Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005446.1

Orthogroup ID

OG0000905

Physical Location & Seq

Genomic Coordinates Reverse (-)

31760 .. 35533

Gene Structure 3774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005446.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atgaaagactcaaaattagcaaagaatcttcatcggtcagagacaatggaaagaaaaccaatgaattccctctctgtattcaccaattctgagattatgaaaatggagaatattttcaaggagacaccacaacaatcacttaatcaggagtttttccaaaatcttgcaacaaatttcagctgccaaccaagccgtgttggaaaatctgatataacaaggcaacaggtggaaggttggttccagagtaaacgaaaagagattcaagccaagggcacttcgtcatctggtgcctttgattgggttgttgaatcccatgaagatctttcagatttgactatgttcagcaatgcacctgacaattctcagaagccaaaagatccatgcgtcacagatctttcagagttggcatttgaagcaaaatcatcgaaagacggtgcatggtatgatgttgcttctttcctctcctacagagttgtcagttcaggagaactagaagttcgagttcgctatgctggatttggtagggaggaggatgaatgggtaaatgtgagaagagcagtgcgtgacagatctattcctctagaagagtccgagtgtcataaggtcaaggttggggatcttgtcctatgcttccaggaacgagaagatgaagctgtctactgtgatgcccatgttctggaaatccagaggagcctacatgaccaaacaggctgcaggtgtatttttgttgttcgcttcgaccatgataaaagcaaggaacaagtttcgttgggaaggttatgttgcaggccttcacaatacacttcttcagccattgttaaacccaatcaggacatcaatactaagcaggagataaatagagacaaggacatgaagttttcttttctttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAWADEE

Protein Analysis

297

Amino Acids

34.19

Weight (kDa)

5.8

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15215 AT1G15215 AT1G15215 AT1G15215
fragaria_vesca	FvH4_1g07250 FvH4_1g07250 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_6g32282 FvH4_6g32283
malus_domestica	MD08G1111600.v1.1 MD09G1204600.v1.1 MD15G1091100.v1.1 MD17G1184800.v1.1
prunus_persica	Prupe.1G445500_v2.0.a1 Prupe.1G445500_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1
pyrus_communis	pycom08g09270 pycom09g12150 pycom15g08510 pycom17g19430
rosa_chinensis	RchiOBHm_Chr2g0140241 RchiOBHm_Chr4g0409031 RchiOBHm_Chr5g0076021 RchiOBHm_Chr5g0078201 RchiOBHm_Chr6g0306581
rosa_laevigata	RLG00000010783 RLG00000019858
rosa_multiflora	Rmu_sc0005446.1_g000009
rosa_roxburghii	Rroxscaffold_1G00035110 Rroxscaffold_2G00082850 Rroxscaffold_2G00104960 Rroxscaffold_3G00232630 Rroxscaffold_5G00355740 Rroxscaffold_5G00365450 Rroxscaffold_5G00380960 Rroxscaffold_7G00161650
rosa_rugosa	Rorug02G0361600 Rorug02G0361700 Rorug02G0361700 Rorug02G0361700 Rorug05G0290900 Rorug05G0291000 Rorug06G0350500 Rorug06G0350600
rosa_samantha	Rh2AG412500 Rh2BG422800 Rh2CG398700 Rh2CG405000 Rh2DG432100 Rh4CG272400 Rh5AG500700 Rh5CG321900 Rh6AG463000 Rh6BG437900 Rh6CG477200 Rh6DG463800
rosa_wichuraiana	Rw2G033810 Rw5G047830 Rw6G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	705
Acc36I	ACCTGC	1 cut(s)	705
AccB1I	GGYRCC	1 cut(s)	287
AccB7I	CCANNNNNTGG	1 cut(s)	676
AccI	GTMKAC	1 cut(s)	657
AclWI	GGATC	2 cut(s)	371, 624
AcsI	RAATTY	2 cut(s)	64, 172
AcuI	CTGAAG	1 cut(s)	792
AfiI	CCNNNNNNNGG	2 cut(s)	297, 676
AgsI	TTSAA	4 cut(s)	118, 263, 308, 413
AjnI	CCWGG	1 cut(s)	633
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	2 cut(s)	180, 653
AluI	AGCT	2 cut(s)	180, 653
Alw26I	GTCTC	3 cut(s)	35, 116, 855
AlwI	GGATC	2 cut(s)	371, 624
AoxI	GGCC	1 cut(s)	788
ApeKI	GCWGC	2 cut(s)	180, 711
ApoI	RAATTY	2 cut(s)	64, 172
Asp700I	GAANNNNTTC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	167, 698
BceAI	ACGGC	1 cut(s)	177
BcgI	CGANNNNNNTGC	2 cut(s)	405, 439
BciT130I	CCWGG	1 cut(s)	635
BcoDI	GTCTC	3 cut(s)	35, 116, 855
BfaI	CTAG	2 cut(s)	491, 581
BfmI	CTRYAG	2 cut(s)	466, 712
BfuAI	ACCTGC	1 cut(s)	705
BglII	AGATCT	3 cut(s)	319, 391, 569
BisI	GCNGC	2 cut(s)	181, 712
BlsI	GCNGC	2 cut(s)	182, 713
Bme1390I	CCNGG	1 cut(s)	635
BmiI	GGNNCC	3 cut(s)	239, 289, 692
BmrFI	CCNGG	1 cut(s)	635
BmsI	GCATC	1 cut(s)	655
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 676
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	635
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	2 cut(s)	297, 676
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	2 cut(s)	81, 377
BseRI	GAGGAG	2 cut(s)	542, 703
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	167, 698
BshFI	GGCC	1 cut(s)	790
BshNI	GGYRCC	1 cut(s)	287
BslI	CCNNNNNNNGG	2 cut(s)	297, 676
BsmAI	GTCTC	3 cut(s)	35, 116, 855
BsnI	GGCC	1 cut(s)	790
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp143I	GATC	5 cut(s)	319, 376, 391, 569, 616
BspANI	GGCC	1 cut(s)	790
BspCNI	CTCAG	2 cut(s)	82, 376
BspLI	GGNNCC	3 cut(s)	239, 289, 692
BspMAI	CTGCAG	1 cut(s)	716
BspMI	ACCTGC	1 cut(s)	705
BspPI	GGATC	2 cut(s)	371, 624
BspQI	GCTCTTC	1 cut(s)	547
BspT107I	GGYRCC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	5 cut(s)	319, 376, 391, 569, 616
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	635
Bst4CI	ACNGT	2 cut(s)	434, 662
Bst6I	CTCTTC	2 cut(s)	547, 579
BstC8I	GCNNGC	1 cut(s)	788
BstDEI	CTNAG	3 cut(s)	90, 363, 843
BstF5I	GGATG	1 cut(s)	538
BstKTI	GATC	5 cut(s)	322, 379, 394, 572, 619
BstMAI	GTCTC	3 cut(s)	35, 116, 855
BstMBI	GATC	5 cut(s)	319, 376, 391, 569, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 413
BstNI	CCWGG	1 cut(s)	635
BstSCI	CCNGG	1 cut(s)	633
BstSFI	CTRYAG	2 cut(s)	466, 712
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	167, 698
BstX2I	RGATCY	5 cut(s)	319, 376, 391, 569, 616
BstYI	RGATCY	5 cut(s)	319, 376, 391, 569, 616
BsuRI	GGCC	1 cut(s)	790
BtsCI	GGATG	1 cut(s)	538
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	1 cut(s)	564
BveI	ACCTGC	1 cut(s)	705
Cac8I	GCNNGC	1 cut(s)	788
CseI	GACGC	1 cut(s)	373
CviAII	CATG	7 cut(s)	314, 381, 438, 671, 698, 743, 871
CviJI	RGCY	9 cut(s)	180, 192, 266, 370, 653, 693, 711, 790, 812
CviKI_1	RGCY	9 cut(s)	180, 192, 266, 370, 653, 693, 711, 790, 812
DdeI	CTNAG	3 cut(s)	90, 363, 843
DpnI	GATC	5 cut(s)	321, 378, 393, 571, 618
DpnII	GATC	5 cut(s)	319, 376, 391, 569, 616
Eam1104I	CTCTTC	2 cut(s)	547, 579
EarI	CTCTTC	2 cut(s)	547, 579
Eco130I	CCWWGG	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	790
Eco57I	CTGAAG	1 cut(s)	792
EcoRI	GAATTC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	633
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	7 cut(s)	317, 384, 441, 674, 701, 746, 874
FatI	CATG	7 cut(s)	313, 380, 437, 670, 697, 742, 870
FblI	GTMKAC	1 cut(s)	657
Fnu4HI	GCNGC	2 cut(s)	181, 712
FokI	GGATG	1 cut(s)	545
Fsp4HI	GCNGC	2 cut(s)	181, 712
FspBI	CTAG	2 cut(s)	491, 581
GluI	GCNGC	2 cut(s)	181, 712
HaeIII	GGCC	1 cut(s)	790
HgaI	GACGC	1 cut(s)	373
Hin1II	CATG	7 cut(s)	317, 384, 441, 674, 701, 746, 874
HinfI	GANTC	5 cut(s)	8, 25, 259, 308, 587
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	248, 658
Hpy188I	TCNGA	7 cut(s)	40, 91, 208, 328, 366, 400, 592
Hpy188III	TCNNGA	7 cut(s)	146, 241, 483, 581, 677, 685, 830
Hpy8I	GTNNAC	2 cut(s)	248, 658
HpyAV	CCTTC	3 cut(s)	224, 768, 801
HpyCH4III	ACNGT	2 cut(s)	434, 662
HpyCH4V	TGCA	5 cut(s)	167, 350, 437, 714, 786
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 413
HpyF3I	CTNAG	3 cut(s)	90, 363, 843
Hsp92II	CATG	7 cut(s)	317, 384, 441, 674, 701, 746, 874
Kzo9I	GATC	5 cut(s)	319, 376, 391, 569, 616
LguI	GCTCTTC	1 cut(s)	547
LmnI	GCTCC	1 cut(s)	690
Lsp1109I	GCAGC	2 cut(s)	167, 698
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	2 cut(s)	491, 581
MaeIII	GTNAC	2 cut(s)	385, 563
MalI	GATC	5 cut(s)	321, 378, 393, 571, 618
MboI	GATC	5 cut(s)	319, 376, 391, 569, 616
MboII	GAAGA	6 cut(s)	20, 329, 564, 596, 656, 798
MflI	RGATCY	5 cut(s)	319, 376, 391, 569, 616
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	5 cut(s)	14, 64, 85, 172, 358
MlyI	GAGTC	2 cut(s)	2, 596
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	6 cut(s)	80, 470, 520, 523, 588, 681
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	2 cut(s)	141, 819
MspA1I	CMGCKG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	635
MvaI	CCWGG	1 cut(s)	635
MwoI	GCNNNNNNNGC	2 cut(s)	189, 413
NdeII	GATC	5 cut(s)	319, 376, 391, 569, 616
NlaIII	CATG	7 cut(s)	317, 384, 441, 674, 701, 746, 874
NlaIV	GGNNCC	3 cut(s)	239, 289, 692
NmuCI	GTSAC	2 cut(s)	385, 563
PaqCI	CACCTGC	1 cut(s)	705
PceI	AGGCCT	1 cut(s)	790
PciSI	GCTCTTC	1 cut(s)	547
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	3 cut(s)	25, 259, 308
PflMI	CCANNNNNTGG	1 cut(s)	676
PfoI	TCCNGGA	1 cut(s)	633
PkrI	GCNGC	2 cut(s)	182, 713
PleI	GAGTC	2 cut(s)	2, 595
PpsI	GAGTC	2 cut(s)	2, 595
Psp6I	CCWGG	1 cut(s)	633
PspGI	CCWGG	1 cut(s)	633
PspN4I	GGNNCC	3 cut(s)	239, 289, 692
PstI	CTGCAG	1 cut(s)	716
PsuI	RGATCY	5 cut(s)	319, 376, 391, 569, 616
PvuII	CAGCTG	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	547
SaqAI	TTAA	2 cut(s)	141, 819
SatI	GCNGC	2 cut(s)	181, 712
Sau3AI	GATC	5 cut(s)	319, 376, 391, 569, 616
SchI	GAGTC	2 cut(s)	2, 596
ScrFI	CCNGG	1 cut(s)	635
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	9 cut(s)	182, 228, 235, 355, 606, 612, 655, 719, 779
SfaNI	GCATC	1 cut(s)	655
SfcI	CTRYAG	2 cut(s)	466, 712
Sse9I	AATT	5 cut(s)	14, 64, 85, 172, 358
SseBI	AGGCCT	1 cut(s)	790
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	2 cut(s)	491, 581
StuI	AGGCCT	1 cut(s)	790
StyD4I	CCNGG	1 cut(s)	633
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	2 cut(s)	434, 662
TaqI	TCGA	3 cut(s)	425, 499, 738
TaqII	GACCGA	1 cut(s)	24
TasI	AATT	5 cut(s)	14, 64, 85, 172, 358
TfiI	GAWTC	3 cut(s)	25, 259, 308
Tru1I	TTAA	2 cut(s)	141, 819
Tru9I	TTAA	2 cut(s)	141, 819
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	2 cut(s)	385, 563
TseI	GCWGC	2 cut(s)	180, 711
Tsp45I	GTSAC	2 cut(s)	385, 563
TspDTI	ATGAA	8 cut(s)	17, 20, 77, 113, 330, 549, 663, 887
TspRI	CASTG	1 cut(s)	564
Van91I	CCANNNNNTGG	1 cut(s)	676
XapI	RAATTY	2 cut(s)	64, 172
XbaI	TCTAGA	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	657
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	2 cut(s)	491, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.