Rroxscaffold_5G00380960

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000905
Physical Location & Seq
Reverse (-)
61044036 .. 61045179
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00380960.1

Sequence Viewer

Length: 762 bp
ATGGAGAGAACCTTGAATCTTCGGTCGGTTTCGGGAATTCAATTCCCGCCATGCCAAGAACCCTCAATCGGGTATTCCAGAGCATGGTCTCTCGCCGGCCTTTACACCACTCGCTCGACGAAGAAGCGAGCCTCGGAGGCCGAGGCTGCGAAAGCTCCGGCGTCCAAGAAGCGACGACCGTATGAGAAGAGATCACCAACTCGCCGGATCTCGTTTCGGTTCGAAATCGACCGAAGAAACGAGAAAATTGAGTCGCGAAGGAGAAGAAGAGGGACTCAAGACCGAGACAGTGTAAGCTCGATTGATCCGGTCAAATGTGCTCACTCTTCTTCTATGTATAAGCATCTTCATAAATTGGAGTCCCCGGATTCTCTCTCCCTTCGACCTTCGGACCGGCGAGATCCTTCTCGACCCGACCCGACTTTTTCTTCTTCCTCCGCCACCTCCGTCGGCAACCCGCCCTCCTTGTGCTCGGACCACGCCGCCCACCGCCCGGTGCCACCGCTTTGCTCCGCCGCCGCTCCTATAGCCGGATCGAAGCCCCTCCCCGAAGCTACAACTCGACCCGGCGGAAAACGAGTTTTCGGCGTTGTACGGGCCGATCCTTCCCACCATGGTGATCTCCTCCTCTTGCCGATCATCCCCATGCCCTCCTTGCTTGACGATTTTGAGTGTGGAGCGAGAGATCAAGGATTGAAGCCAACGGTTCGGTTGAATCGACCGGATCGGACGGCCGTGATTAATCCAAACTTCAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

253

Amino Acids

27.99

Weight (kDa)

10.36

Isoelectric Point (pI)

72.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 496
AccB7I CCANNNNNTGG 1 cut(s) 84
AccBSI CCGCTC 1 cut(s) 521
AccII CGCG 1 cut(s) 256
AclWI GGATC 6 cut(s) 215, 299, 395, 541, 596, 732
AcoI YGGCCR 1 cut(s) 732
AcsI RAATTY 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 161
AfaI GTAC 1 cut(s) 594
AfiI CCNNNNNNNGG 5 cut(s) 68, 69, 84, 493, 530
AgsI TTSAA 5 cut(s) 16, 41, 697, 715, 754
AleI CACNNNNGTG 1 cut(s) 615
AluBI AGCT 3 cut(s) 155, 297, 554
AluI AGCT 3 cut(s) 155, 297, 554
Alw21I GWGCWC 2 cut(s) 322, 473
Alw26I GTCTC 2 cut(s) 93, 279
AlwI GGATC 6 cut(s) 215, 299, 395, 541, 596, 732
AoxI GGCC 4 cut(s) 97, 138, 597, 732
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 36
AseI ATTAAT 1 cut(s) 741
AspS9I GGNCC 3 cut(s) 391, 475, 597
AsuC2I CCSGG 3 cut(s) 365, 494, 567
AsuHPI GGTGA 2 cut(s) 186, 629
AsuII TTCGAA 1 cut(s) 222
AvaII GGWCC 2 cut(s) 391, 475
BanI GGYRCC 1 cut(s) 496
Bbv12I GWGCWC 2 cut(s) 322, 473
BbvI GCAGC 1 cut(s) 133
BceAI ACGGC 2 cut(s) 719, 747
BcnI CCSGG 3 cut(s) 365, 494, 567
BcoDI GTCTC 2 cut(s) 93, 279
BfmI CTRYAG 1 cut(s) 525
BglI GCCNNNNNGGC 1 cut(s) 137
BisI GCNGC 4 cut(s) 147, 483, 516, 519
BlsI GCNGC 4 cut(s) 148, 484, 517, 520
Bme1390I CCNGG 3 cut(s) 365, 494, 567
Bme18I GGWCC 2 cut(s) 391, 475
BmgT120I GGNCC 3 cut(s) 391, 475, 597
BmiI GGNNCC 1 cut(s) 498
BmrFI CCNGG 3 cut(s) 365, 494, 567
BmsI GCATC 1 cut(s) 352
Bpu14I TTCGAA 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 261
BpuMI CCSGG 3 cut(s) 365, 494, 567
BsaHI GRCGYC 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 93
BsaJI CCNNGG 4 cut(s) 132, 141, 363, 613
BsaWI WCCGGW 2 cut(s) 307, 721
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 5 cut(s) 68, 69, 84, 493, 530
Bse118I RCCGGY 2 cut(s) 95, 393
BseDI CCNNGG 4 cut(s) 132, 141, 363, 613
BseGI GGATG 1 cut(s) 639
BseLI CCNNNNNNNGG 5 cut(s) 68, 69, 84, 493, 530
BseRI GAGGAG 2 cut(s) 614, 617
BseX3I CGGCCG 1 cut(s) 732
BseXI GCAGC 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 256
Bsh1285I CGRYCG 5 cut(s) 26, 179, 232, 722, 735
BshFI GGCC 4 cut(s) 99, 140, 599, 734
BshNI GGYRCC 1 cut(s) 496
BsiEI CGRYCG 5 cut(s) 26, 179, 232, 722, 735
BsiHKAI GWGCWC 2 cut(s) 322, 473
BslFI GGGAC 2 cut(s) 286, 346
BslI CCNNNNNNNGG 5 cut(s) 68, 69, 84, 493, 530
BsmAI GTCTC 2 cut(s) 93, 279
BsmFI GGGAC 2 cut(s) 286, 346
BsnI GGCC 4 cut(s) 99, 140, 599, 734
Bso31I GGTCTC 1 cut(s) 93
Bsp119I TTCGAA 1 cut(s) 222
Bsp1286I GDGCHC 2 cut(s) 322, 473
Bsp19I CCATGG 1 cut(s) 613
Bsp68I TCGCGA 1 cut(s) 256
BspANI GGCC 4 cut(s) 99, 140, 599, 734
BspFNI CGCG 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 498
BspPI GGATC 6 cut(s) 215, 299, 395, 541, 596, 732
BspT104I TTCGAA 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 496
BspTNI GGTCTC 1 cut(s) 93
BsrBI CCGCTC 1 cut(s) 521
BsrFI RCCGGY 2 cut(s) 95, 393
BssAI RCCGGY 2 cut(s) 95, 393
BssECI CCNNGG 4 cut(s) 132, 141, 363, 613
BssNI GRCGYC 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 613
Bst4CI ACNGT 3 cut(s) 180, 290, 706
Bst6I CTCTTC 3 cut(s) 182, 262, 331
BstACI GRCGYC 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 97, 129
BstDSI CCRYGG 1 cut(s) 613
BstF5I GGATG 1 cut(s) 639
BstFNI CGCG 1 cut(s) 256
BstMAI GTCTC 2 cut(s) 93, 279
BstMCI CGRYCG 5 cut(s) 26, 179, 232, 722, 735
BstMWI GCNNNNNNNGC 5 cut(s) 137, 146, 152, 527, 655
BstSCI CCNGG 3 cut(s) 363, 492, 565
BstSFI CTRYAG 1 cut(s) 525
BstUI CGCG 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 133
BstX2I RGATCY 2 cut(s) 207, 400
BstYI RGATCY 2 cut(s) 207, 400
BstZI CGGCCG 1 cut(s) 732
BsuRI GGCC 4 cut(s) 99, 140, 599, 734
BtgI CCRYGG 1 cut(s) 613
BtsCI GGATG 1 cut(s) 639
BtsIMutI CAGTG 1 cut(s) 295
BtuMI TCGCGA 1 cut(s) 256
Cac8I GCNNGC 2 cut(s) 97, 129
Cfr10I RCCGGY 2 cut(s) 95, 393
Cfr13I GGNCC 3 cut(s) 391, 475, 597
CpoI CGGWCCG 1 cut(s) 391
CseI GACGC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 593
CspI CGGWCCG 1 cut(s) 391
CviAII CATG 4 cut(s) 51, 84, 614, 646
CviQI GTAC 1 cut(s) 593
EaeI YGGCCR 1 cut(s) 732
EagI CGGCCG 1 cut(s) 732
Eam1104I CTCTTC 3 cut(s) 182, 262, 331
EarI CTCTTC 3 cut(s) 182, 262, 331
EciI GGCGGA 3 cut(s) 427, 502, 585
EclXI CGGCCG 1 cut(s) 732
Eco130I CCWWGG 1 cut(s) 613
Eco31I GGTCTC 1 cut(s) 93
Eco47I GGWCC 2 cut(s) 391, 475
Eco52I CGGCCG 1 cut(s) 732
EcoRI GAATTC 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 613
ErhI CCWWGG 1 cut(s) 613
FaeI CATG 4 cut(s) 54, 87, 617, 649
FaiI YATR 9 cut(s) 52, 85, 183, 335, 339, 351, 527, 615, 647
FaqI GGGAC 2 cut(s) 286, 346
FatI CATG 4 cut(s) 50, 83, 613, 645
FauI CCCGC 2 cut(s) 54, 465
Fnu4HI GCNGC 4 cut(s) 147, 483, 516, 519
FokI GGATG 1 cut(s) 626
Fsp4HI GCNGC 4 cut(s) 147, 483, 516, 519
GluI GCNGC 4 cut(s) 147, 483, 516, 519
HaeIII GGCC 4 cut(s) 99, 140, 599, 734
HgaI GACGC 1 cut(s) 150
Hin1I GRCGYC 1 cut(s) 161
Hin1II CATG 4 cut(s) 54, 87, 617, 649
HinfI GANTC 6 cut(s) 16, 251, 274, 359, 368, 715
HphI GGTGA 2 cut(s) 186, 629
Hpy188I TCNGA 4 cut(s) 136, 391, 475, 729
Hpy188III TCNNGA 5 cut(s) 33, 78, 255, 278, 408
Hpy99I CGWCG 3 cut(s) 121, 177, 452
HpyAV CCTTC 5 cut(s) 252, 389, 396, 414, 615
HpyCH4III ACNGT 3 cut(s) 180, 290, 706
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 146, 152, 527, 655
Hsp92I GRCGYC 1 cut(s) 161
Hsp92II CATG 4 cut(s) 54, 87, 617, 649
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
LmnI GCTCC 4 cut(s) 160, 515, 526, 677
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 352
MbiI CCGCTC 1 cut(s) 521
MflI RGATCY 2 cut(s) 207, 400
MhlI GDGCHC 2 cut(s) 322, 473
MluCI AATT 4 cut(s) 36, 41, 246, 353
MlyI GAGTC 3 cut(s) 260, 268, 368
MroNI GCCGGC 1 cut(s) 95
MseI TTAA 1 cut(s) 741
MslI CAYNNNNRTG 2 cut(s) 615, 644
MspR9I CCNGG 3 cut(s) 365, 494, 567
MvnI CGCG 1 cut(s) 256
MwoI GCNNNNNNNGC 5 cut(s) 137, 146, 152, 527, 655
NaeI GCCGGC 1 cut(s) 97
NciI CCSGG 3 cut(s) 365, 494, 567
NcoI CCATGG 1 cut(s) 613
NgoMIV GCCGGC 1 cut(s) 95
NlaIII CATG 4 cut(s) 54, 87, 617, 649
NlaIV GGNNCC 1 cut(s) 498
NmeAIII GCCGAG 1 cut(s) 166
NruI TCGCGA 1 cut(s) 256
NspV TTCGAA 1 cut(s) 222
OliI CACNNNNGTG 1 cut(s) 615
PcsI WCGNNNNNNNCGW 1 cut(s) 715
PdiI GCCGGC 1 cut(s) 97
PfeI GAWTC 3 cut(s) 16, 368, 715
PflMI CCANNNNNTGG 1 cut(s) 84
PkrI GCNGC 4 cut(s) 148, 484, 517, 520
PleI GAGTC 3 cut(s) 259, 268, 367
PpsI GAGTC 3 cut(s) 259, 268, 367
PshBI ATTAAT 1 cut(s) 741
PspN4I GGNNCC 1 cut(s) 498
PspPI GGNCC 3 cut(s) 391, 475, 597
PsuI RGATCY 2 cut(s) 207, 400
RruI TCGCGA 1 cut(s) 256
RsaI GTAC 1 cut(s) 594
RsaNI GTAC 1 cut(s) 593
RseI CAYNNNNRTG 2 cut(s) 615, 644
Rsr2I CGGWCCG 1 cut(s) 391
RsrII CGGWCCG 1 cut(s) 391
SaqAI TTAA 1 cut(s) 741
SatI GCNGC 4 cut(s) 147, 483, 516, 519
Sau96I GGNCC 3 cut(s) 391, 475, 597
SchI GAGTC 3 cut(s) 260, 268, 368
ScrFI CCNGG 3 cut(s) 365, 494, 567
SduI GDGCHC 2 cut(s) 322, 473
SetI ASST 6 cut(s) 14, 157, 299, 388, 446, 556
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 525
SfuI TTCGAA 1 cut(s) 222
SinI GGWCC 2 cut(s) 391, 475
SmiMI CAYNNNNRTG 2 cut(s) 615, 644
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
Sse9I AATT 4 cut(s) 36, 41, 246, 353
StyD4I CCNGG 3 cut(s) 363, 492, 565
StyI CCWWGG 1 cut(s) 613
TaaI ACNGT 3 cut(s) 180, 290, 706
TaqI TCGA 9 cut(s) 116, 222, 228, 299, 382, 409, 536, 562, 718
TaqII GACCGA 3 cut(s) 12, 246, 297
TasI AATT 4 cut(s) 36, 41, 246, 353
TauI GCSGC 3 cut(s) 485, 518, 521
TfiI GAWTC 3 cut(s) 16, 368, 715
Tru1I TTAA 1 cut(s) 741
Tru9I TTAA 1 cut(s) 741
TscAI CASTG 1 cut(s) 295
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 338
TspGWI ACGGA 1 cut(s) 436
TspRI CASTG 1 cut(s) 295
Van91I CCANNNNNTGG 1 cut(s) 84
VpaK11BI GGWCC 2 cut(s) 391, 475
VspI ATTAAT 1 cut(s) 741
XapI RAATTY 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.