Rorug06G0350600

Protein SAWADEE HOMEODOMAIN HOMOLOG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000905
Physical Location & Seq
Reverse (-)
49980896 .. 49983257
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0350600.1

Sequence Viewer

Length: 1155 bp
ATGGAAGCCATGGACTTGGATCAGTTGGAGGCAAAACAGTCCAATCCAAACTCATTCAAGCGTTTCGGCCTCAAAACCTCTATCCCAACCAACTTCGGAGACGATTACGTTTTCCAAATTGTGCCCAAGGATGATTGGACAGCAATGGCGGTGTCACTGTCAACGAACGCAGTGAAGCTCTACTCACCGGTGACTGGTCAGTACTATGGAGAGTGCAAAGGCCACTCTGCAACTATCAATCAAATTTCATTTGCAGACCCATCATCCCCACATGTTTTGCACTCTTGCTCTTCCGACGGAACCATTAGACTTTGGGACTCCCGCACATTCCAACAGGTGTCATCTTTTCACTCTGGTTCGAGTGAGGAGATTTTCAGCTTTTCTTTTGGTGGATCATCTAATAATCTTCTGGCCGCAGGATGTAATTCTCAGATACTAATGTGGGATTGGAGGAACGACAAACAAGTAGCATGCTTAGAGGACTCTCATGTGGAAGATGTTACTCAGGTTCACTTCATTCCTGACCATCAAAGCAAGCTCCTTTCTGCTTCTGTAGATGGATTGATATGTATATTTGATACAGATGGAGATATCAACGAAGATGATCATCTTGAGTCAGTGCTAAATGTGGGCACTTCCATTGGGAAGGTGGGGTTTTTTGGTGAGACATATCAAAAGCTTTGGTGTTTGACCCATATTGAAACCTTAAGTATCTGGGACTGGAAGGATGCAACTGAAACAAATTTCCAGGACGCTCGTTCGTTGGCTTCTAACAGTTGGACTCTAGGTGAAGTTGATTATTTTGTTGATTGCCACTACTCAAGAGAAGCAGAACGATTATGGCTTATTGGTGGCGCCAACACTGGCACTTTAGGTTACTTCCCTGTAACTTACACAGGAACGCGAGCCATAGGTTCCCCTGAAGCAATTATGGAAGGTGGCCATACGGGTGTTGTCCGAAGTGTGTTGCCTATGTCAAACATGCCAGGTCCCCAAGGCCAAAGCATTTTTGGATGGACTGGTGGTGAAGATGGCCATTTATGTTGCTGGTTATCAGATGGTTCTCTGGACACCATAAACCGATCATGGAGTTCAAGCGAACTGGTTTTGAGATCACCAAAGATCCGAAAGTCAAAAAGGCATAGTCCCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

384

Amino Acids

42.48

Weight (kDa)

4.93

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 34 - 243 3.1e-12 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 37 - 195 3.9e-10 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 47 - 195 3.4e-23 WDR5 beta-propeller domain
WDR55 PF24796 47 - 243 9.8e-10 WDR55
Beta-prop_WDR3_1st PF25173 51 - 195 1.2e-16 WDR3 first beta-propeller domain
Beta-prop_WDR75_1st PF23869 52 - 107 6.2e-06 WD repeat-containing protein 75 first beta-propeller
Beta-prop_THOC3 PF25174 56 - 152 3.5e-11 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 56 - 150 7.5e-08 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 57 - 194 2.8e-12 Prp19 WD40 domain
WD40 PF00400 69 - 106 4e-06 WD domain, G-beta repeat
WD40_Gbeta PF25391 73 - 197 1.7e-07 G protein beta WD-40 repeat protein
Beta-prop_EML_2 PF23414 87 - 203 6.6e-08 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd PF23393 93 - 195 4.2e-06 WDR90/POC16, second beta-propeller
Beta-prop_EML PF23409 98 - 182 1e-06 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_EIPR1 PF23609 108 - 194 3e-06 EIPR1 beta-propeller
Beta-prop_THOC3 PF25174 124 - 195 7.9e-06 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 854
AccII CGCG 1 cut(s) 904
AciI CCGC 3 cut(s) 149, 322, 414
AclWI GGATC 3 cut(s) 27, 400, 1117
AcoI YGGCCR 3 cut(s) 411, 940, 1033
AcsI RAATTY 2 cut(s) 243, 742
AcuI CTGAAG 1 cut(s) 942
AcyI GRCGYC 1 cut(s) 855
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 194
AflII CTTAAG 1 cut(s) 706
AflIII ACRYGT 1 cut(s) 271
AgeI ACCGGT 1 cut(s) 187
AgsI TTSAA 3 cut(s) 58, 701, 1095
AjnI CCWGG 2 cut(s) 747, 985
AluBI AGCT 4 cut(s) 178, 378, 538, 679
AluI AGCT 4 cut(s) 178, 378, 538, 679
Alw26I GTCTC 2 cut(s) 93, 659
AlwI GGATC 3 cut(s) 27, 400, 1117
AoxI GGCC 6 cut(s) 67, 220, 411, 940, 997, 1033
ApoI RAATTY 2 cut(s) 243, 742
AsiGI ACCGGT 1 cut(s) 187
AspLEI GCGC 1 cut(s) 857
AspS9I GGNCC 1 cut(s) 989
AsuHPI GGTGA 6 cut(s) 177, 202, 674, 800, 1037, 1107
AvaII GGWCC 1 cut(s) 989
BaeGI GKGCMC 2 cut(s) 126, 635
BaeI ACNNNNGTAYC 2 cut(s) 425, 458
BalI TGGCCA 2 cut(s) 942, 1035
BanI GGYRCC 1 cut(s) 854
BccI CCATC 7 cut(s) 268, 534, 551, 578, 1008, 1025, 1052
BciT130I CCWGG 2 cut(s) 749, 987
BclI TGATCA 1 cut(s) 604
BcoDI GTCTC 2 cut(s) 93, 659
BfaI CTAG 2 cut(s) 785, 1153
BfmI CTRYAG 1 cut(s) 552
BfoI RGCGCY 1 cut(s) 858
BfrI CTTAAG 1 cut(s) 706
BisI GCNGC 1 cut(s) 414
BlsI GCNGC 1 cut(s) 415
BmcAI AGTACT 1 cut(s) 203
Bme1390I CCNGG 2 cut(s) 749, 987
Bme18I GGWCC 1 cut(s) 989
BmgT120I GGNCC 1 cut(s) 989
BmiI GGNNCC 4 cut(s) 301, 856, 916, 991
BmrFI CCNGG 2 cut(s) 749, 987
BmsI GCATC 1 cut(s) 718
BpuEI CTTGAG 2 cut(s) 632, 805
BsaBI GATNNNNATC 1 cut(s) 606
BsaHI GRCGYC 1 cut(s) 855
BsaJI CCNNGG 3 cut(s) 9, 126, 994
BsaWI WCCGGW 1 cut(s) 187
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse118I RCCGGY 1 cut(s) 187
Bse1I ACTGG 5 cut(s) 199, 725, 868, 1024, 1107
Bse3DI GCAATG 1 cut(s) 150
Bse8I GATNNNNATC 1 cut(s) 606
BseBI CCWGG 2 cut(s) 749, 987
BseDI CCNNGG 3 cut(s) 9, 126, 994
BseGI GGATG 5 cut(s) 136, 263, 425, 733, 1019
BseJI GATNNNNATC 1 cut(s) 606
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 2 cut(s) 443, 518
BseNI ACTGG 5 cut(s) 199, 725, 868, 1024, 1107
BseRI GAGGAG 1 cut(s) 380
BseSI GKGCMC 2 cut(s) 126, 635
Bsh1236I CGCG 1 cut(s) 904
BshFI GGCC 6 cut(s) 69, 222, 413, 942, 999, 1035
BshNI GGYRCC 1 cut(s) 854
BshTI ACCGGT 1 cut(s) 187
BsiSI CCGG 1 cut(s) 188
BslFI GGGAC 4 cut(s) 329, 731, 975, 1131
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 2 cut(s) 93, 659
BsmBI CGTCTC 1 cut(s) 93
BsmFI GGGAC 4 cut(s) 329, 731, 975, 1131
BsnI GGCC 6 cut(s) 69, 222, 413, 942, 999, 1035
Bsp1286I GDGCHC 2 cut(s) 126, 635
Bsp143I GATC 6 cut(s) 19, 392, 604, 1082, 1112, 1122
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 3 cut(s) 149, 322, 414
BspANI GGCC 6 cut(s) 69, 222, 413, 942, 999, 1035
BspCNI CTCAG 2 cut(s) 442, 517
BspFNI CGCG 1 cut(s) 904
BspLI GGNNCC 4 cut(s) 301, 856, 916, 991
BspPI GGATC 3 cut(s) 27, 400, 1117
BspQI GCTCTTC 1 cut(s) 295
BspT107I GGYRCC 1 cut(s) 854
BspTI CTTAAG 1 cut(s) 706
BsrDI GCAATG 1 cut(s) 150
BsrFI RCCGGY 1 cut(s) 187
BsrI ACTGG 5 cut(s) 199, 725, 868, 1024, 1107
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 3 cut(s) 9, 126, 994
BssMI GATC 6 cut(s) 19, 392, 604, 1082, 1112, 1122
BssNI GRCGYC 1 cut(s) 855
BssT1I CCWWGG 3 cut(s) 9, 126, 994
Bst2UI CCWGG 2 cut(s) 749, 987
Bst4CI ACNGT 3 cut(s) 39, 159, 776
Bst6I CTCTTC 1 cut(s) 295
BstACI GRCGYC 1 cut(s) 855
BstAFI CTTAAG 1 cut(s) 706
BstC8I GCNNGC 3 cut(s) 472, 536, 906
BstDEI CTNAG 3 cut(s) 429, 475, 504
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 5 cut(s) 136, 263, 425, 733, 1019
BstFNI CGCG 1 cut(s) 904
BstH2I RGCGCY 1 cut(s) 858
BstHHI GCGC 1 cut(s) 857
BstKTI GATC 6 cut(s) 22, 395, 607, 1085, 1115, 1125
BstMAI GTCTC 2 cut(s) 93, 659
BstMBI GATC 6 cut(s) 19, 392, 604, 1082, 1112, 1122
BstNI CCWGG 2 cut(s) 749, 987
BstNSI RCATGY 3 cut(s) 275, 474, 985
BstSCI CCNGG 2 cut(s) 747, 985
BstSFI CTRYAG 1 cut(s) 552
BstSLI GKGCMC 2 cut(s) 126, 635
BstUI CGCG 1 cut(s) 904
BstX2I RGATCY 1 cut(s) 1122
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 1 cut(s) 1122
BsuRI GGCC 6 cut(s) 69, 222, 413, 942, 999, 1035
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 5 cut(s) 136, 263, 425, 733, 1019
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 4 cut(s) 155, 177, 624, 861
Cac8I GCNNGC 3 cut(s) 472, 536, 906
CfoI GCGC 1 cut(s) 857
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 989
CseI GACGC 1 cut(s) 761
Csp6I GTAC 1 cut(s) 202
CspAI ACCGGT 1 cut(s) 187
CspCI CAANNNNNGTGG 2 cut(s) 258, 293
CviAII CATG 6 cut(s) 10, 272, 471, 488, 982, 1086
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 3 cut(s) 429, 475, 504
DinI GGCGCC 1 cut(s) 856
DpnI GATC 6 cut(s) 21, 394, 606, 1084, 1114, 1124
DpnII GATC 6 cut(s) 19, 392, 604, 1082, 1112, 1122
EaeI YGGCCR 3 cut(s) 411, 940, 1033
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Eco130I CCWWGG 3 cut(s) 9, 126, 994
Eco32I GATATC 1 cut(s) 592
Eco47I GGWCC 1 cut(s) 989
Eco57I CTGAAG 1 cut(s) 942
EcoO109I RGGNCCY 1 cut(s) 989
EcoRII CCWGG 2 cut(s) 747, 985
EcoRV GATATC 1 cut(s) 592
EcoT14I CCWWGG 3 cut(s) 9, 126, 994
EgeI GGCGCC 1 cut(s) 856
EheI GGCGCC 1 cut(s) 856
ErhI CCWWGG 3 cut(s) 9, 126, 994
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 6 cut(s) 13, 275, 474, 491, 985, 1089
FaqI GGGAC 4 cut(s) 329, 731, 975, 1131
FatI CATG 6 cut(s) 9, 271, 470, 487, 981, 1085
FauI CCCGC 1 cut(s) 329
FbaI TGATCA 1 cut(s) 604
Fnu4HI GCNGC 1 cut(s) 414
FokI GGATG 5 cut(s) 143, 250, 432, 740, 1026
Fsp4HI GCNGC 1 cut(s) 414
FspBI CTAG 2 cut(s) 785, 1153
GlaI GCGC 1 cut(s) 856
GluI GCNGC 1 cut(s) 414
HaeII RGCGCY 1 cut(s) 858
HaeIII GGCC 6 cut(s) 69, 222, 413, 942, 999, 1035
HapII CCGG 1 cut(s) 188
HgaI GACGC 1 cut(s) 761
HhaI GCGC 1 cut(s) 857
Hin1I GRCGYC 1 cut(s) 855
Hin1II CATG 6 cut(s) 13, 275, 474, 491, 985, 1089
Hin6I GCGC 1 cut(s) 855
HinP1I GCGC 1 cut(s) 855
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 4 cut(s) 317, 482, 614, 781
HpaII CCGG 1 cut(s) 188
HphI GGTGA 6 cut(s) 177, 202, 674, 800, 1037, 1107
Hpy166II GTNNAC 2 cut(s) 162, 511
Hpy188I TCNGA 6 cut(s) 98, 295, 432, 959, 1057, 1127
Hpy188III TCNNGA 4 cut(s) 521, 611, 822, 1067
Hpy8I GTNNAC 2 cut(s) 162, 511
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 3 cut(s) 640, 718, 929
HpyCH4III ACNGT 3 cut(s) 39, 159, 776
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 5 cut(s) 216, 230, 254, 280, 731
HpyF3I CTNAG 3 cut(s) 429, 475, 504
HpySE526I ACGT 1 cut(s) 108
Hsp92I GRCGYC 1 cut(s) 855
Hsp92II CATG 6 cut(s) 13, 275, 474, 491, 985, 1089
HspAI GCGC 1 cut(s) 855
KasI GGCGCC 1 cut(s) 854
Ksp22I TGATCA 1 cut(s) 604
Kzo9I GATC 6 cut(s) 19, 392, 604, 1082, 1112, 1122
LguI GCTCTTC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 543
LweI GCATC 1 cut(s) 718
MaeI CTAG 2 cut(s) 785, 1153
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 5 cut(s) 153, 190, 499, 875, 886
MalI GATC 6 cut(s) 21, 394, 606, 1084, 1114, 1124
MboI GATC 6 cut(s) 19, 392, 604, 1082, 1112, 1122
MboII GAAGA 5 cut(s) 282, 398, 506, 611, 1040
MflI RGATCY 1 cut(s) 1122
MhlI GDGCHC 2 cut(s) 126, 635
MlsI TGGCCA 2 cut(s) 942, 1035
MluCI AATT 5 cut(s) 117, 243, 424, 742, 927
MluNI TGGCCA 2 cut(s) 942, 1035
Mly113I GGCGCC 1 cut(s) 855
MlyI GAGTC 4 cut(s) 311, 476, 623, 775
MmeI TCCRAC 4 cut(s) 6, 318, 355, 758
MnlI CCTC 6 cut(s) 22, 80, 88, 358, 444, 472
Mox20I TGGCCA 2 cut(s) 942, 1035
MscI TGGCCA 2 cut(s) 942, 1035
MseI TTAA 1 cut(s) 707
MslI CAYNNNNRTG 1 cut(s) 948
Msp20I TGGCCA 2 cut(s) 942, 1035
MspCI CTTAAG 1 cut(s) 706
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 2 cut(s) 749, 987
MvaI CCWGG 2 cut(s) 749, 987
MvnI CGCG 1 cut(s) 904
NarI GGCGCC 1 cut(s) 855
NcoI CCATGG 1 cut(s) 9
NdeII GATC 6 cut(s) 19, 392, 604, 1082, 1112, 1122
NlaIII CATG 6 cut(s) 13, 275, 474, 491, 985, 1089
NlaIV GGNNCC 4 cut(s) 301, 856, 916, 991
NmuCI GTSAC 2 cut(s) 153, 190
NspI RCATGY 3 cut(s) 275, 474, 985
PaeI GCATGC 1 cut(s) 474
PciI ACATGT 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 295
PfoI TCCNGGA 1 cut(s) 747
PinAI ACCGGT 1 cut(s) 187
PkrI GCNGC 1 cut(s) 415
PleI GAGTC 4 cut(s) 311, 476, 622, 775
PluTI GGCGCC 1 cut(s) 858
PpsI GAGTC 4 cut(s) 311, 476, 622, 775
PpuMI RGGWCCY 1 cut(s) 989
PscI ACATGT 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 989
Psp6I CCWGG 2 cut(s) 747, 985
PspGI CCWGG 2 cut(s) 747, 985
PspN4I GGNNCC 4 cut(s) 301, 856, 916, 991
PspPI GGNCC 1 cut(s) 989
PspPPI RGGWCCY 1 cut(s) 989
PsuI RGATCY 1 cut(s) 1122
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 948
SapI GCTCTTC 1 cut(s) 295
SaqAI TTAA 1 cut(s) 707
SatI GCNGC 1 cut(s) 414
Sau3AI GATC 6 cut(s) 19, 392, 604, 1082, 1112, 1122
Sau96I GGNCC 1 cut(s) 989
ScaI AGTACT 1 cut(s) 203
SchI GAGTC 4 cut(s) 311, 476, 623, 775
ScrFI CCNGG 2 cut(s) 749, 987
SduI GDGCHC 2 cut(s) 126, 635
SfaNI GCATC 1 cut(s) 718
SfcI CTRYAG 1 cut(s) 552
SfoI GGCGCC 1 cut(s) 856
SgrAI CRCCGGYG 1 cut(s) 187
SinI GGWCC 1 cut(s) 989
SmiMI CAYNNNNRTG 1 cut(s) 948
SmlI CTYRAG 3 cut(s) 611, 706, 820
SmoI CTYRAG 3 cut(s) 611, 706, 820
SphI GCATGC 1 cut(s) 474
Sse9I AATT 5 cut(s) 117, 243, 424, 742, 927
SsiI CCGC 3 cut(s) 149, 322, 414
SspDI GGCGCC 1 cut(s) 854
SspMI CTAG 2 cut(s) 785, 1153
StyD4I CCNGG 2 cut(s) 747, 985
StyI CCWWGG 3 cut(s) 9, 126, 994
TaaI ACNGT 3 cut(s) 39, 159, 776
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 359
TasI AATT 5 cut(s) 117, 243, 424, 742, 927
TatI WGTACW 1 cut(s) 201
TauI GCSGC 1 cut(s) 416
Tru1I TTAA 1 cut(s) 707
Tru9I TTAA 1 cut(s) 707
TscAI CASTG 4 cut(s) 162, 177, 624, 868
TseFI GTSAC 2 cut(s) 153, 190
Tsp45I GTSAC 2 cut(s) 153, 190
TspDTI ATGAA 2 cut(s) 237, 505
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 4 cut(s) 162, 177, 624, 868
Vha464I CTTAAG 1 cut(s) 706
VpaK11BI GGWCC 1 cut(s) 989
XapI RAATTY 2 cut(s) 243, 742
XceI RCATGY 3 cut(s) 275, 474, 985
XcmI CCANNNNNNNNNTGG 2 cut(s) 646, 1007
XspI CTAG 2 cut(s) 785, 1153
ZrmI AGTACT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.