Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000905

Physical Location & Seq

Genomic Coordinates Reverse (-)

84766423 .. 84768492

Gene Structure 2070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG500700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGCTTTGCAACTCAAGTCAGGTTGATCTTGACAATGTAGATGAGAGAGAATTTCCGGAGGTGAAGGACTTACAATTTCTTGACTGCATATTAGAGGAAGGTGAGATGCTTTATATCCCACCAAAGTGGTGGCACTATGTGCGGTCTCTGACAACAAGTATGTCAGTTAGCTTTTGGTGGAGTGATTATGACAGTTCAGCTACGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0007623 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008214 GO:0008276 GO:0008757 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010452 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016278 GO:0016279 GO:0016491 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032451 GO:0032452 GO:0034968 GO:0036211 GO:0042054 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0046975 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

69

Amino Acids

8.23

Weight (kDa)

4.05

Isoelectric Point (pI)

60.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	4 - 62	2.3e-18	Cupin-like domain
JmjC_2	PF08007	12 - 58	6.5e-09	JmjC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15215 AT1G15215 AT1G15215 AT1G15215
fragaria_vesca	FvH4_1g07250 FvH4_1g07250 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_6g32282 FvH4_6g32283
malus_domestica	MD08G1111600.v1.1 MD09G1204600.v1.1 MD15G1091100.v1.1 MD17G1184800.v1.1
prunus_persica	Prupe.1G445500_v2.0.a1 Prupe.1G445500_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1
pyrus_communis	pycom08g09270 pycom09g12150 pycom15g08510 pycom17g19430
rosa_chinensis	RchiOBHm_Chr2g0140241 RchiOBHm_Chr4g0409031 RchiOBHm_Chr5g0076021 RchiOBHm_Chr5g0078201 RchiOBHm_Chr6g0306581
rosa_laevigata	RLG00000010783 RLG00000019858
rosa_multiflora	Rmu_sc0005446.1_g000009
rosa_roxburghii	Rroxscaffold_1G00035110 Rroxscaffold_2G00082850 Rroxscaffold_2G00104960 Rroxscaffold_3G00232630 Rroxscaffold_5G00355740 Rroxscaffold_5G00365450 Rroxscaffold_5G00380960 Rroxscaffold_7G00161650
rosa_rugosa	Rorug02G0361600 Rorug02G0361700 Rorug02G0361700 Rorug02G0361700 Rorug05G0290900 Rorug05G0291000 Rorug06G0350500 Rorug06G0350600
rosa_samantha	Rh2AG412500 Rh2BG422800 Rh2CG398700 Rh2CG405000 Rh2DG432100 Rh4CG272400 Rh5AG500700 Rh5CG321900 Rh6AG463000 Rh6BG437900 Rh6CG477200 Rh6DG463800
rosa_wichuraiana	Rw2G033810 Rw5G047830 Rw6G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	50
AdeI	CACNNNGTG	1 cut(s)	139
AleI	CACNNNNGTG	1 cut(s)	124
AluBI	AGCT	2 cut(s)	171, 200
AluI	AGCT	2 cut(s)	171, 200
Alw26I	GTCTC	1 cut(s)	150
Aor13HI	TCCGGA	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	73, 113
BcoDI	GTCTC	1 cut(s)	150
BmsI	GCATC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	55
BseAI	TCCGGA	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	150
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	1 cut(s)	142
BspEI	TCCGGA	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	150
BssMI	GATC	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstXI	CCANNNNNNTGG	2 cut(s)	126, 129
CviJI	RGCY	2 cut(s)	171, 200
CviKI_1	RGCY	2 cut(s)	171, 200
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
DraIII	CACNNNGTG	1 cut(s)	139
Eco31I	GGTCTC	1 cut(s)	150
FaiI	YATR	5 cut(s)	89, 114, 138, 161, 189
HapII	CCGG	1 cut(s)	56
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	2 cut(s)	73, 113
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	3 cut(s)	29, 56, 80
HpyAV	CCTTC	2 cut(s)	58, 92
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	2 cut(s)	9, 87
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpySE526I	ACGT	1 cut(s)	203
Kpn2I	TCCGGA	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	25
LpnPI	CCDG	2 cut(s)	5, 69
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	203
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MluCI	AATT	2 cut(s)	50, 74
MnlI	CCTC	2 cut(s)	52, 88
MroI	TCCGGA	1 cut(s)	55
MslI	CAYNNNNRTG	1 cut(s)	124
MspI	CCGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeII	GATC	1 cut(s)	25
OliI	CACNNNNGTG	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	124
Sau3AI	GATC	1 cut(s)	25
SetI	ASST	6 cut(s)	24, 63, 103, 173, 202, 206
SfaNI	GCATC	1 cut(s)	96
SgeI	CNNG	6 cut(s)	27, 32, 41, 68, 92, 168
SmiMI	CAYNNNNRTG	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	2 cut(s)	50, 74
SsiI	CCGC	1 cut(s)	142
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	206
TasI	AATT	2 cut(s)	50, 74
XapI	RAATTY	1 cut(s)	50
XcmI	CCANNNNNNNNNTGG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.