Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000905

Physical Location & Seq

Genomic Coordinates Forward (+)

19475226 .. 19479672

Gene Structure 4447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1204600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGACAATTTTCGTACAAGAAAAAGAGATGCAATGAATTCTCTCTCTGTTTTCACTCACTCTGAGATTATGGAAATGGAAAATTTAATTAAGCATGTCGGAAAGCAATCACTTACTCAGGAGTTTTTCCAAGACCTTGCAACAAGTTTCAGTTGTGCTCCAATCCGTGCTGGAAAACCTGATGTAACATGGGAACAGGTGCAAAGTTGGTTCCAGGACAAACAAAAAGAGCTGCAACCCAAAAGCACTTCCTCGCCTAATGCTGTCGAGTTATTGGTTGATTTTTCAGATTCAAATGTCTCAAGAAATGCACCTCAAGTTTCTCAGAAGCCAAAAGGTAAATGGGTCACAGAACTTTCAGAGTTGGCATTTGAAGCAAAATCATCAAAAGATGATGCATGGTACGATGTTGCTACTTTCCTCTCATACAAAGTAGTCAGTTCAGGAGACCTTGAAGTTAAAGTGCGGTTTTCCGGATTTGGTAGGGAGGAAGATGAGTGGGTGAATGTGAGAGGTGCAGTGCGTGAGCGATCTATTCCTTTGGAAGCTTCTGAGTGTTCAAAGGTGAAGCTTGGGGACCTAGTGCTGTGCTTCCAGGAAAGAGAACATCAAGCTGTATACTGTGATGCCGAAGTTGTGGCCATCCACAGGGGGCTACATGACATGAACGGTGCTTGCAAGTGTACCTTTGTTGTTCGCTTTGACCATGATAGCTCCGAGGAACATGTTGAGTTGGGGAGATTATGTATCAGGCCTGCACAAAGCACTTCAGGCTATACTAAAACCCAACCGGAGCTCTTTACAAACAGGGACATGAAATTCTCTTTTCTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAWADEE

Protein Analysis

279

Amino Acids

31.69

Weight (kDa)

5.6

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAWADEE	PF16719	121 - 249	2.5e-43	SAWADEE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15215 AT1G15215 AT1G15215 AT1G15215
fragaria_vesca	FvH4_1g07250 FvH4_1g07250 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_6g32282 FvH4_6g32283
malus_domestica	MD08G1111600.v1.1 MD09G1204600.v1.1 MD15G1091100.v1.1 MD17G1184800.v1.1
prunus_persica	Prupe.1G445500_v2.0.a1 Prupe.1G445500_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1
pyrus_communis	pycom08g09270 pycom09g12150 pycom15g08510 pycom17g19430
rosa_chinensis	RchiOBHm_Chr2g0140241 RchiOBHm_Chr4g0409031 RchiOBHm_Chr5g0076021 RchiOBHm_Chr5g0078201 RchiOBHm_Chr6g0306581
rosa_laevigata	RLG00000010783 RLG00000019858
rosa_multiflora	Rmu_sc0005446.1_g000009
rosa_roxburghii	Rroxscaffold_1G00035110 Rroxscaffold_2G00082850 Rroxscaffold_2G00104960 Rroxscaffold_3G00232630 Rroxscaffold_5G00355740 Rroxscaffold_5G00365450 Rroxscaffold_5G00380960 Rroxscaffold_7G00161650
rosa_rugosa	Rorug02G0361600 Rorug02G0361700 Rorug02G0361700 Rorug02G0361700 Rorug05G0290900 Rorug05G0291000 Rorug06G0350500 Rorug06G0350600
rosa_samantha	Rh2AG412500 Rh2BG422800 Rh2CG398700 Rh2CG405000 Rh2DG432100 Rh4CG272400 Rh5AG500700 Rh5CG321900 Rh6AG463000 Rh6BG437900 Rh6CG477200 Rh6DG463800
rosa_wichuraiana	Rw2G033810 Rw5G047830 Rw6G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	618
AccIII	TCCGGA	1 cut(s)	473
AciI	CCGC	1 cut(s)	466
AcoI	YGGCCR	1 cut(s)	639
AcsI	RAATTY	3 cut(s)	37, 82, 818
AcuI	CTGAAG	1 cut(s)	753
AfaI	GTAC	3 cut(s)	16, 404, 685
AfiI	CCNNNNNNNGG	1 cut(s)	648
AflIII	ACRYGT	1 cut(s)	724
AgsI	TTSAA	4 cut(s)	294, 374, 455, 561
AjnI	CCWGG	2 cut(s)	213, 594
AluBI	AGCT	6 cut(s)	232, 548, 571, 614, 714, 796
AluI	AGCT	6 cut(s)	232, 548, 571, 614, 714, 796
Alw21I	GWGCWC	2 cut(s)	160, 798
Alw26I	GTCTC	2 cut(s)	304, 441
Aor13HI	TCCGGA	1 cut(s)	473
AoxI	GGCC	2 cut(s)	639, 752
ApeKI	GCWGC	1 cut(s)	232
ApoI	RAATTY	3 cut(s)	37, 82, 818
AspS9I	GGNCC	1 cut(s)	577
AsuHPI	GGTGA	2 cut(s)	514, 577
AvaII	GGWCC	1 cut(s)	577
BalI	TGGCCA	1 cut(s)	641
BanII	GRGCYC	1 cut(s)	798
Bbv12I	GWGCWC	2 cut(s)	160, 798
BbvI	GCAGC	1 cut(s)	219
BccI	CCATC	1 cut(s)	650
BciT130I	CCWGG	2 cut(s)	215, 596
BcoDI	GTCTC	2 cut(s)	304, 441
BfaI	CTAG	1 cut(s)	581
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
Bme1390I	CCNGG	2 cut(s)	215, 596
Bme18I	GGWCC	1 cut(s)	577
BmgT120I	GGNCC	1 cut(s)	577
BmiI	GGNNCC	2 cut(s)	212, 578
BmrFI	CCNGG	2 cut(s)	215, 596
BmsI	GCATC	3 cut(s)	19, 385, 616
BpuEI	CTTGAG	2 cut(s)	286, 300
BsaI	GGTCTC	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	717
BsaWI	WCCGGW	2 cut(s)	473, 790
BsaXI	ACNNNNNCTCC	2 cut(s)	730, 760
Bsc4I	CCNNNNNNNGG	1 cut(s)	648
Bse3DI	GCAATG	1 cut(s)	39
BseAI	TCCGGA	1 cut(s)	473
BseBI	CCWGG	2 cut(s)	215, 596
BseDI	CCNNGG	1 cut(s)	717
BseGI	GGATG	1 cut(s)	642
BseLI	CCNNNNNNNGG	1 cut(s)	648
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	4 cut(s)	54, 131, 338, 543
BseXI	GCAGC	1 cut(s)	219
BsgI	GTGCAG	2 cut(s)	537, 741
BshFI	GGCC	2 cut(s)	641, 754
BsiHKAI	GWGCWC	2 cut(s)	160, 798
BsiSI	CCGG	2 cut(s)	474, 791
BslFI	GGGAC	2 cut(s)	590, 824
BslI	CCNNNNNNNGG	1 cut(s)	648
BsmAI	GTCTC	2 cut(s)	304, 441
BsmFI	GGGAC	2 cut(s)	590, 824
BsnI	GGCC	2 cut(s)	641, 754
Bso31I	GGTCTC	1 cut(s)	441
Bsp1286I	GDGCHC	2 cut(s)	160, 798
Bsp13I	TCCGGA	1 cut(s)	473
Bsp143I	GATC	1 cut(s)	530
BspACI	CCGC	1 cut(s)	466
BspANI	GGCC	2 cut(s)	641, 754
BspCNI	CTCAG	4 cut(s)	55, 130, 337, 544
BspEI	TCCGGA	1 cut(s)	473
BspLI	GGNNCC	2 cut(s)	212, 578
BspTNI	GGTCTC	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	717
BssMI	GATC	1 cut(s)	530
BssNAI	GTATAC	1 cut(s)	619
Bst1107I	GTATAC	1 cut(s)	619
Bst2UI	CCWGG	2 cut(s)	215, 596
Bst4CI	ACNGT	2 cut(s)	623, 671
BstC8I	GCNNGC	2 cut(s)	676, 756
BstDEI	CTNAG	4 cut(s)	63, 117, 324, 552
BstF5I	GGATG	1 cut(s)	642
BstKTI	GATC	1 cut(s)	533
BstMAI	GTCTC	2 cut(s)	304, 441
BstMBI	GATC	1 cut(s)	530
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 771
BstNI	CCWGG	2 cut(s)	215, 596
BstNSI	RCATGY	2 cut(s)	98, 728
BstSCI	CCNGG	2 cut(s)	213, 594
BstV1I	GCAGC	1 cut(s)	219
BstZ17I	GTATAC	1 cut(s)	619
BsuRI	GGCC	2 cut(s)	641, 754
BtsCI	GGATG	1 cut(s)	642
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	1 cut(s)	525
Cac8I	GCNNGC	2 cut(s)	676, 756
Cfr13I	GGNCC	1 cut(s)	577
Csp6I	GTAC	3 cut(s)	15, 403, 684
CviAII	CATG	8 cut(s)	95, 189, 399, 659, 664, 707, 725, 814
CviQI	GTAC	3 cut(s)	15, 403, 684
DdeI	CTNAG	4 cut(s)	63, 117, 324, 552
DpnI	GATC	1 cut(s)	532
DpnII	GATC	1 cut(s)	530
EaeI	YGGCCR	1 cut(s)	639
Ecl136II	GAGCTC	1 cut(s)	796
Eco147I	AGGCCT	1 cut(s)	754
Eco24I	GRGCYC	1 cut(s)	798
Eco31I	GGTCTC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	577
Eco53kI	GAGCTC	1 cut(s)	796
Eco57I	CTGAAG	1 cut(s)	753
EcoICRI	GAGCTC	1 cut(s)	796
EcoO109I	RGGNCCY	1 cut(s)	577
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	213, 594
EcoT22I	ATGCAT	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	798
FaeI	CATG	8 cut(s)	98, 192, 402, 662, 667, 710, 728, 817
FalI	AAGNNNNNCTT	2 cut(s)	671, 703
FaqI	GGGAC	2 cut(s)	590, 824
FatI	CATG	8 cut(s)	94, 188, 398, 658, 663, 706, 724, 813
FblI	GTMKAC	1 cut(s)	618
Fnu4HI	GCNGC	1 cut(s)	233
FokI	GGATG	1 cut(s)	629
FriOI	GRGCYC	1 cut(s)	798
Fsp4HI	GCNGC	1 cut(s)	233
FspBI	CTAG	1 cut(s)	581
GluI	GCNGC	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	641, 754
HapII	CCGG	2 cut(s)	474, 791
Hin1II	CATG	8 cut(s)	98, 192, 402, 662, 667, 710, 728, 817
HindIII	AAGCTT	2 cut(s)	546, 569
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	2 cut(s)	474, 791
HphI	GGTGA	2 cut(s)	514, 577
Hpy166II	GTNNAC	2 cut(s)	619, 684
Hpy188I	TCNGA	7 cut(s)	64, 101, 289, 327, 361, 553, 718
Hpy188III	TCNNGA	4 cut(s)	119, 303, 444, 474
Hpy8I	GTNNAC	2 cut(s)	619, 684
HpyCH4III	ACNGT	2 cut(s)	623, 671
HpyCH4V	TGCA	9 cut(s)	32, 140, 202, 235, 311, 398, 518, 678, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 771
HpyF3I	CTNAG	4 cut(s)	63, 117, 324, 552
Hsp92II	CATG	8 cut(s)	98, 192, 402, 662, 667, 710, 728, 817
Kpn2I	TCCGGA	1 cut(s)	473
Kzo9I	GATC	1 cut(s)	530
LmnI	GCTCC	3 cut(s)	163, 719, 793
Lsp1109I	GCAGC	1 cut(s)	219
LweI	GCATC	3 cut(s)	19, 385, 616
MaeI	CTAG	1 cut(s)	581
MaeIII	GTNAC	2 cut(s)	184, 346
MalI	GATC	1 cut(s)	532
MboI	GATC	1 cut(s)	530
MboII	GAAGA	1 cut(s)	503
MhlI	GDGCHC	2 cut(s)	160, 798
MlsI	TGGCCA	1 cut(s)	641
MluCI	AATT	5 cut(s)	7, 37, 82, 87, 818
MluNI	TGGCCA	1 cut(s)	641
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	6 cut(s)	262, 324, 431, 481, 506, 712
Mox20I	TGGCCA	1 cut(s)	641
Mph1103I	ATGCAT	1 cut(s)	400
MroI	TCCGGA	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	3 cut(s)	86, 90, 459
Msp20I	TGGCCA	1 cut(s)	641
MspI	CCGG	2 cut(s)	474, 791
MspR9I	CCNGG	2 cut(s)	215, 596
MvaI	CCWGG	2 cut(s)	215, 596
MwoI	GCNNNNNNNGC	2 cut(s)	374, 771
NdeII	GATC	1 cut(s)	530
NlaIII	CATG	8 cut(s)	98, 192, 402, 662, 667, 710, 728, 817
NlaIV	GGNNCC	2 cut(s)	212, 578
NmuCI	GTSAC	1 cut(s)	346
NsiI	ATGCAT	1 cut(s)	400
NspI	RCATGY	2 cut(s)	98, 728
PacI	TTAATTAA	1 cut(s)	90
PceI	AGGCCT	1 cut(s)	754
PciI	ACATGT	1 cut(s)	724
PfeI	GAWTC	1 cut(s)	290
PfoI	TCCNGGA	2 cut(s)	213, 594
PkrI	GCNGC	1 cut(s)	234
PpuMI	RGGWCCY	1 cut(s)	577
PscI	ACATGT	1 cut(s)	724
Psp124BI	GAGCTC	1 cut(s)	798
Psp5II	RGGWCCY	1 cut(s)	577
Psp6I	CCWGG	2 cut(s)	213, 594
PspGI	CCWGG	2 cut(s)	213, 594
PspN4I	GGNNCC	2 cut(s)	212, 578
PspPI	GGNCC	1 cut(s)	577
PspPPI	RGGWCCY	1 cut(s)	577
RsaI	GTAC	3 cut(s)	16, 404, 685
RsaNI	GTAC	3 cut(s)	15, 403, 684
SacI	GAGCTC	1 cut(s)	798
SaqAI	TTAA	3 cut(s)	86, 90, 459
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	1 cut(s)	530
Sau96I	GGNCC	1 cut(s)	577
ScrFI	CCNGG	2 cut(s)	215, 596
SduI	GDGCHC	2 cut(s)	160, 798
SfaNI	GCATC	3 cut(s)	19, 385, 616
SinI	GGWCC	1 cut(s)	577
SmlI	CTYRAG	2 cut(s)	301, 315
SmoI	CTYRAG	2 cut(s)	301, 315
Sse9I	AATT	5 cut(s)	7, 37, 82, 87, 818
SseBI	AGGCCT	1 cut(s)	754
SsiI	CCGC	1 cut(s)	466
SspMI	CTAG	1 cut(s)	581
SstI	GAGCTC	1 cut(s)	798
StuI	AGGCCT	1 cut(s)	754
StyD4I	CCNGG	2 cut(s)	213, 594
TaaI	ACNGT	2 cut(s)	623, 671
TaqI	TCGA	1 cut(s)	267
TasI	AATT	5 cut(s)	7, 37, 82, 87, 818
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	3 cut(s)	86, 90, 459
Tru9I	TTAA	3 cut(s)	86, 90, 459
TscAI	CASTG	1 cut(s)	525
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	3 cut(s)	50, 680, 830
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	525
VpaK11BI	GGWCC	1 cut(s)	577
XapI	RAATTY	3 cut(s)	37, 82, 818
XceI	RCATGY	2 cut(s)	98, 728
XcmI	CCANNNNNNNNNTGG	1 cut(s)	339
XmiI	GTMKAC	1 cut(s)	618
XspI	CTAG	1 cut(s)	581
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.