Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000905

Physical Location & Seq

Genomic Coordinates Reverse (-)

59450163 .. 59454506

Gene Structure 4344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG422800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTTCTCCAATTACATATCTTCTGTAAAGTTATTTACCATGCTCTGTCCTTTCAGCTGCCAACCAAGCCGTGTTGGAAAATCTGATATAACAAGGCAACAGGTGGAAGGTTGGTTCCAGAGTAAACGAAAAGAGATTCAAGCCAAGGGCACTTCGTCATCTGGTGCCTTTGATTGGGTTGTTGAATCCCATGAAGATCTTTCAGATTTGACTATGTTCAGCAATGCACCTGACAATTCTCAGAAGCCAAAAGATCCATGCGTCACAGATCTTTCAGAGTTGGCATTTGAAGCAAAATCATCGAAAGACGGTGCATGGTATGATGTTGCTTCTTTCCTCTCCTACAGAGTTGTCAGTTCAGGAGAACTAGAAGTTCGAGTTCGCTATGCTGGATTTGGTAGGGAGGAGGATGAATGGGTAAATGTGAGAAGAGCAGTGCGTGACAGATCTATTCCTCTAGAAGAGTCCGAGTGTCATAAGGTCAAGGTTGGGGATCTTGTCCTATGCTTCCAGGAACGAGAAGATGAAGCTGTCTACTGTGATGCCCATGTTCTGGAAATCCAGAGGAGCCTACATGACCAAACAGGCTGCAGGTGTATTTTTGTTGTTCGCTTCGACCATGATAAAAGCAAGGAACAAGTTTCGTTGGGAAGGTTATGTTGCAGGCCTTCACAATACACTTCTTCAGCCATTGTTAAACCCAATCAGGACATCAATACTAAGCAGGAGATAAATAGAGACAAGGACATGAAGTTTTCTTTTCTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAWADEE

Protein Analysis

256

Amino Acids

29.33

Weight (kDa)

5.66

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAWADEE	PF16719	93 - 220	1.8e-45	SAWADEE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15215 AT1G15215 AT1G15215 AT1G15215
fragaria_vesca	FvH4_1g07250 FvH4_1g07250 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_6g32282 FvH4_6g32283
malus_domestica	MD08G1111600.v1.1 MD09G1204600.v1.1 MD15G1091100.v1.1 MD17G1184800.v1.1
prunus_persica	Prupe.1G445500_v2.0.a1 Prupe.1G445500_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1
pyrus_communis	pycom08g09270 pycom09g12150 pycom15g08510 pycom17g19430
rosa_chinensis	RchiOBHm_Chr2g0140241 RchiOBHm_Chr4g0409031 RchiOBHm_Chr5g0076021 RchiOBHm_Chr5g0078201 RchiOBHm_Chr6g0306581
rosa_laevigata	RLG00000010783 RLG00000019858
rosa_multiflora	Rmu_sc0005446.1_g000009
rosa_roxburghii	Rroxscaffold_1G00035110 Rroxscaffold_2G00082850 Rroxscaffold_2G00104960 Rroxscaffold_3G00232630 Rroxscaffold_5G00355740 Rroxscaffold_5G00365450 Rroxscaffold_5G00380960 Rroxscaffold_7G00161650
rosa_rugosa	Rorug02G0361600 Rorug02G0361700 Rorug02G0361700 Rorug02G0361700 Rorug05G0290900 Rorug05G0291000 Rorug06G0350500 Rorug06G0350600
rosa_samantha	Rh2AG412500 Rh2BG422800 Rh2CG398700 Rh2CG405000 Rh2DG432100 Rh4CG272400 Rh5AG500700 Rh5CG321900 Rh6AG463000 Rh6BG437900 Rh6CG477200 Rh6DG463800
rosa_wichuraiana	Rw2G033810 Rw5G047830 Rw6G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	582
Acc36I	ACCTGC	1 cut(s)	582
AccB1I	GGYRCC	1 cut(s)	164
AccB7I	CCANNNNNTGG	1 cut(s)	553
AccI	GTMKAC	1 cut(s)	534
AclWI	GGATC	2 cut(s)	248, 501
AcuI	CTGAAG	1 cut(s)	669
AfiI	CCNNNNNNNGG	2 cut(s)	174, 553
AgsI	TTSAA	3 cut(s)	140, 185, 290
AjnI	CCWGG	1 cut(s)	510
AloI	GAACNNNNNNTCC	2 cut(s)	98, 130
AluBI	AGCT	2 cut(s)	57, 530
AluI	AGCT	2 cut(s)	57, 530
Alw26I	GTCTC	1 cut(s)	732
AlwI	GGATC	2 cut(s)	248, 501
AoxI	GGCC	1 cut(s)	665
ApeKI	GCWGC	2 cut(s)	57, 588
BaeGI	GKGCMC	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	44, 575
BceAI	ACGGC	1 cut(s)	54
BcgI	CGANNNNNNTGC	2 cut(s)	282, 316
BciT130I	CCWGG	1 cut(s)	512
BcoDI	GTCTC	1 cut(s)	732
BfaI	CTAG	2 cut(s)	368, 458
BfmI	CTRYAG	2 cut(s)	343, 589
BfuAI	ACCTGC	1 cut(s)	582
BglII	AGATCT	3 cut(s)	196, 268, 446
BisI	GCNGC	2 cut(s)	58, 589
BlsI	GCNGC	2 cut(s)	59, 590
Bme1390I	CCNGG	1 cut(s)	512
BmiI	GGNNCC	3 cut(s)	116, 166, 569
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	1 cut(s)	532
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 553
Bse3DI	GCAATG	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	2 cut(s)	174, 553
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	254
BseRI	GAGGAG	2 cut(s)	419, 580
BseSI	GKGCMC	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	44, 575
BshFI	GGCC	1 cut(s)	667
BshNI	GGYRCC	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	174, 553
BsmAI	GTCTC	1 cut(s)	732
BsnI	GGCC	1 cut(s)	667
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	5 cut(s)	196, 253, 268, 446, 493
BspANI	GGCC	1 cut(s)	667
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	116, 166, 569
BspMAI	CTGCAG	1 cut(s)	593
BspMI	ACCTGC	1 cut(s)	582
BspPI	GGATC	2 cut(s)	248, 501
BspQI	GCTCTTC	1 cut(s)	424
BspT107I	GGYRCC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	5 cut(s)	196, 253, 268, 446, 493
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	2 cut(s)	311, 539
Bst6I	CTCTTC	2 cut(s)	424, 456
BstC8I	GCNNGC	1 cut(s)	665
BstDEI	CTNAG	2 cut(s)	240, 720
BstF5I	GGATG	1 cut(s)	415
BstKTI	GATC	5 cut(s)	199, 256, 271, 449, 496
BstMAI	GTCTC	1 cut(s)	732
BstMBI	GATC	5 cut(s)	196, 253, 268, 446, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 290
BstNI	CCWGG	1 cut(s)	512
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	2 cut(s)	343, 589
BstSLI	GKGCMC	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	44, 575
BstX2I	RGATCY	5 cut(s)	196, 253, 268, 446, 493
BstYI	RGATCY	5 cut(s)	196, 253, 268, 446, 493
BsuRI	GGCC	1 cut(s)	667
BtsCI	GGATG	1 cut(s)	415
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
BveI	ACCTGC	1 cut(s)	582
Cac8I	GCNNGC	1 cut(s)	665
CseI	GACGC	1 cut(s)	250
CviAII	CATG	8 cut(s)	40, 191, 258, 315, 548, 575, 620, 748
CviJI	RGCY	9 cut(s)	57, 69, 143, 247, 530, 570, 588, 667, 689
CviKI_1	RGCY	9 cut(s)	57, 69, 143, 247, 530, 570, 588, 667, 689
DdeI	CTNAG	2 cut(s)	240, 720
DpnI	GATC	5 cut(s)	198, 255, 270, 448, 495
DpnII	GATC	5 cut(s)	196, 253, 268, 446, 493
Eam1104I	CTCTTC	2 cut(s)	424, 456
EarI	CTCTTC	2 cut(s)	424, 456
Eco130I	CCWWGG	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	667
Eco57I	CTGAAG	1 cut(s)	669
EcoRII	CCWGG	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	8 cut(s)	43, 194, 261, 318, 551, 578, 623, 751
FatI	CATG	8 cut(s)	39, 190, 257, 314, 547, 574, 619, 747
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	2 cut(s)	58, 589
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	2 cut(s)	58, 589
FspBI	CTAG	2 cut(s)	368, 458
GluI	GCNGC	2 cut(s)	58, 589
HaeIII	GGCC	1 cut(s)	667
HgaI	GACGC	1 cut(s)	250
Hin1II	CATG	8 cut(s)	43, 194, 261, 318, 551, 578, 623, 751
HinfI	GANTC	3 cut(s)	136, 185, 464
Hpy166II	GTNNAC	2 cut(s)	125, 535
Hpy188I	TCNGA	5 cut(s)	85, 205, 243, 277, 469
Hpy188III	TCNNGA	6 cut(s)	118, 360, 458, 554, 562, 707
Hpy8I	GTNNAC	2 cut(s)	125, 535
HpyAV	CCTTC	3 cut(s)	101, 645, 678
HpyCH4III	ACNGT	2 cut(s)	311, 539
HpyCH4V	TGCA	4 cut(s)	227, 314, 591, 663
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 290
HpyF3I	CTNAG	2 cut(s)	240, 720
Hsp92II	CATG	8 cut(s)	43, 194, 261, 318, 551, 578, 623, 751
Kzo9I	GATC	5 cut(s)	196, 253, 268, 446, 493
LguI	GCTCTTC	1 cut(s)	424
LmnI	GCTCC	1 cut(s)	567
Lsp1109I	GCAGC	2 cut(s)	44, 575
LweI	GCATC	1 cut(s)	532
MaeI	CTAG	2 cut(s)	368, 458
MaeIII	GTNAC	2 cut(s)	262, 440
MalI	GATC	5 cut(s)	198, 255, 270, 448, 495
MboI	GATC	5 cut(s)	196, 253, 268, 446, 493
MboII	GAAGA	6 cut(s)	12, 206, 441, 473, 533, 675
MflI	RGATCY	5 cut(s)	196, 253, 268, 446, 493
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	2 cut(s)	10, 235
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	5 cut(s)	347, 397, 400, 465, 558
MseI	TTAA	1 cut(s)	696
MspA1I	CMGCKG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	512
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	2 cut(s)	66, 290
NdeII	GATC	5 cut(s)	196, 253, 268, 446, 493
NlaIII	CATG	8 cut(s)	43, 194, 261, 318, 551, 578, 623, 751
NlaIV	GGNNCC	3 cut(s)	116, 166, 569
NmuCI	GTSAC	2 cut(s)	262, 440
PaqCI	CACCTGC	1 cut(s)	582
PceI	AGGCCT	1 cut(s)	667
PciSI	GCTCTTC	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	136, 185
PflMI	CCANNNNNTGG	1 cut(s)	553
PfoI	TCCNGGA	1 cut(s)	510
PkrI	GCNGC	2 cut(s)	59, 590
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	3 cut(s)	116, 166, 569
PstI	CTGCAG	1 cut(s)	593
PsuI	RGATCY	5 cut(s)	196, 253, 268, 446, 493
PvuII	CAGCTG	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	696
SatI	GCNGC	2 cut(s)	58, 589
Sau3AI	GATC	5 cut(s)	196, 253, 268, 446, 493
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	9 cut(s)	59, 105, 112, 232, 483, 489, 532, 596, 656
SfaNI	GCATC	1 cut(s)	532
SfcI	CTRYAG	2 cut(s)	343, 589
Sse9I	AATT	2 cut(s)	10, 235
SseBI	AGGCCT	1 cut(s)	667
SspMI	CTAG	2 cut(s)	368, 458
StuI	AGGCCT	1 cut(s)	667
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	311, 539
TaqI	TCGA	3 cut(s)	302, 376, 615
TasI	AATT	2 cut(s)	10, 235
TfiI	GAWTC	2 cut(s)	136, 185
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TscAI	CASTG	1 cut(s)	441
TseFI	GTSAC	2 cut(s)	262, 440
TseI	GCWGC	2 cut(s)	57, 588
Tsp45I	GTSAC	2 cut(s)	262, 440
TspDTI	ATGAA	4 cut(s)	207, 426, 540, 764
TspRI	CASTG	1 cut(s)	441
Van91I	CCANNNNNTGG	1 cut(s)	553
XbaI	TCTAGA	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	534
XspI	CTAG	2 cut(s)	368, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.