Rroxscaffold_5G00355740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000905
Physical Location & Seq
Reverse (-)
34715271 .. 34722236
6966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00355740.1

Sequence Viewer

Length: 1245 bp
ATGCTCGGGCACCAAATCGGATCAAACCGCTCACCGCCGCACGCCGTCCGCCTCCACCGCCAAACCCAACACTCGAAATTGCAAGCGAACTTCCACATTGCGGACATAGTCTACTATAGCTCGATCAAGACCATACAAAGCGGCGACTCCTCGATCACCGCCATCAAAGTGGAGGTCCTCGATCTCCGGGTCGGCGAGCAACGAGTTCGGGTTCGGAAATCCTATATTGAAGAGTTGATTCGAATCGGTGATGCAAACGATGGCGTTCCCCCAAAGGCGATGTCGACGACGTTGCGTTCGAAGTACTCCTTCCCCGTGGAGATGCTCATCGGACGATCTCGGCGTGGATGGTGTAGCCGAAATAGGAAGATGATGTTGGGTCGGCTCGCGGCGTCGCCGAACCGACGACGATCCGGCCAAGATAACGACGAGAGAGGGAGGCCGGATTTACACCGCACGGCCATGGGCCAGGAACTTGATGAAGAACAAGCAGCTCCGTCGGTCATCCTCCGATGGCAAGATTTGGGCGAGTTGCTCGAAAACGAGCTGATTATTAAGGCTCCCGAAAAGGCGAGAACGGGCGGTGGAAGATGGCCAAATAATGTTGTACATTCAAGCAGCTTTCGTATGTTGCTAGGTTTGGCAAGAGTTTCGTGTAAGTTTTCTGCTGCTGCTGCTATTGCTTTTGTCGCTTTTTGTGTGATTTGGTTTGTGATTGGATCTTTTGTTGTTGGTGATTTTGAATTGGTGAGATTTACTCTTGAAGAGCCTAAACCTAAAATGAGACTCTTTGAAGGTCCTAGGAAATTCCGGAAATTTCTTTTAAGGACGAAAAATCGAAGATTTTGCCAAACGATCCCTCCGAAAACCTCCGTTCTCTCTCCTCCCTACGTCCTCTACCCGGCCGACCCGACCCGGCTCCATCTTCCACCTCCGGCCACCTCCGGCCACGACCCGACCCTCACCTCCCTCGGACCAGGGCCGCCCGGTCGCCCGGTGCGGTCGCTTTGCCCCGCCGCTGCTCCCGTGCGTGGATCGAAGGAGGCCGCATTTCGTGCAACCCGACCCGCCGGAAAACAACTTTTCCGGCGATGCACGGCCGATCCTCCCCATTTTCGTGATCTCCTCCACTTGCCGATCATCTCCATGCCCTCCTTGCTTGACGATTTTGAGTGTGGAGCGAAAGATCAAGGATTGAAGCTAACGGTTCTGGTTGAATCGACCGCATCGGACGGCCACGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

414

Amino Acids

46.16

Weight (kDa)

10.07

Isoelectric Point (pI)

59.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 9
AccBSI CCGCTC 1 cut(s) 30
AccI GTMKAC 2 cut(s) 111, 284
AccII CGCG 1 cut(s) 389
AccIII TCCGGA 1 cut(s) 810
AclWI GGATC 6 cut(s) 28, 405, 727, 850, 1042, 1097
AcoI YGGCCR 8 cut(s) 415, 459, 593, 903, 936, 946, 1098, 1234
AcsI RAATTY 2 cut(s) 806, 815
AcyI GRCGYC 1 cut(s) 392
AfaI GTAC 2 cut(s) 305, 609
AfiI CCNNNNNNNGG 3 cut(s) 100, 901, 1031
AgsI TTSAA 7 cut(s) 230, 615, 743, 764, 794, 1198, 1217
AjnI CCWGG 2 cut(s) 468, 976
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AluBI AGCT 5 cut(s) 120, 494, 547, 621, 1201
AluI AGCT 5 cut(s) 120, 494, 547, 621, 1201
Alw26I GTCTC 1 cut(s) 778
AlwI GGATC 6 cut(s) 28, 405, 727, 850, 1042, 1097
Ama87I CYCGRG 1 cut(s) 5
Aor13HI TCCGGA 1 cut(s) 810
ApeKI GCWGC 6 cut(s) 491, 618, 668, 671, 674, 1019
ApoI RAATTY 2 cut(s) 806, 815
ArsI GACNNNNNNTTYG 6 cut(s) 159, 191, 266, 280, 298, 312
AspA2I CCTAGG 1 cut(s) 800
AspS9I GGNCC 5 cut(s) 175, 466, 797, 974, 980
AsuC2I CCSGG 5 cut(s) 188, 902, 916, 987, 995
AsuHPI GGTGA 6 cut(s) 24, 148, 260, 746, 760, 955
AsuII TTCGAA 2 cut(s) 241, 299
AvaI CYCGRG 1 cut(s) 5
AvaII GGWCC 3 cut(s) 175, 797, 974
AvrII CCTAGG 1 cut(s) 800
BaeGI GKGCMC 1 cut(s) 12
BalI TGGCCA 1 cut(s) 595
BanI GGYRCC 1 cut(s) 9
BbvI GCAGC 6 cut(s) 503, 630, 655, 658, 661, 1006
BccI CCATC 6 cut(s) 170, 254, 342, 507, 585, 930
BceAI ACGGC 3 cut(s) 29, 474, 1113
BciT130I CCWGG 2 cut(s) 470, 978
BcnI CCSGG 5 cut(s) 188, 902, 916, 987, 995
BcoDI GTCTC 1 cut(s) 778
BfaI CTAG 2 cut(s) 635, 801
BfmI CTRYAG 1 cut(s) 115
BlnI CCTAGG 1 cut(s) 800
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 7 cut(s) 188, 470, 902, 916, 978, 987, 995
Bme18I GGWCC 3 cut(s) 175, 797, 974
BmeT110I CYCGRG 1 cut(s) 5
BmgT120I GGNCC 5 cut(s) 175, 466, 797, 974, 980
BmiI GGNNCC 3 cut(s) 11, 561, 920
BmrFI CCNGG 7 cut(s) 188, 470, 902, 916, 978, 987, 995
BmsI GCATC 4 cut(s) 241, 312, 1082, 1235
BplI GAGNNNNNCTC 2 cut(s) 742, 774
Bpu14I TTCGAA 2 cut(s) 241, 299
BpuMI CCSGG 5 cut(s) 188, 902, 916, 987, 995
BsaBI GATNNNNATC 2 cut(s) 242, 326
BsaHI GRCGYC 1 cut(s) 392
BsaJI CCNNGG 5 cut(s) 315, 462, 800, 970, 977
BsaWI WCCGGW 1 cut(s) 810
BsaXI ACNNNNNCTCC 2 cut(s) 844, 874
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 901, 1031
Bse3DI GCAATG 1 cut(s) 96
Bse8I GATNNNNATC 2 cut(s) 242, 326
BseAI TCCGGA 1 cut(s) 810
BseBI CCWGG 2 cut(s) 470, 978
BseDI CCNNGG 5 cut(s) 315, 462, 800, 970, 977
BseGI GGATG 2 cut(s) 353, 504
BseJI GATNNNNATC 2 cut(s) 242, 326
BseLI CCNNNNNNNGG 3 cut(s) 100, 901, 1031
BseMI GCAATG 1 cut(s) 96
BseRI GAGGAG 3 cut(s) 139, 873, 1115
BseSI GKGCMC 1 cut(s) 12
BseX3I CGGCCG 2 cut(s) 903, 1098
BseXI GCAGC 6 cut(s) 503, 630, 655, 658, 661, 1006
Bsh1236I CGCG 1 cut(s) 389
Bsh1285I CGRYCG 5 cut(s) 906, 991, 1004, 1101, 1224
BshNI GGYRCC 1 cut(s) 9
BsiEI CGRYCG 5 cut(s) 906, 991, 1004, 1101, 1224
BsiHKCI CYCGRG 1 cut(s) 5
BslI CCNNNNNNNGG 3 cut(s) 100, 901, 1031
BsmAI GTCTC 1 cut(s) 778
BsoBI CYCGRG 1 cut(s) 5
Bsp119I TTCGAA 2 cut(s) 241, 299
Bsp1286I GDGCHC 1 cut(s) 12
Bsp13I TCCGGA 1 cut(s) 810
Bsp1407I TGTACA 1 cut(s) 607
Bsp19I CCATGG 1 cut(s) 462
BspEI TCCGGA 1 cut(s) 810
BspFNI CGCG 1 cut(s) 389
BspLI GGNNCC 3 cut(s) 11, 561, 920
BspPI GGATC 6 cut(s) 28, 405, 727, 850, 1042, 1097
BspQI GCTCTTC 1 cut(s) 759
BspT104I TTCGAA 2 cut(s) 241, 299
BspT107I GGYRCC 1 cut(s) 9
BsrBI CCGCTC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 96
BsrGI TGTACA 1 cut(s) 607
BssECI CCNNGG 5 cut(s) 315, 462, 800, 970, 977
BssNI GRCGYC 1 cut(s) 392
BssT1I CCWWGG 2 cut(s) 462, 800
Bst2UI CCWGG 2 cut(s) 470, 978
Bst4CI ACNGT 1 cut(s) 1207
Bst6I CTCTTC 2 cut(s) 225, 759
BstACI GRCGYC 1 cut(s) 392
BstAPI GCANNNNNTGC 1 cut(s) 1055
BstAUI TGTACA 1 cut(s) 607
BstBI TTCGAA 2 cut(s) 241, 299
BstC8I GCNNGC 4 cut(s) 42, 84, 197, 387
BstDSI CCRYGG 2 cut(s) 315, 462
BstF5I GGATG 2 cut(s) 353, 504
BstFNI CGCG 1 cut(s) 389
BstMAI GTCTC 1 cut(s) 778
BstMCI CGRYCG 5 cut(s) 906, 991, 1004, 1101, 1224
BstMWI GCNNNNNNNGC 6 cut(s) 57, 674, 680, 689, 1055, 1156
BstNI CCWGG 2 cut(s) 470, 978
BstSCI CCNGG 7 cut(s) 186, 468, 900, 914, 976, 985, 993
BstSFI CTRYAG 1 cut(s) 115
BstSLI GKGCMC 1 cut(s) 12
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 6 cut(s) 503, 630, 655, 658, 661, 1006
BstX2I RGATCY 1 cut(s) 719
BstXI CCANNNNNNTGG 1 cut(s) 169
BstYI RGATCY 1 cut(s) 719
BstZI CGGCCG 2 cut(s) 903, 1098
BtgI CCRYGG 2 cut(s) 315, 462
BtgZI GCGATG 2 cut(s) 293, 1105
BtsCI GGATG 2 cut(s) 353, 504
Cac8I GCNNGC 4 cut(s) 42, 84, 197, 387
Cfr13I GGNCC 5 cut(s) 175, 466, 797, 974, 980
CseI GACGC 1 cut(s) 381
Csp6I GTAC 2 cut(s) 304, 608
CviAII CATG 2 cut(s) 463, 1147
CviQI GTAC 2 cut(s) 304, 608
EaeI YGGCCR 8 cut(s) 415, 459, 593, 903, 936, 946, 1098, 1234
EagI CGGCCG 2 cut(s) 903, 1098
Eam1104I CTCTTC 2 cut(s) 225, 759
EarI CTCTTC 2 cut(s) 225, 759
EciI GGCGGA 1 cut(s) 38
EclXI CGGCCG 2 cut(s) 903, 1098
Eco130I CCWWGG 2 cut(s) 462, 800
Eco47I GGWCC 3 cut(s) 175, 797, 974
Eco52I CGGCCG 2 cut(s) 903, 1098
Eco88I CYCGRG 1 cut(s) 5
EcoO109I RGGNCCY 2 cut(s) 175, 797
EcoRII CCWGG 2 cut(s) 468, 976
EcoT14I CCWWGG 2 cut(s) 462, 800
ErhI CCWWGG 2 cut(s) 462, 800
FaeI CATG 2 cut(s) 466, 1150
FaiI YATR 7 cut(s) 107, 117, 134, 225, 464, 629, 1148
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 2 cut(s) 462, 1146
FauI CCCGC 2 cut(s) 1021, 1075
FblI GTMKAC 2 cut(s) 111, 284
FokI GGATG 2 cut(s) 360, 491
FspBI CTAG 2 cut(s) 635, 801
HgaI GACGC 1 cut(s) 381
Hin1I GRCGYC 1 cut(s) 392
Hin1II CATG 2 cut(s) 466, 1150
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 5 cut(s) 146, 238, 243, 786, 1217
HphI GGTGA 6 cut(s) 24, 148, 260, 746, 760, 955
Hpy166II GTNNAC 2 cut(s) 112, 285
Hpy188I TCNGA 7 cut(s) 20, 216, 332, 512, 864, 974, 1231
Hpy188III TCNNGA 5 cut(s) 127, 563, 761, 811, 1118
Hpy8I GTNNAC 2 cut(s) 112, 285
Hpy99I CGWCG 7 cut(s) 289, 292, 397, 408, 411, 431, 502
HpyAV CCTTC 3 cut(s) 319, 788, 1033
HpyCH4III ACNGT 1 cut(s) 1207
HpyCH4IV ACGT 2 cut(s) 290, 891
HpyCH4V TGCA 4 cut(s) 82, 254, 1058, 1095
HpyF10VI GCNNNNNNNGC 6 cut(s) 57, 674, 680, 689, 1055, 1156
HpySE526I ACGT 2 cut(s) 290, 891
Hsp92I GRCGYC 1 cut(s) 392
Hsp92II CATG 2 cut(s) 466, 1150
Kpn2I TCCGGA 1 cut(s) 810
LguI GCTCTTC 1 cut(s) 759
LmnI GCTCC 5 cut(s) 499, 565, 924, 1027, 1178
Lsp1109I GCAGC 6 cut(s) 503, 630, 655, 658, 661, 1006
LweI GCATC 4 cut(s) 241, 312, 1082, 1235
MaeI CTAG 2 cut(s) 635, 801
MaeII ACGT 2 cut(s) 290, 891
MbiI CCGCTC 1 cut(s) 30
MboII GAAGA 7 cut(s) 242, 379, 494, 600, 776, 852, 917
MflI RGATCY 1 cut(s) 719
MhlI GDGCHC 1 cut(s) 12
MlsI TGGCCA 1 cut(s) 595
MluCI AATT 4 cut(s) 77, 743, 806, 815
MluNI TGGCCA 1 cut(s) 595
MlyI GAGTC 2 cut(s) 140, 780
Mox20I TGGCCA 1 cut(s) 595
MroI TCCGGA 1 cut(s) 810
MscI TGGCCA 1 cut(s) 595
MseI TTAA 3 cut(s) 555, 824, 1243
MslI CAYNNNNRTG 4 cut(s) 167, 461, 1116, 1145
Msp20I TGGCCA 1 cut(s) 595
MspA1I CMGCKG 1 cut(s) 1019
MspR9I CCNGG 7 cut(s) 188, 470, 902, 916, 978, 987, 995
MvaI CCWGG 2 cut(s) 470, 978
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 6 cut(s) 57, 674, 680, 689, 1055, 1156
NciI CCSGG 5 cut(s) 188, 902, 916, 987, 995
NcoI CCATGG 1 cut(s) 462
NlaIII CATG 2 cut(s) 466, 1150
NlaIV GGNNCC 3 cut(s) 11, 561, 920
NmeAIII GCCGAG 1 cut(s) 319
NspV TTCGAA 2 cut(s) 241, 299
PciSI GCTCTTC 1 cut(s) 759
PcsI WCGNNNNNNNCGW 4 cut(s) 296, 340, 860, 1060
PfeI GAWTC 3 cut(s) 238, 243, 1217
PflFI GACNNNGTC 1 cut(s) 107
PleI GAGTC 2 cut(s) 140, 780
PpsI GAGTC 2 cut(s) 140, 780
PpuMI RGGWCCY 2 cut(s) 175, 797
Psp5II RGGWCCY 2 cut(s) 175, 797
Psp6I CCWGG 2 cut(s) 468, 976
PspGI CCWGG 2 cut(s) 468, 976
PspN4I GGNNCC 3 cut(s) 11, 561, 920
PspPI GGNCC 5 cut(s) 175, 466, 797, 974, 980
PspPPI RGGWCCY 2 cut(s) 175, 797
PsuI RGATCY 1 cut(s) 719
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 2 cut(s) 305, 609
RsaNI GTAC 2 cut(s) 304, 608
RseI CAYNNNNRTG 4 cut(s) 167, 461, 1116, 1145
SalI GTCGAC 1 cut(s) 283
SapI GCTCTTC 1 cut(s) 759
SaqAI TTAA 3 cut(s) 555, 824, 1243
Sau96I GGNCC 5 cut(s) 175, 466, 797, 974, 980
ScaI AGTACT 1 cut(s) 305
SchI GAGTC 2 cut(s) 140, 780
ScrFI CCNGG 7 cut(s) 188, 470, 902, 916, 978, 987, 995
SduI GDGCHC 1 cut(s) 12
SfaNI GCATC 4 cut(s) 241, 312, 1082, 1235
SfcI CTRYAG 1 cut(s) 115
SfuI TTCGAA 2 cut(s) 241, 299
SinI GGWCC 3 cut(s) 175, 797, 974
SmiMI CAYNNNNRTG 4 cut(s) 167, 461, 1116, 1145
Sse9I AATT 4 cut(s) 77, 743, 806, 815
SspMI CTAG 2 cut(s) 635, 801
StyD4I CCNGG 7 cut(s) 186, 468, 900, 914, 976, 985, 993
StyI CCWWGG 2 cut(s) 462, 800
TaaI ACNGT 1 cut(s) 1207
TaiI ACGT 2 cut(s) 293, 894
TaqII GACCGA 1 cut(s) 490
TasI AATT 4 cut(s) 77, 743, 806, 815
TatI WGTACW 2 cut(s) 303, 607
TauI GCSGC 6 cut(s) 40, 144, 392, 985, 1019, 1049
TfiI GAWTC 3 cut(s) 238, 243, 1217
Tru1I TTAA 3 cut(s) 555, 824, 1243
Tru9I TTAA 3 cut(s) 555, 824, 1243
TseI GCWGC 6 cut(s) 491, 618, 668, 671, 674, 1019
TspDTI ATGAA 1 cut(s) 495
TspGWI ACGGA 2 cut(s) 486, 862
Tth111I GACNNNGTC 1 cut(s) 107
VpaK11BI GGWCC 3 cut(s) 175, 797, 974
XapI RAATTY 2 cut(s) 806, 815
XmaJI CCTAGG 1 cut(s) 800
XmiI GTMKAC 2 cut(s) 111, 284
XspI CTAG 2 cut(s) 635, 801
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.