Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000905

Physical Location & Seq

Genomic Coordinates Reverse (-)

5577768 .. 5577998

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00082850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGGATCGCAGCTCCAAGCCGGCCTCCCTCCGGCGTCGCCTCACTCCGCCGCTGCCCCCGGACACGGATCGAAGCCACCCCGGCCTCCGCCGGCCGGACCGGCCGGAAACGAGTTTTCCGGCGTTGCACGGGCCGATCCCTCCCACCATGGTGATCTCCTCCTCTTGCGATCATCCTCATGCCCTCCTTGCTTGACGATTTTGAGTGTGGAGCGAAAGATCAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

76

Amino Acids

7.69

Weight (kDa)

8.84

Isoelectric Point (pI)

67.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15215 AT1G15215 AT1G15215 AT1G15215
fragaria_vesca	FvH4_1g07250 FvH4_1g07250 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_6g32282 FvH4_6g32283
malus_domestica	MD08G1111600.v1.1 MD09G1204600.v1.1 MD15G1091100.v1.1 MD17G1184800.v1.1
prunus_persica	Prupe.1G445500_v2.0.a1 Prupe.1G445500_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1
pyrus_communis	pycom08g09270 pycom09g12150 pycom15g08510 pycom17g19430
rosa_chinensis	RchiOBHm_Chr2g0140241 RchiOBHm_Chr4g0409031 RchiOBHm_Chr5g0076021 RchiOBHm_Chr5g0078201 RchiOBHm_Chr6g0306581
rosa_laevigata	RLG00000010783 RLG00000019858
rosa_multiflora	Rmu_sc0005446.1_g000009
rosa_roxburghii	Rroxscaffold_1G00035110 Rroxscaffold_2G00082850 Rroxscaffold_2G00104960 Rroxscaffold_3G00232630 Rroxscaffold_5G00355740 Rroxscaffold_5G00365450 Rroxscaffold_5G00380960 Rroxscaffold_7G00161650
rosa_rugosa	Rorug02G0361600 Rorug02G0361700 Rorug02G0361700 Rorug02G0361700 Rorug05G0290900 Rorug05G0291000 Rorug06G0350500 Rorug06G0350600
rosa_samantha	Rh2AG412500 Rh2BG422800 Rh2CG398700 Rh2CG405000 Rh2DG432100 Rh4CG272400 Rh5AG500700 Rh5CG321900 Rh6AG463000 Rh6BG437900 Rh6CG477200 Rh6DG463800
rosa_wichuraiana	Rw2G033810 Rw5G047830 Rw6G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	48, 51, 89
AclWI	GGATC	3 cut(s)	13, 76, 131
AcoI	YGGCCR	2 cut(s)	93, 102
AcyI	GRCGYC	1 cut(s)	35
AfiI	CCNNNNNNNGG	3 cut(s)	31, 65, 95
AleI	CACNNNNGTG	1 cut(s)	150
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
AlwI	GGATC	3 cut(s)	13, 76, 131
AoxI	GGCC	5 cut(s)	22, 83, 93, 102, 132
ApeKI	GCWGC	2 cut(s)	10, 53
AspS9I	GGNCC	2 cut(s)	98, 132
AsuC2I	CCSGG	2 cut(s)	60, 82
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	22, 40
BcnI	CCSGG	2 cut(s)	60, 82
BglI	GCCNNNNNGGC	2 cut(s)	82, 101
BisI	GCNGC	3 cut(s)	11, 51, 54
BlsI	GCNGC	3 cut(s)	12, 52, 55
Bme1390I	CCNGG	2 cut(s)	60, 82
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	98, 132
BmrFI	CCNGG	2 cut(s)	60, 82
BpuMI	CCSGG	2 cut(s)	60, 82
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	58, 80, 148
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 65, 95
Bse118I	RCCGGY	3 cut(s)	20, 91, 100
BseDI	CCNNGG	3 cut(s)	58, 80, 148
BseGI	GGATG	1 cut(s)	173
BseLI	CCNNNNNNNGG	3 cut(s)	31, 65, 95
BseRI	GAGGAG	2 cut(s)	149, 152
BseX3I	CGGCCG	2 cut(s)	93, 102
BseXI	GCAGC	2 cut(s)	22, 40
Bsh1285I	CGRYCG	2 cut(s)	96, 105
BshFI	GGCC	5 cut(s)	24, 85, 95, 104, 134
BsiEI	CGRYCG	2 cut(s)	96, 105
BsiSI	CCGG	9 cut(s)	21, 32, 60, 82, 92, 96, 101, 105, 120
BslI	CCNNNNNNNGG	3 cut(s)	31, 65, 95
BsnI	GGCC	5 cut(s)	24, 85, 95, 104, 134
Bsp143I	GATC	6 cut(s)	5, 68, 136, 154, 170, 219
Bsp19I	CCATGG	1 cut(s)	148
BspACI	CCGC	3 cut(s)	48, 51, 89
BspANI	GGCC	5 cut(s)	24, 85, 95, 104, 134
BspPI	GGATC	3 cut(s)	13, 76, 131
BsrFI	RCCGGY	3 cut(s)	20, 91, 100
BssAI	RCCGGY	3 cut(s)	20, 91, 100
BssECI	CCNNGG	3 cut(s)	58, 80, 148
BssMI	GATC	6 cut(s)	5, 68, 136, 154, 170, 219
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	148
BstACI	GRCGYC	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	22, 93
BstDSI	CCRYGG	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	173
BstKTI	GATC	6 cut(s)	8, 71, 139, 157, 173, 222
BstMBI	GATC	6 cut(s)	5, 68, 136, 154, 170, 219
BstMCI	CGRYCG	2 cut(s)	96, 105
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 101, 189
BstSCI	CCNGG	2 cut(s)	58, 80
BstV1I	GCAGC	2 cut(s)	22, 40
BstZI	CGGCCG	2 cut(s)	93, 102
BsuRI	GGCC	5 cut(s)	24, 85, 95, 104, 134
BtgI	CCRYGG	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	173
Cac8I	GCNNGC	2 cut(s)	22, 93
Cfr10I	RCCGGY	3 cut(s)	20, 91, 100
Cfr13I	GGNCC	2 cut(s)	98, 132
CpoI	CGGWCCG	1 cut(s)	98
CseI	GACGC	1 cut(s)	24
CspI	CGGWCCG	1 cut(s)	98
CviAII	CATG	2 cut(s)	149, 180
CviJI	RGCY	8 cut(s)	13, 20, 24, 76, 85, 95, 104, 134
CviKI_1	RGCY	8 cut(s)	13, 20, 24, 76, 85, 95, 104, 134
DpnI	GATC	6 cut(s)	7, 70, 138, 156, 172, 221
DpnII	GATC	6 cut(s)	5, 68, 136, 154, 170, 219
EaeI	YGGCCR	2 cut(s)	93, 102
EagI	CGGCCG	2 cut(s)	93, 102
EciI	GGCGGA	2 cut(s)	37, 78
EclXI	CGGCCG	2 cut(s)	93, 102
Eco130I	CCWWGG	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	98
Eco52I	CGGCCG	2 cut(s)	93, 102
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	2 cut(s)	152, 183
FaiI	YATR	2 cut(s)	150, 181
FatI	CATG	2 cut(s)	148, 179
Fnu4HI	GCNGC	3 cut(s)	11, 51, 54
FokI	GGATG	1 cut(s)	160
Fsp4HI	GCNGC	3 cut(s)	11, 51, 54
GluI	GCNGC	3 cut(s)	11, 51, 54
HaeIII	GGCC	5 cut(s)	24, 85, 95, 104, 134
HapII	CCGG	9 cut(s)	21, 32, 60, 82, 92, 96, 101, 105, 120
HgaI	GACGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	152, 183
HpaII	CCGG	9 cut(s)	21, 32, 60, 82, 92, 96, 101, 105, 120
HphI	GGTGA	1 cut(s)	164
Hpy99I	CGWCG	1 cut(s)	40
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 101, 189
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	152, 183
KroI	GCCGGC	2 cut(s)	20, 91
KroNI	GCCGGC	2 cut(s)	22, 93
Kzo9I	GATC	6 cut(s)	5, 68, 136, 154, 170, 219
LmnI	GCTCC	2 cut(s)	18, 211
LpnPI	CCDG	9 cut(s)	34, 45, 73, 95, 105, 109, 114, 118, 133
Lsp1109I	GCAGC	2 cut(s)	22, 40
MalI	GATC	6 cut(s)	7, 70, 138, 156, 172, 221
MboI	GATC	6 cut(s)	5, 68, 136, 154, 170, 219
MnlI	CCTC	9 cut(s)	35, 39, 51, 96, 151, 170, 173, 187, 195
MroNI	GCCGGC	2 cut(s)	20, 91
MslI	CAYNNNNRTG	2 cut(s)	150, 178
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	9 cut(s)	21, 32, 60, 82, 92, 96, 101, 105, 120
MspR9I	CCNGG	2 cut(s)	60, 82
MwoI	GCNNNNNNNGC	3 cut(s)	82, 101, 189
NaeI	GCCGGC	2 cut(s)	22, 93
NciI	CCSGG	2 cut(s)	60, 82
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	6 cut(s)	5, 68, 136, 154, 170, 219
NgoMIV	GCCGGC	2 cut(s)	20, 91
NlaIII	CATG	2 cut(s)	152, 183
OliI	CACNNNNGTG	1 cut(s)	150
PdiI	GCCGGC	2 cut(s)	22, 93
PkrI	GCNGC	3 cut(s)	12, 52, 55
PspPI	GGNCC	2 cut(s)	98, 132
RseI	CAYNNNNRTG	2 cut(s)	150, 178
Rsr2I	CGGWCCG	1 cut(s)	98
RsrII	CGGWCCG	1 cut(s)	98
SatI	GCNGC	3 cut(s)	11, 51, 54
Sau3AI	GATC	6 cut(s)	5, 68, 136, 154, 170, 219
Sau96I	GGNCC	2 cut(s)	98, 132
ScrFI	CCNGG	2 cut(s)	60, 82
SetI	ASST	1 cut(s)	15
SfiI	GGCCNNNNNGGCC	1 cut(s)	101
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	2 cut(s)	150, 178
SsiI	CCGC	3 cut(s)	48, 51, 89
StyD4I	CCNGG	2 cut(s)	58, 80
StyI	CCWWGG	1 cut(s)	148
TaqI	TCGA	1 cut(s)	71
TauI	GCSGC	1 cut(s)	53
TseI	GCWGC	2 cut(s)	10, 53
TspGWI	ACGGA	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.