Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0000905

Physical Location & Seq

Genomic Coordinates Forward (+)

10586794 .. 10590757

Gene Structure 3964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGACAATTTTCGTACAAGAAAAAGAGATACAATGAATTCTCTCTCTGTATTCACTCACTCTGAGATTATGGAAATGGAGAATTTAATTAAGCATGTCGGAAAGCAATCACTTACTCAGGAGTTTTTCCAAGACCTTGCAACAAGTTTCAGTTGCGCTCCAATCCGTGCTGGAAAACCTGATGTAACATGGGAACAGGTGCAAAGTTGGTTCCAGGACAAACAAAAAGAGCTGCAACCCAAAAATACTTCCTCGCCTAATGCTGTCGAGTTATTTTCAGATTCAAATGTCTCAAGAAATGCACCTCAAGTTTCTCAGAAGCCAAAAGGTAAATGGGTCACAGAACTTTCAGAGTTGGCATTTGAAGCAAAATCATCAAAAGATGATGCATGGTACGATGTTGCTACTTTCCTCTCATACAAAGTAGTCAGTTCAGGAGACCTTGAAGTTAAAGTGCGGTTTTCCGGATTTGGTAGGGAGGAAGATGAGTGGGTGAATGTGAGAGGTGCAGTGCGTGATCGATCTATTCCTTTGGAAGCTTCTGAGTGTTCGAAGGTGAATGTTGGGGACCTAGTGCTGTGCTTCCAGGAAAGAGAACATCAAGCTGTATACTGTGATGCCGAAGTTGTGGTCATCCACAGGGGGCTACATGACATGAACGGTGCTTGCAAGTGTACCTTTGTTGTTCGCTTTGACCATGATAGCTCCGAGGAACATGTTGAGCTGGGGAGGTTATGTATCAGGCCTGCACAAAGCACTTCAGGCTATACTAAAACCCAACCGGAGCTCTTTACAAACAGGGACATGAAATTCTCTTTTCTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAWADEE

Protein Analysis

276

Amino Acids

31.4

Weight (kDa)

5.59

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15215 AT1G15215 AT1G15215 AT1G15215
fragaria_vesca	FvH4_1g07250 FvH4_1g07250 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_6g32282 FvH4_6g32283
malus_domestica	MD08G1111600.v1.1 MD09G1204600.v1.1 MD15G1091100.v1.1 MD17G1184800.v1.1
prunus_persica	Prupe.1G445500_v2.0.a1 Prupe.1G445500_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1
pyrus_communis	pycom08g09270 pycom09g12150 pycom15g08510 pycom17g19430
rosa_chinensis	RchiOBHm_Chr2g0140241 RchiOBHm_Chr4g0409031 RchiOBHm_Chr5g0076021 RchiOBHm_Chr5g0078201 RchiOBHm_Chr6g0306581
rosa_laevigata	RLG00000010783 RLG00000019858
rosa_multiflora	Rmu_sc0005446.1_g000009
rosa_roxburghii	Rroxscaffold_1G00035110 Rroxscaffold_2G00082850 Rroxscaffold_2G00104960 Rroxscaffold_3G00232630 Rroxscaffold_5G00355740 Rroxscaffold_5G00365450 Rroxscaffold_5G00380960 Rroxscaffold_7G00161650
rosa_rugosa	Rorug02G0361600 Rorug02G0361700 Rorug02G0361700 Rorug02G0361700 Rorug05G0290900 Rorug05G0291000 Rorug06G0350500 Rorug06G0350600
rosa_samantha	Rh2AG412500 Rh2BG422800 Rh2CG398700 Rh2CG405000 Rh2DG432100 Rh4CG272400 Rh5AG500700 Rh5CG321900 Rh6AG463000 Rh6BG437900 Rh6CG477200 Rh6DG463800
rosa_wichuraiana	Rw2G033810 Rw5G047830 Rw6G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	609
AccIII	TCCGGA	1 cut(s)	464
AciI	CCGC	1 cut(s)	457
AcsI	RAATTY	3 cut(s)	37, 82, 809
AcuI	CTGAAG	1 cut(s)	744
AfaI	GTAC	3 cut(s)	16, 395, 676
AflIII	ACRYGT	1 cut(s)	715
AgsI	TTSAA	3 cut(s)	285, 365, 446
AjnI	CCWGG	2 cut(s)	213, 585
AluBI	AGCT	6 cut(s)	232, 539, 605, 705, 724, 787
AluI	AGCT	6 cut(s)	232, 539, 605, 705, 724, 787
Alw21I	GWGCWC	1 cut(s)	789
Alw26I	GTCTC	2 cut(s)	295, 432
Aor13HI	TCCGGA	1 cut(s)	464
AoxI	GGCC	1 cut(s)	743
ApeKI	GCWGC	1 cut(s)	232
ApoI	RAATTY	3 cut(s)	37, 82, 809
ArsI	GACNNNNNNTTYG	2 cut(s)	615, 647
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	568
AsuHPI	GGTGA	2 cut(s)	505, 568
AsuII	TTCGAA	1 cut(s)	551
AvaII	GGWCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	789
Bbv12I	GWGCWC	1 cut(s)	789
BbvI	GCAGC	1 cut(s)	219
BciT130I	CCWGG	2 cut(s)	215, 587
BcoDI	GTCTC	2 cut(s)	295, 432
BfaI	CTAG	1 cut(s)	572
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
Bme1390I	CCNGG	2 cut(s)	215, 587
Bme18I	GGWCC	1 cut(s)	568
BmgT120I	GGNCC	1 cut(s)	568
BmiI	GGNNCC	2 cut(s)	212, 569
BmrFI	CCNGG	2 cut(s)	215, 587
BmsI	GCATC	2 cut(s)	376, 607
Bpu14I	TTCGAA	1 cut(s)	551
BpuEI	CTTGAG	2 cut(s)	277, 291
Bsa29I	ATCGAT	1 cut(s)	520
BsaI	GGTCTC	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	708
BsaWI	WCCGGW	2 cut(s)	464, 781
BsaXI	ACNNNNNCTCC	2 cut(s)	721, 751
BseAI	TCCGGA	1 cut(s)	464
BseBI	CCWGG	2 cut(s)	215, 587
BseCI	ATCGAT	1 cut(s)	520
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	1 cut(s)	633
BseMII	CTCAG	4 cut(s)	54, 131, 329, 534
BseXI	GCAGC	1 cut(s)	219
BseYI	CCCAGC	1 cut(s)	724
BsgI	GTGCAG	2 cut(s)	528, 732
BshFI	GGCC	1 cut(s)	745
BshVI	ATCGAT	1 cut(s)	520
BsiHKAI	GWGCWC	1 cut(s)	789
BsiSI	CCGG	2 cut(s)	465, 782
BslFI	GGGAC	2 cut(s)	581, 815
BsmAI	GTCTC	2 cut(s)	295, 432
BsmFI	GGGAC	2 cut(s)	581, 815
BsnI	GGCC	1 cut(s)	745
Bso31I	GGTCTC	1 cut(s)	432
Bsp119I	TTCGAA	1 cut(s)	551
Bsp1286I	GDGCHC	1 cut(s)	789
Bsp13I	TCCGGA	1 cut(s)	464
Bsp143I	GATC	2 cut(s)	517, 521
BspACI	CCGC	1 cut(s)	457
BspANI	GGCC	1 cut(s)	745
BspCNI	CTCAG	4 cut(s)	55, 130, 328, 535
BspDI	ATCGAT	1 cut(s)	520
BspEI	TCCGGA	1 cut(s)	464
BspLI	GGNNCC	2 cut(s)	212, 569
BspT104I	TTCGAA	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	432
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	2 cut(s)	517, 521
BssNAI	GTATAC	1 cut(s)	610
Bst1107I	GTATAC	1 cut(s)	610
Bst2UI	CCWGG	2 cut(s)	215, 587
Bst4CI	ACNGT	2 cut(s)	614, 662
BstBI	TTCGAA	1 cut(s)	551
BstC8I	GCNNGC	2 cut(s)	667, 747
BstDEI	CTNAG	4 cut(s)	63, 117, 315, 543
BstF5I	GGATG	1 cut(s)	633
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	2 cut(s)	520, 524
BstMAI	GTCTC	2 cut(s)	295, 432
BstMBI	GATC	2 cut(s)	517, 521
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 762
BstNI	CCWGG	2 cut(s)	215, 587
BstNSI	RCATGY	2 cut(s)	98, 719
BstSCI	CCNGG	2 cut(s)	213, 585
BstV1I	GCAGC	1 cut(s)	219
BstZ17I	GTATAC	1 cut(s)	610
Bsu15I	ATCGAT	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	745
BsuTUI	ATCGAT	1 cut(s)	520
BtsCI	GGATG	1 cut(s)	633
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	1 cut(s)	516
Cac8I	GCNNGC	2 cut(s)	667, 747
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	568
ClaI	ATCGAT	1 cut(s)	520
Csp6I	GTAC	3 cut(s)	15, 394, 675
CviAII	CATG	8 cut(s)	95, 189, 390, 650, 655, 698, 716, 805
CviQI	GTAC	3 cut(s)	15, 394, 675
DdeI	CTNAG	4 cut(s)	63, 117, 315, 543
DpnI	GATC	2 cut(s)	519, 523
DpnII	GATC	2 cut(s)	517, 521
Ecl136II	GAGCTC	1 cut(s)	787
Eco147I	AGGCCT	1 cut(s)	745
Eco24I	GRGCYC	1 cut(s)	789
Eco31I	GGTCTC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	568
Eco53kI	GAGCTC	1 cut(s)	787
Eco57I	CTGAAG	1 cut(s)	744
EcoICRI	GAGCTC	1 cut(s)	787
EcoO109I	RGGNCCY	1 cut(s)	568
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	213, 585
EcoT22I	ATGCAT	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	789
FaeI	CATG	8 cut(s)	98, 192, 393, 653, 658, 701, 719, 808
FalI	AAGNNNNNCTT	2 cut(s)	662, 694
FaqI	GGGAC	2 cut(s)	581, 815
FatI	CATG	8 cut(s)	94, 188, 389, 649, 654, 697, 715, 804
FblI	GTMKAC	1 cut(s)	609
Fnu4HI	GCNGC	1 cut(s)	233
FokI	GGATG	1 cut(s)	620
FriOI	GRGCYC	1 cut(s)	789
Fsp4HI	GCNGC	1 cut(s)	233
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	233
GsaI	CCCAGC	1 cut(s)	728
HaeIII	GGCC	1 cut(s)	745
HapII	CCGG	2 cut(s)	465, 782
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	8 cut(s)	98, 192, 393, 653, 658, 701, 719, 808
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HindIII	AAGCTT	1 cut(s)	537
HinfI	GANTC	1 cut(s)	281
HpaII	CCGG	2 cut(s)	465, 782
HphI	GGTGA	2 cut(s)	505, 568
Hpy166II	GTNNAC	2 cut(s)	610, 675
Hpy188I	TCNGA	7 cut(s)	64, 101, 280, 318, 352, 544, 709
Hpy188III	TCNNGA	4 cut(s)	119, 294, 435, 465
Hpy8I	GTNNAC	2 cut(s)	610, 675
HpyAV	CCTTC	1 cut(s)	547
HpyCH4III	ACNGT	2 cut(s)	614, 662
HpyCH4V	TGCA	8 cut(s)	140, 202, 235, 302, 389, 509, 669, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 762
HpyF3I	CTNAG	4 cut(s)	63, 117, 315, 543
Hsp92II	CATG	8 cut(s)	98, 192, 393, 653, 658, 701, 719, 808
HspAI	GCGC	1 cut(s)	156
Kpn2I	TCCGGA	1 cut(s)	464
Kzo9I	GATC	2 cut(s)	517, 521
LmnI	GCTCC	3 cut(s)	163, 710, 784
Lsp1109I	GCAGC	1 cut(s)	219
LweI	GCATC	2 cut(s)	376, 607
MaeI	CTAG	1 cut(s)	572
MaeIII	GTNAC	2 cut(s)	184, 337
MalI	GATC	2 cut(s)	519, 523
MboI	GATC	2 cut(s)	517, 521
MboII	GAAGA	1 cut(s)	494
MhlI	GDGCHC	1 cut(s)	789
MluCI	AATT	5 cut(s)	7, 37, 82, 87, 809
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	7 cut(s)	262, 315, 422, 472, 497, 703, 723
Mph1103I	ATGCAT	1 cut(s)	391
MroI	TCCGGA	1 cut(s)	464
MseI	TTAA	3 cut(s)	86, 90, 450
MspI	CCGG	2 cut(s)	465, 782
MspR9I	CCNGG	2 cut(s)	215, 587
MvaI	CCWGG	2 cut(s)	215, 587
MwoI	GCNNNNNNNGC	2 cut(s)	365, 762
NdeII	GATC	2 cut(s)	517, 521
NlaIII	CATG	8 cut(s)	98, 192, 393, 653, 658, 701, 719, 808
NlaIV	GGNNCC	2 cut(s)	212, 569
NmuCI	GTSAC	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	2 cut(s)	98, 719
NspV	TTCGAA	1 cut(s)	551
PacI	TTAATTAA	1 cut(s)	90
PceI	AGGCCT	1 cut(s)	745
PciI	ACATGT	1 cut(s)	715
PfeI	GAWTC	1 cut(s)	281
PfoI	TCCNGGA	2 cut(s)	213, 585
PkrI	GCNGC	1 cut(s)	234
PpuMI	RGGWCCY	1 cut(s)	568
PscI	ACATGT	1 cut(s)	715
Psp124BI	GAGCTC	1 cut(s)	789
Psp5II	RGGWCCY	1 cut(s)	568
Psp6I	CCWGG	2 cut(s)	213, 585
PspFI	CCCAGC	1 cut(s)	724
PspGI	CCWGG	2 cut(s)	213, 585
PspN4I	GGNNCC	2 cut(s)	212, 569
PspPI	GGNCC	1 cut(s)	568
PspPPI	RGGWCCY	1 cut(s)	568
RsaI	GTAC	3 cut(s)	16, 395, 676
RsaNI	GTAC	3 cut(s)	15, 394, 675
SacI	GAGCTC	1 cut(s)	789
SaqAI	TTAA	3 cut(s)	86, 90, 450
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	2 cut(s)	517, 521
Sau96I	GGNCC	1 cut(s)	568
ScrFI	CCNGG	2 cut(s)	215, 587
SduI	GDGCHC	1 cut(s)	789
SfaNI	GCATC	2 cut(s)	376, 607
SfuI	TTCGAA	1 cut(s)	551
SinI	GGWCC	1 cut(s)	568
SmlI	CTYRAG	2 cut(s)	292, 306
SmoI	CTYRAG	2 cut(s)	292, 306
Sse9I	AATT	5 cut(s)	7, 37, 82, 87, 809
SseBI	AGGCCT	1 cut(s)	745
SsiI	CCGC	1 cut(s)	457
SspMI	CTAG	1 cut(s)	572
SstI	GAGCTC	1 cut(s)	789
StuI	AGGCCT	1 cut(s)	745
StyD4I	CCNGG	2 cut(s)	213, 585
TaaI	ACNGT	2 cut(s)	614, 662
TaqI	TCGA	3 cut(s)	267, 520, 551
TasI	AATT	5 cut(s)	7, 37, 82, 87, 809
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	3 cut(s)	86, 90, 450
Tru9I	TTAA	3 cut(s)	86, 90, 450
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	3 cut(s)	50, 671, 821
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	568
XapI	RAATTY	3 cut(s)	37, 82, 809
XceI	RCATGY	2 cut(s)	98, 719
XcmI	CCANNNNNNNNNTGG	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	609
XspI	CTAG	1 cut(s)	572
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.