RchiOBHm_Chr5g0078201

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000905
Physical Location & Seq
Forward (+)
84115395 .. 84117073
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35274

Sequence Viewer

Length: 198 bp
ATGCTTTGCAACTCAAGTCAGGTTGATCTAGACAACATAGATGAGAAAGAATTCCTGGAGTTGCAGGACTTAGAATTTCTTGACTGCATTTTAGAGGAAGGTGACATGCTTTATATCCCACCAAAGTGGTGGCACTATGTGCGGTCTCTGACAACAAGTATGTCGGTTAGCTTTTGGTGCAGTGATTATGACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0007623 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008214 GO:0008276 GO:0008757 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010452 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016278 GO:0016279 GO:0016491 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032451 GO:0032452 GO:0034968 GO:0036211 GO:0042054 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0046975 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_8

Protein Analysis

65

Amino Acids

7.75

Weight (kDa)

4.05

Isoelectric Point (pI)

68.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_8 PF13621 4 - 59 3.3e-15 Cupin-like domain
JmjC_2 PF08007 12 - 58 3.9e-10 JmjC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 142
AcsI RAATTY 2 cut(s) 50, 74
AdeI CACNNNGTG 1 cut(s) 139
AjnI CCWGG 1 cut(s) 54
AleI CACNNNNGTG 1 cut(s) 124
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 150
ApoI RAATTY 2 cut(s) 50, 74
Asp700I GAANNNNTTC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 150
BseBI CCWGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 150
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 1 cut(s) 142
BspTNI GGTCTC 1 cut(s) 150
BssMI GATC 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 139
BstDEI CTNAG 1 cut(s) 70
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 2 cut(s) 139, 177
BstNI CCWGG 1 cut(s) 56
BstNSI RCATGY 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 54
BstXI CCANNNNNNTGG 2 cut(s) 126, 129
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 187
CviAII CATG 1 cut(s) 106
CviJI RGCY 1 cut(s) 171
CviKI_1 RGCY 1 cut(s) 171
DdeI CTNAG 1 cut(s) 70
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
DraIII CACNNNGTG 1 cut(s) 139
Eco31I GGTCTC 1 cut(s) 150
EcoRI GAATTC 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 54
FaeI CATG 1 cut(s) 109
FaiI YATR 6 cut(s) 38, 107, 114, 138, 161, 189
FatI CATG 1 cut(s) 105
FspBI CTAG 1 cut(s) 29
GsuI CTGGAG 1 cut(s) 77
Hin1II CATG 1 cut(s) 109
HphI GGTGA 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 2 cut(s) 29, 80
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 4 cut(s) 9, 64, 87, 180
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 177
HpyF3I CTNAG 1 cut(s) 70
Hsp92II CATG 1 cut(s) 109
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 4 cut(s) 5, 41, 50, 68
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 101
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MluCI AATT 2 cut(s) 50, 74
MnlI CCTC 1 cut(s) 88
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 1 cut(s) 196
MslI CAYNNNNRTG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 139, 177
NdeII GATC 1 cut(s) 25
NlaIII CATG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 101
NspI RCATGY 1 cut(s) 109
OliI CACNNNNGTG 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 50
PfoI TCCNGGA 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
RseI CAYNNNNRTG 1 cut(s) 124
SaqAI TTAA 1 cut(s) 196
Sau3AI GATC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 56
SetI ASST 3 cut(s) 24, 103, 173
SgeI CNNG 9 cut(s) 27, 32, 41, 67, 68, 77, 92, 118, 168
SmiMI CAYNNNNRTG 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 2 cut(s) 50, 74
SsiI CCGC 1 cut(s) 142
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 194
TasI AATT 2 cut(s) 50, 74
Tru1I TTAA 1 cut(s) 196
Tru9I TTAA 1 cut(s) 196
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspRI CASTG 1 cut(s) 187
XapI RAATTY 2 cut(s) 50, 74
XbaI TCTAGA 1 cut(s) 28
XceI RCATGY 1 cut(s) 109
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.