pycom08g09270

Protein SAWADEE HOMEODOMAIN HOMOLOG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000905
Physical Location & Seq
Forward (+)
7525516 .. 7527106
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g09270.6

Sequence Viewer

Length: 414 bp
ATGGACGGTCTTCGTCCCAGAAACAGAGAGATTTTCATCGGCTTTACGATGGCCGAGACAGAAAAAATGGATACATTGATGAGGGAATTAGGAGAGCAAGTGCTGGAACGAGAGTTCTGTCAAAGTACTGCAAAAAGTTTAAATCGCTCTGCAGCTCGTGCTGGGAAGCCTATTGTAATATGGACTGAGTTGCAAAGCTGGTTCGAGAATAGGGTGAAGGAGTCACCAAACATATCCAGAAATTGCCCTTCGAATAAGGCACACAAAAGTTCTGAAATACCTAAAGAAGAAAAGATCCTAGACGTATCAGAGTTGAAGTTTGAGGCAAGGTCATCAAAAGATGGGGCATGGTATGATGTTGAAAAGTTCCTTGCTCACAGATTCCTTAGTAGGGGCGAAACTGTAAGTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

138

Amino Acids

15.82

Weight (kDa)

7.78

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 289
AcoI YGGCCR 1 cut(s) 51
AfaI GTAC 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 391
AgsI TTSAA 2 cut(s) 316, 362
AloI GAACNNNNNNTCC 2 cut(s) 98, 130
AluBI AGCT 2 cut(s) 155, 198
AluI AGCT 2 cut(s) 155, 198
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 1 cut(s) 289
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 216, 226
AsuII TTCGAA 1 cut(s) 251
BauI CACGAG 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 2
BbvI GCAGC 1 cut(s) 164
BccI CCATC 2 cut(s) 43, 335
BciVI GTATCC 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 1 cut(s) 299
BfmI CTRYAG 1 cut(s) 150
BfuI GTATCC 1 cut(s) 64
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmcAI AGTACT 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 2
Bpu14I TTCGAA 1 cut(s) 251
BsaBI GATNNNNATC 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 391
Bse8I GATNNNNATC 1 cut(s) 35
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 164
BseYI CCCAGC 1 cut(s) 161
BshFI GGCC 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 391
BsmAI GTCTC 1 cut(s) 50
BsnI GGCC 1 cut(s) 53
Bsp119I TTCGAA 1 cut(s) 251
Bsp143I GATC 1 cut(s) 294
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 178
BspMAI CTGCAG 1 cut(s) 154
BspPI GGATC 1 cut(s) 289
BspT104I TTCGAA 1 cut(s) 251
BssMI GATC 1 cut(s) 294
BssSI CACGAG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 8, 403
BstAPI GCANNNNNTGC 1 cut(s) 158
BstBI TTCGAA 1 cut(s) 251
BstDEI CTNAG 2 cut(s) 186, 386
BstKTI GATC 1 cut(s) 297
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 1 cut(s) 2
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BsuI GTATCC 1 cut(s) 64
BsuRI GGCC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 126
CviAII CATG 1 cut(s) 348
CviJI RGCY 5 cut(s) 42, 53, 155, 169, 198
CviKI_1 RGCY 5 cut(s) 42, 53, 155, 169, 198
CviQI GTAC 1 cut(s) 126
DdeI CTNAG 2 cut(s) 186, 386
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
DraI TTTAAA 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 51
FaeI CATG 1 cut(s) 351
FaiI YATR 4 cut(s) 181, 233, 349, 354
FatI CATG 1 cut(s) 347
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 299
GluI GCNGC 1 cut(s) 153
GsaI CCCAGC 1 cut(s) 165
HaeIII GGCC 1 cut(s) 53
Hin1II CATG 1 cut(s) 351
HinfI GANTC 2 cut(s) 221, 381
HphI GGTGA 2 cut(s) 216, 226
Hpy188I TCNGA 2 cut(s) 274, 310
Hpy188III TCNNGA 2 cut(s) 205, 237
HpyAV CCTTC 2 cut(s) 211, 258
HpyCH4III ACNGT 2 cut(s) 8, 403
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 3 cut(s) 131, 152, 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 2 cut(s) 186, 386
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 1 cut(s) 351
Kzo9I GATC 1 cut(s) 294
LpnPI CCDG 5 cut(s) 31, 89, 147, 184, 250
Lsp1109I GCAGC 1 cut(s) 164
MaeI CTAG 1 cut(s) 299
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 222
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 1 cut(s) 299
MflI RGATCY 1 cut(s) 294
MluCI AATT 2 cut(s) 86, 241
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 2 cut(s) 75, 316
MseI TTAA 2 cut(s) 140, 412
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 1 cut(s) 294
NlaIII CATG 1 cut(s) 351
NmeAIII GCCGAG 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 222
NspV TTCGAA 1 cut(s) 251
PfeI GAWTC 1 cut(s) 381
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PspFI CCCAGC 1 cut(s) 161
PstI CTGCAG 1 cut(s) 154
PsuI RGATCY 1 cut(s) 294
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
SaqAI TTAA 2 cut(s) 140, 412
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 294
ScaI AGTACT 1 cut(s) 127
SchI GAGTC 1 cut(s) 230
SetI ASST 5 cut(s) 157, 200, 283, 306, 332
SfcI CTRYAG 1 cut(s) 150
SfuI TTCGAA 1 cut(s) 251
Sse9I AATT 2 cut(s) 86, 241
SspMI CTAG 1 cut(s) 299
TaaI ACNGT 2 cut(s) 8, 403
TaiI ACGT 1 cut(s) 306
TaqI TCGA 2 cut(s) 204, 251
TasI AATT 2 cut(s) 86, 241
TatI WGTACW 1 cut(s) 125
TfiI GAWTC 1 cut(s) 381
Tru1I TTAA 2 cut(s) 140, 412
Tru9I TTAA 2 cut(s) 140, 412
TseFI GTSAC 1 cut(s) 222
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 222
TspDTI ATGAA 1 cut(s) 25
XspI CTAG 1 cut(s) 299
ZrmI AGTACT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.