FvH4_2g35340

Protein SAWADEE HOMEODOMAIN HOMOLOG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000905
Physical Location & Seq
Forward (+)
26077932 .. 26081246
3315 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35340.t3

Sequence Viewer

Length: 483 bp
ATGGACCATGGCCTTCGTCCCAGACAGAGGGAGTTCTTCATTGGCTTCACAAAGGGCGAGATGGAGAGAATGGACAAATTGGTGAGGGAATCAGGTGAAGAAGTGCTAGCCAAAGAATTTTGTCAAAATTTGGCCAAAAGTTTCAATCGCTCTGTTGGTCGTGCTGGAAAACCAATTGTGAAATGGATTCAGGTGCAAAATTGGTTCCAGGAAAGGATACAAGAGTTTCCAAACATATTGAAAGATCTCCAGGGAGTTTGTCCTTCCACTAAGGCACCTAAAACCAAAGAAAAACCTAAAGTTCAATCCAAAGCAGAAGAAAAGATCCCAGAGTCAGAGTTGGAATTTGAAGCTAGGTCATCAAAGGATGGGGCATGGTATGATGTTGACATGTTCCTGTGTCACCGAGTTGCTAGTGCGGGAGAAACTTTCGTGTTAGATTTGTTGGATTTGGTGCCGAAGAAGATGAGTGGGTTAACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

161

Amino Acids

18.39

Weight (kDa)

8.4

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 123 - 201 9.8e-26 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 274, 454
AciI CCGC 1 cut(s) 419
AclWI GGATC 1 cut(s) 319
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 3 cut(s) 116, 127, 344
AfiI CCNNNNNNNGG 1 cut(s) 27
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 4 cut(s) 145, 241, 305, 350
AjnI CCWGG 2 cut(s) 207, 249
AluBI AGCT 1 cut(s) 353
AluI AGCT 1 cut(s) 353
AlwI GGATC 1 cut(s) 319
AoxI GGCC 2 cut(s) 10, 132
ApoI RAATTY 3 cut(s) 116, 127, 344
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 94, 107, 395
AsuNHI GCTAGC 1 cut(s) 106
AvaII GGWCC 1 cut(s) 4
BaeI ACNNNNGTAYC 2 cut(s) 209, 242
BalI TGGCCA 1 cut(s) 134
BanI GGYRCC 2 cut(s) 274, 454
BccI CCATC 2 cut(s) 55, 362
BciT130I CCWGG 2 cut(s) 209, 251
BciVI GTATCC 1 cut(s) 210
BfaI CTAG 3 cut(s) 107, 354, 414
BfuI GTATCC 1 cut(s) 210
BglII AGATCT 1 cut(s) 244
Bme1390I CCNGG 2 cut(s) 209, 251
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 206, 276, 456
BmrFI CCNGG 2 cut(s) 209, 251
BmtI GCTAGC 1 cut(s) 110
BpmI CTGGAG 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 7, 250
Bsc4I CCNNNNNNNGG 1 cut(s) 27
BseBI CCWGG 2 cut(s) 209, 251
BseDI CCNNGG 2 cut(s) 7, 250
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 1 cut(s) 27
BshFI GGCC 2 cut(s) 12, 134
BshNI GGYRCC 2 cut(s) 274, 454
BslFI GGGAC 1 cut(s) 3
BslI CCNNNNNNNGG 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 3
BsnI GGCC 2 cut(s) 12, 134
Bsp143I GATC 2 cut(s) 244, 324
Bsp19I CCATGG 1 cut(s) 7
BspACI CCGC 1 cut(s) 419
BspANI GGCC 2 cut(s) 12, 134
BspLI GGNNCC 3 cut(s) 206, 276, 456
BspOI GCTAGC 1 cut(s) 110
BspPI GGATC 1 cut(s) 319
BspT107I GGYRCC 2 cut(s) 274, 454
BssECI CCNNGG 2 cut(s) 7, 250
BssMI GATC 2 cut(s) 244, 324
BssT1I CCWWGG 1 cut(s) 7
Bst2UI CCWGG 2 cut(s) 209, 251
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 270
BstDSI CCRYGG 1 cut(s) 7
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 2 cut(s) 247, 327
BstMBI GATC 2 cut(s) 244, 324
BstNI CCWGG 2 cut(s) 209, 251
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 2 cut(s) 207, 249
BstX2I RGATCY 2 cut(s) 244, 324
BstYI RGATCY 2 cut(s) 244, 324
BsuI GTATCC 1 cut(s) 210
BsuRI GGCC 2 cut(s) 12, 134
BtgI CCRYGG 1 cut(s) 7
BtsCI GGATG 1 cut(s) 373
Cac8I GCNNGC 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 3 cut(s) 8, 375, 391
CviJI RGCY 5 cut(s) 12, 45, 110, 134, 353
CviKI_1 RGCY 5 cut(s) 12, 45, 110, 134, 353
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 246, 326
DpnII GATC 2 cut(s) 244, 324
EaeI YGGCCR 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 207, 249
EcoT14I CCWWGG 1 cut(s) 7
ErhI CCWWGG 1 cut(s) 7
FaeI CATG 3 cut(s) 11, 378, 394
FaiI YATR 5 cut(s) 9, 236, 376, 381, 392
FaqI GGGAC 1 cut(s) 3
FatI CATG 3 cut(s) 7, 374, 390
FauI CCCGC 1 cut(s) 412
FokI GGATG 1 cut(s) 380
FspBI CTAG 3 cut(s) 107, 354, 414
GsuI CTGGAG 1 cut(s) 233
HaeIII GGCC 2 cut(s) 12, 134
Hin1II CATG 3 cut(s) 11, 378, 394
HincII GTYRAC 2 cut(s) 388, 477
HindII GTYRAC 2 cut(s) 388, 477
HinfI GANTC 3 cut(s) 89, 187, 332
HpaI GTTAAC 1 cut(s) 477
HphI GGTGA 3 cut(s) 94, 107, 395
Hpy166II GTNNAC 2 cut(s) 388, 477
Hpy188I TCNGA 1 cut(s) 337
Hpy8I GTNNAC 2 cut(s) 388, 477
HpyAV CCTTC 2 cut(s) 23, 273
HpyCH4IV ACGT 1 cut(s) 479
HpyCH4V TGCA 1 cut(s) 196
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 479
Hsp92II CATG 3 cut(s) 11, 378, 394
KspAI GTTAAC 1 cut(s) 477
Kzo9I GATC 2 cut(s) 244, 324
MaeI CTAG 3 cut(s) 107, 354, 414
MaeII ACGT 1 cut(s) 479
MaeIII GTNAC 1 cut(s) 401
MalI GATC 2 cut(s) 246, 326
MboI GATC 2 cut(s) 244, 324
MboII GAAGA 5 cut(s) 28, 110, 329, 472, 475
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 2 cut(s) 244, 324
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 6 cut(s) 77, 116, 127, 174, 199, 344
MluNI TGGCCA 1 cut(s) 134
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 2 cut(s) 321, 426
MnlI CCTC 2 cut(s) 21, 78
Mox20I TGGCCA 1 cut(s) 134
MscI TGGCCA 1 cut(s) 134
MseI TTAA 1 cut(s) 476
Msp20I TGGCCA 1 cut(s) 134
MspR9I CCNGG 2 cut(s) 209, 251
MunI CAATTG 1 cut(s) 174
MvaI CCWGG 2 cut(s) 209, 251
NcoI CCATGG 1 cut(s) 7
NdeII GATC 2 cut(s) 244, 324
NheI GCTAGC 1 cut(s) 106
NlaIII CATG 3 cut(s) 11, 378, 394
NlaIV GGNNCC 3 cut(s) 206, 276, 456
NmuCI GTSAC 1 cut(s) 401
NspI RCATGY 1 cut(s) 394
PciI ACATGT 1 cut(s) 390
PfeI GAWTC 2 cut(s) 89, 187
PfoI TCCNGGA 1 cut(s) 207
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PscI ACATGT 1 cut(s) 390
Psp6I CCWGG 2 cut(s) 207, 249
PspGI CCWGG 2 cut(s) 207, 249
PspN4I GGNNCC 3 cut(s) 206, 276, 456
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 2 cut(s) 244, 324
SaqAI TTAA 1 cut(s) 476
Sau3AI GATC 2 cut(s) 244, 324
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 2 cut(s) 209, 251
SetI ASST 7 cut(s) 97, 195, 280, 298, 355, 359, 482
SinI GGWCC 1 cut(s) 4
Sse9I AATT 6 cut(s) 77, 116, 127, 174, 199, 344
SsiI CCGC 1 cut(s) 419
SspMI CTAG 3 cut(s) 107, 354, 414
StyD4I CCNGG 2 cut(s) 207, 249
StyI CCWWGG 1 cut(s) 7
TaiI ACGT 1 cut(s) 482
TasI AATT 6 cut(s) 77, 116, 127, 174, 199, 344
TfiI GAWTC 2 cut(s) 89, 187
Tru1I TTAA 1 cut(s) 476
Tru9I TTAA 1 cut(s) 476
TseFI GTSAC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 3 cut(s) 116, 127, 344
XceI RCATGY 1 cut(s) 394
XcmI CCANNNNNNNNNTGG 1 cut(s) 180
XspI CTAG 3 cut(s) 107, 354, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.