Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000905

Physical Location & Seq

Genomic Coordinates Forward (+)

6322193 .. 6325332

Gene Structure 3140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1091100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGACGGTCTTCGTCCCAGAAACAGAGAGATTTTCATCGGCTTTACGAAGGCCGAGACTGAAAAAATGGAGAGATTGACGAGGGAATTAGGAGAACAGGTGCTGGAACGAGAGTTCTGTCAAAGTACTGCAAAAAGTTTTAATCGCTCCGCCGGTCGTGCTGGGAAACCTATCGTAAAATGGACTGAGGTACAAAGTTGGTTCGAGAATAGGGTGAAAGAGTCATCAAACATATCCAGAAATCTCTCCGAGGAACAGGGACATTGCCCTTCAAATAAGGCATGCAAAAGTTCTCAAAAACCTAAAGAAGAAGAGATCCCAGACGTATCAGAGTTGGAATTTGAGGCAAGGTCGTCAAAAGATGGGGCATGTTTGTATGATGTTGAAAAGTTCCTTGCTCACAGATTCCCTAGTACGGGGGAAACTGAAGTTCGTGTCAAATTTGTTGGATTTGGAGCCGAAGAGGATGAGTGGGTTAATGTAAAAAAAGCTGTGAGGGAGCGCTCAGTACCACTGGAGCATTCAGAATGTCATACATTGAAGGTTGGAGATCATGTCCTCTGCTTCCTGGAGAGGAGAGATCAAGCAATCTACTACGATGCCCATATTACAGATATTCAAAGGAAAATGCACGATGTAAGGGGCTGCAGGTGTCTTTTCTCAATCCGCTATAATCATGACAACAGCGAGGAACGAGTTCATTTGAGGAGATTGTGTCGGCGGCCAAAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAWADEE

Protein Analysis

245

Amino Acids

28.53

Weight (kDa)

8.06

Isoelectric Point (pI)

65.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAWADEE	PF16719	111 - 239	5.4e-42	SAWADEE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15215 AT1G15215 AT1G15215 AT1G15215
fragaria_vesca	FvH4_1g07250 FvH4_1g07250 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_6g32282 FvH4_6g32283
malus_domestica	MD08G1111600.v1.1 MD09G1204600.v1.1 MD15G1091100.v1.1 MD17G1184800.v1.1
prunus_persica	Prupe.1G445500_v2.0.a1 Prupe.1G445500_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1
pyrus_communis	pycom08g09270 pycom09g12150 pycom15g08510 pycom17g19430
rosa_chinensis	RchiOBHm_Chr2g0140241 RchiOBHm_Chr4g0409031 RchiOBHm_Chr5g0076021 RchiOBHm_Chr5g0078201 RchiOBHm_Chr6g0306581
rosa_laevigata	RLG00000010783 RLG00000019858
rosa_multiflora	Rmu_sc0005446.1_g000009
rosa_roxburghii	Rroxscaffold_1G00035110 Rroxscaffold_2G00082850 Rroxscaffold_2G00104960 Rroxscaffold_3G00232630 Rroxscaffold_5G00355740 Rroxscaffold_5G00365450 Rroxscaffold_5G00380960 Rroxscaffold_7G00161650
rosa_rugosa	Rorug02G0361600 Rorug02G0361700 Rorug02G0361700 Rorug02G0361700 Rorug05G0290900 Rorug05G0291000 Rorug06G0350500 Rorug06G0350600
rosa_samantha	Rh2AG412500 Rh2BG422800 Rh2CG398700 Rh2CG405000 Rh2DG432100 Rh4CG272400 Rh5AG500700 Rh5CG321900 Rh6AG463000 Rh6BG437900 Rh6CG477200 Rh6DG463800
rosa_wichuraiana	Rw2G033810 Rw5G047830 Rw6G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	639
Acc36I	ACCTGC	1 cut(s)	639
AciI	CCGC	3 cut(s)	150, 667, 721
AclWI	GGATC	1 cut(s)	310
AcoI	YGGCCR	1 cut(s)	722
AcsI	RAATTY	2 cut(s)	338, 440
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	4 cut(s)	127, 192, 415, 510
AfeI	AGCGCT	1 cut(s)	503
AfiI	CCNNNNNNNGG	2 cut(s)	415, 416
AgsI	TTSAA	4 cut(s)	273, 386, 541, 620
AjnI	CCWGG	1 cut(s)	567
AloI	GAACNNNNNNTCC	2 cut(s)	98, 130
AluBI	AGCT	1 cut(s)	491
AluI	AGCT	1 cut(s)	491
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	310
AlwNI	CAGNNNCTG	1 cut(s)	103
Aor51HI	AGCGCT	1 cut(s)	503
AoxI	GGCC	2 cut(s)	51, 722
ApeKI	GCWGC	1 cut(s)	645
ApoI	RAATTY	2 cut(s)	338, 440
Asp700I	GAANNNNTTC	1 cut(s)	696
AspLEI	GCGC	1 cut(s)	504
AsuHPI	GGTGA	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	2
BbvI	GCAGC	1 cut(s)	632
BccI	CCATC	1 cut(s)	356
BciT130I	CCWGG	1 cut(s)	569
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	411
BfmI	CTRYAG	1 cut(s)	646
BfoI	RGCGCY	1 cut(s)	505
BfuAI	ACCTGC	1 cut(s)	639
BisI	GCNGC	2 cut(s)	646, 722
BlsI	GCNGC	2 cut(s)	647, 723
BmcAI	AGTACT	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	569
BmiI	GGNNCC	1 cut(s)	457
BmrFI	CCNGG	1 cut(s)	569
BmsI	GCATC	1 cut(s)	589
BpiI	GAAGAC	1 cut(s)	2
BpmI	CTGGAG	2 cut(s)	536, 590
BsaBI	GATNNNNATC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	249
BsaXI	ACNNNNNCTCC	6 cut(s)	84, 114, 540, 570, 700, 730
Bsc4I	CCNNNNNNNGG	2 cut(s)	415, 416
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	262
Bse8I	GATNNNNATC	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	472
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	2 cut(s)	415, 416
BseMI	GCAATG	1 cut(s)	262
BseMII	CTCAG	2 cut(s)	177, 519
BseNI	ACTGG	1 cut(s)	519
BseRI	GAGGAG	2 cut(s)	589, 721
BseXI	GCAGC	1 cut(s)	632
BseYI	CCCAGC	1 cut(s)	161
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	2 cut(s)	53, 724
BsiEI	CGRYCG	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	2 cut(s)	415, 416
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	273
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	2 cut(s)	53, 724
Bsp143I	GATC	3 cut(s)	315, 550, 580
BspACI	CCGC	3 cut(s)	150, 667, 721
BspANI	GGCC	2 cut(s)	53, 724
BspCNI	CTCAG	2 cut(s)	178, 518
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	1 cut(s)	457
BspMAI	CTGCAG	1 cut(s)	650
BspMI	ACCTGC	1 cut(s)	639
BspPI	GGATC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	262
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	519
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	3 cut(s)	315, 550, 580
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	2 cut(s)	306, 456
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	2 cut(s)	186, 505
BstF5I	GGATG	1 cut(s)	472
BstH2I	RGCGCY	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	3 cut(s)	318, 553, 583
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	3 cut(s)	315, 550, 580
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	569
BstNSI	RCATGY	2 cut(s)	285, 372
BstSCI	CCNGG	1 cut(s)	567
BstSFI	CTRYAG	1 cut(s)	646
BstV1I	GCAGC	1 cut(s)	632
BstV2I	GAAGAC	1 cut(s)	2
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
BsuRI	GGCC	2 cut(s)	53, 724
BtsCI	GGATG	1 cut(s)	472
BtsIMutI	CAGTG	1 cut(s)	512
BveI	ACCTGC	1 cut(s)	639
Cac8I	GCNNGC	1 cut(s)	283
CaiI	CAGNNNCTG	1 cut(s)	103
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	1 cut(s)	504
Cfr10I	RCCGGY	1 cut(s)	152
Csp6I	GTAC	4 cut(s)	126, 191, 414, 509
CviAII	CATG	4 cut(s)	282, 369, 554, 677
CviJI	RGCY	6 cut(s)	42, 53, 458, 491, 645, 724
CviKI_1	RGCY	6 cut(s)	42, 53, 458, 491, 645, 724
CviQI	GTAC	4 cut(s)	126, 191, 414, 509
DdeI	CTNAG	2 cut(s)	186, 505
DpnI	GATC	3 cut(s)	317, 552, 582
DpnII	GATC	3 cut(s)	315, 550, 580
EaeI	YGGCCR	1 cut(s)	722
Eam1104I	CTCTTC	2 cut(s)	306, 456
EarI	CTCTTC	2 cut(s)	306, 456
EciI	GGCGGA	1 cut(s)	139
Eco47III	AGCGCT	1 cut(s)	503
Eco57I	CTGAAG	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	567
FaeI	CATG	4 cut(s)	285, 372, 557, 680
FaiI	YATR	9 cut(s)	233, 283, 370, 378, 534, 555, 606, 672, 678
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	4 cut(s)	281, 368, 553, 676
Fnu4HI	GCNGC	2 cut(s)	646, 722
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	2 cut(s)	646, 722
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	2 cut(s)	646, 722
GsaI	CCCAGC	1 cut(s)	165
GsuI	CTGGAG	2 cut(s)	536, 590
HaeII	RGCGCY	1 cut(s)	505
HaeIII	GGCC	2 cut(s)	53, 724
HapII	CCGG	1 cut(s)	153
HhaI	GCGC	1 cut(s)	504
Hin1II	CATG	4 cut(s)	285, 372, 557, 680
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HinfI	GANTC	2 cut(s)	221, 405
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	226
Hpy188I	TCNGA	3 cut(s)	250, 331, 526
Hpy188III	TCNNGA	3 cut(s)	205, 237, 677
HpyAV	CCTTC	3 cut(s)	43, 279, 535
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	4 cut(s)	131, 285, 631, 648
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	2 cut(s)	186, 505
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	4 cut(s)	285, 372, 557, 680
HspAI	GCGC	1 cut(s)	502
Kzo9I	GATC	3 cut(s)	315, 550, 580
LmnI	GCTCC	4 cut(s)	152, 455, 499, 517
Lsp1109I	GCAGC	1 cut(s)	632
LweI	GCATC	1 cut(s)	589
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	324
MalI	GATC	3 cut(s)	317, 552, 582
MboI	GATC	3 cut(s)	315, 550, 580
MboII	GAAGA	3 cut(s)	320, 323, 473
MflI	RGATCY	1 cut(s)	315
MluCI	AATT	3 cut(s)	86, 338, 440
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	3 cut(s)	315, 427, 526
MroXI	GAANNNNTTC	1 cut(s)	696
MseI	TTAA	2 cut(s)	141, 477
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	569
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	1 cut(s)	569
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	3 cut(s)	315, 550, 580
NlaIII	CATG	4 cut(s)	285, 372, 557, 680
NlaIV	GGNNCC	1 cut(s)	457
NmeAIII	GCCGAG	1 cut(s)	79
NspI	RCATGY	2 cut(s)	285, 372
PaeI	GCATGC	1 cut(s)	285
PagI	TCATGA	1 cut(s)	676
PaqCI	CACCTGC	1 cut(s)	639
PctI	GAATGC	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	1 cut(s)	405
PfoI	TCCNGGA	1 cut(s)	567
PkrI	GCNGC	2 cut(s)	647, 723
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	567
PspFI	CCCAGC	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	1 cut(s)	457
PstI	CTGCAG	1 cut(s)	650
PstNI	CAGNNNCTG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	315
RsaI	GTAC	4 cut(s)	127, 192, 415, 510
RsaNI	GTAC	4 cut(s)	126, 191, 414, 509
SaqAI	TTAA	2 cut(s)	141, 477
SatI	GCNGC	2 cut(s)	646, 722
Sau3AI	GATC	3 cut(s)	315, 550, 580
ScaI	AGTACT	1 cut(s)	127
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	569
SetI	ASST	9 cut(s)	102, 172, 192, 304, 327, 353, 493, 546, 653
SfaNI	GCATC	1 cut(s)	589
SfcI	CTRYAG	1 cut(s)	646
SphI	GCATGC	1 cut(s)	285
Sse9I	AATT	3 cut(s)	86, 338, 440
SsiI	CCGC	3 cut(s)	150, 667, 721
SspMI	CTAG	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	567
TaaI	ACNGT	1 cut(s)	8
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	1 cut(s)	204
TasI	AATT	3 cut(s)	86, 338, 440
TatI	WGTACW	1 cut(s)	125
TauI	GCSGC	1 cut(s)	724
TfiI	GAWTC	1 cut(s)	405
Tru1I	TTAA	2 cut(s)	141, 477
Tru9I	TTAA	2 cut(s)	141, 477
TscAI	CASTG	1 cut(s)	519
TseI	GCWGC	1 cut(s)	645
TspDTI	ATGAA	2 cut(s)	25, 689
TspRI	CASTG	1 cut(s)	519
XapI	RAATTY	2 cut(s)	338, 440
XceI	RCATGY	2 cut(s)	285, 372
XmnI	GAANNNNTTC	1 cut(s)	696
XspI	CTAG	1 cut(s)	411
ZrmI	AGTACT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.