 407
BstF5I GGATG 1 cut(s) 647
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 1 cut(s) 580
BstMAI GTCTC 3 cut(s) 50, 408, 540
BstMBI GATC 1 cut(s) 577
BstMWI GCNNNNNNNGC 2 cut(s) 158, 223
BstNI CCWGG 1 cut(s) 566
BstSCI CCNGG 1 cut(s) 564
BstV2I GAAGAC 2 cut(s) 2, 728
BsuI GTATCC 1 cut(s) 244
BsuRI GGCC 1 cut(s) 53
BtsCI GGATG 1 cut(s) 647
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 2 cut(s) 495, 509
BveI ACCTGC 2 cut(s) 143, 636
CciI TCATGA 1 cut(s) 673
CfoI GCGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 506
CviAII CATG 2 cut(s) 369, 674
CviJI RGCY 3 cut(s) 42, 53, 455
CviKI_1 RGCY 3 cut(s) 42, 53, 455
CviQI GTAC 1 cut(s) 506
DdeI CTNAG 5 cut(s) 60, 80, 186, 249, 407
DpnI GATC 1 cut(s) 579
DpnII GATC 1 cut(s) 577
DraI TTTAAA 1 cut(s) 727
DrdI GACNNNNNNGTC 1 cut(s) 117
DseDI GACNNNNNNGTC 1 cut(s) 117
Eco31I GGTCTC 2 cut(s) 408, 540
Eco57I CTGAAG 2 cut(s) 444, 722
EcoRI GAATTC 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 564
FaeI CATG 2 cut(s) 372, 677
FaiI YATR 9 cut(s) 326, 370, 375, 594, 603, 635, 669, 675, 745
FatI CATG 2 cut(s) 368, 673
FokI GGATG 1 cut(s) 654
GlaI GCGC 1 cut(s) 216
GsaI CCCAGC 1 cut(s) 165
GsuI CTGGAG 2 cut(s) 125, 533
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 318
HhaI GCGC 1 cut(s) 217
Hin1II CATG 2 cut(s) 372, 677
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HinfI GANTC 2 cut(s) 58, 383
HpaII CCGG 1 cut(s) 318
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 6 cut(s) 63, 250, 295, 331, 437, 523
Hpy188III TCNNGA 1 cut(s) 674
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 532
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 5 cut(s) 131, 193, 205, 628, 645
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 223
HpyF3I CTNAG 5 cut(s) 60, 80, 186, 249, 407
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 2 cut(s) 372, 677
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 1 cut(s) 577
LmnI GCTCC 5 cut(s) 4, 106, 152, 452, 514
LweI GCATC 2 cut(s) 586, 632
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 746
MalI GATC 1 cut(s) 579
MboI GATC 1 cut(s) 577
MboII GAAGA 4 cut(s) 320, 470, 473, 728
MluCI AATT 7 cut(s) 86, 113, 261, 338, 532, 660, 728
MlyI GAGTC 2 cut(s) 52, 392
MmeI TCCRAC 3 cut(s) 315, 424, 523
MnlI CCTC 6 cut(s) 22, 181, 337, 564, 566, 679
MseI TTAA 2 cut(s) 141, 726
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 1 cut(s) 566
Mva1269I GAATGC 1 cut(s) 517
MvaI CCWGG 1 cut(s) 566
MwoI GCNNNNNNNGC 2 cut(s) 158, 223
NdeII GATC 1 cut(s) 577
NlaIII CATG 2 cut(s) 372, 677
NlaIV GGNNCC 1 cut(s) 454
NmeAIII GCCGAG 1 cut(s) 79
PagI TCATGA 1 cut(s) 673
PaqCI CACCTGC 1 cut(s) 636
PctI GAATGC 1 cut(s) 517
PflFI GACNNNGTC 1 cut(s) 551
PfoI TCCNGGA 1 cut(s) 564
PleI GAGTC 2 cut(s) 52, 391
PpsI GAGTC 2 cut(s) 52, 391
Psp6I CCWGG 1 cut(s) 564
PspFI CCCAGC 1 cut(s) 161
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 1 cut(s) 454
PsrI GAACNNNNNNTAC 2 cut(s) 489, 521
PsyI GACNNNGTC 1 cut(s) 551
RsaI GTAC 1 cut(s) 507
RsaNI GTAC 1 cut(s) 506
SaqAI TTAA 2 cut(s) 141, 726
Sau3AI GATC 1 cut(s) 577
SchI GAGTC 2 cut(s) 52, 392
ScrFI CCNGG 1 cut(s) 566
SfaNI GCATC 2 cut(s) 586, 632
Sse9I AATT 7 cut(s) 86, 113, 261, 338, 532, 660, 728
SsiI CCGC 1 cut(s) 150
SspI AATATT 1 cut(s) 127
StyD4I CCNGG 1 cut(s) 564
TaiI ACGT 1 cut(s) 234
TaqI TCGA 2 cut(s) 664, 684
TasI AATT 7 cut(s) 86, 113, 261, 338, 532, 660, 728
Tru1I TTAA 2 cut(s) 141, 726
Tru9I TTAA 2 cut(s) 141, 726
TscAI CASTG 2 cut(s) 495, 516
TspRI CASTG 2 cut(s) 495, 516
Tth111I GACNNNGTC 1 cut(s) 551
XapI RAATTY 4 cut(s) 261, 338, 532, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.