Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000905

Physical Location & Seq

Genomic Coordinates Forward (+)

5238044 .. 5240051

Gene Structure 2008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G15215.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCTGCTTCCGATGATTCCTCTCACTATTTCACCGAGTTTACCTTGTCTGAGATTGTAGACATGGAGAATCTGTATAAGGAGCTCGGTGACCAATCTCTCCACAAAGATTTCTGTCAAACTGTTGCCTCTACTTTTAGTTGTTCTGTGAATCGGAATGGCAAATCCTCTATAACCTGGAAACAGGTACAGATTTGGTTCCAGGAGAAGCTGAAGCATCAAAGCCAACCAAAATCCAAAACTTTGCCATCTCCCCCTTTGCAGATTCATGACTTATCTAATCCCAGTTCTTATGCTTCAAATGCCTCAAATGCTACCTTTGTTGGGAATTCTACCTTTGTTCAAACACGAAAAGGCAAGGCCTCTGATTTAGCTGATCTGGCTTTTGAGGCTAAATCAGCGCGGGACTACGCGTGGTATGACGTGTCTTCGTTCCTTACTTATAGAGTTCTTCGCACTGGTGAACTGGTAAGCTTTTTCTCTTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAWADEE

Protein Analysis

163

Amino Acids

18.36

Weight (kDa)

6.41

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAWADEE	PF16719	126 - 242	3.7e-40	SAWADEE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15215 AT1G15215 AT1G15215 AT1G15215
fragaria_vesca	FvH4_1g07250 FvH4_1g07250 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_6g32282 FvH4_6g32283
malus_domestica	MD08G1111600.v1.1 MD09G1204600.v1.1 MD15G1091100.v1.1 MD17G1184800.v1.1
prunus_persica	Prupe.1G445500_v2.0.a1 Prupe.1G445500_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1
pyrus_communis	pycom08g09270 pycom09g12150 pycom15g08510 pycom17g19430
rosa_chinensis	RchiOBHm_Chr2g0140241 RchiOBHm_Chr4g0409031 RchiOBHm_Chr5g0076021 RchiOBHm_Chr5g0078201 RchiOBHm_Chr6g0306581
rosa_laevigata	RLG00000010783 RLG00000019858
rosa_multiflora	Rmu_sc0005446.1_g000009
rosa_roxburghii	Rroxscaffold_1G00035110 Rroxscaffold_2G00082850 Rroxscaffold_2G00104960 Rroxscaffold_3G00232630 Rroxscaffold_5G00355740 Rroxscaffold_5G00365450 Rroxscaffold_5G00380960 Rroxscaffold_7G00161650
rosa_rugosa	Rorug02G0361600 Rorug02G0361700 Rorug02G0361700 Rorug02G0361700 Rorug05G0290900 Rorug05G0291000 Rorug06G0350500 Rorug06G0350600
rosa_samantha	Rh2AG412500 Rh2BG422800 Rh2CG398700 Rh2CG405000 Rh2DG432100 Rh4CG272400 Rh5AG500700 Rh5CG321900 Rh6AG463000 Rh6BG437900 Rh6CG477200 Rh6DG463800
rosa_wichuraiana	Rw2G033810 Rw5G047830 Rw6G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	2 cut(s)	403, 413
AciI	CCGC	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	233
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	324
AflIII	ACRYGT	2 cut(s)	411, 423
AgsI	TTSAA	2 cut(s)	300, 344
AjiI	CACGTC	1 cut(s)	424
AjnI	CCWGG	2 cut(s)	176, 201
AluBI	AGCT	4 cut(s)	85, 211, 374, 474
AluI	AGCT	4 cut(s)	85, 211, 374, 474
Alw21I	GWGCWC	1 cut(s)	87
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	328
AspLEI	GCGC	1 cut(s)	403
AsuHPI	GGTGA	3 cut(s)	25, 101, 473
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	87
BccI	CCATC	1 cut(s)	256
BciT130I	CCWGG	2 cut(s)	178, 203
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	178, 203
BmgBI	CACGTC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	2 cut(s)	178, 203
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	420
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse1I	ACTGG	3 cut(s)	285, 463, 471
BseBI	CCWGG	2 cut(s)	178, 203
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	3 cut(s)	285, 463, 471
Bsh1236I	CGCG	2 cut(s)	403, 413
BshFI	GGCC	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	376
BspACI	CCGC	1 cut(s)	403
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	2 cut(s)	403, 413
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	200
BsrI	ACTGG	3 cut(s)	285, 463, 471
BssMI	GATC	1 cut(s)	376
Bst2UI	CCWGG	2 cut(s)	178, 203
Bst4CI	ACNGT	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	51
BstEII	GGTNACC	1 cut(s)	89
BstFNI	CGCG	2 cut(s)	403, 413
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	1 cut(s)	379
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	5 cut(s)	302, 311, 380, 389, 398
BstNI	CCWGG	2 cut(s)	178, 203
BstPI	GGTNACC	1 cut(s)	89
BstSCI	CCNGG	2 cut(s)	176, 201
BstUI	CGCG	2 cut(s)	403, 413
BstV2I	GAAGAC	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	362
BtrI	CACGTC	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	456
CciI	TCATGA	1 cut(s)	268
CfoI	GCGC	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	2 cut(s)	64, 269
CviJI	RGCY	9 cut(s)	5, 85, 211, 225, 362, 374, 383, 392, 474
CviKI_1	RGCY	9 cut(s)	5, 85, 211, 225, 362, 374, 383, 392, 474
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
Ecl136II	GAGCTC	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	85
EcoO65I	GGTNACC	1 cut(s)	89
EcoRI	GAATTC	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	176, 201
EcoT38I	GRGCYC	1 cut(s)	87
FaeI	CATG	2 cut(s)	67, 272
FaiI	YATR	7 cut(s)	65, 78, 173, 270, 294, 420, 444
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	2 cut(s)	63, 268
FauI	CCCGC	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	6
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	362
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	2 cut(s)	67, 272
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HindIII	AAGCTT	1 cut(s)	472
HinfI	GANTC	4 cut(s)	17, 70, 151, 265
HphI	GGTGA	3 cut(s)	25, 101, 473
Hpy166II	GTNNAC	3 cut(s)	42, 61, 464
Hpy188I	TCNGA	4 cut(s)	13, 52, 156, 367
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	3 cut(s)	42, 61, 464
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	5 cut(s)	302, 311, 380, 389, 398
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	2 cut(s)	67, 272
HspAI	GCGC	1 cut(s)	401
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	9 cut(s)	163, 170, 188, 190, 215, 298, 365, 444, 452
LweI	GCATC	1 cut(s)	226
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	2 cut(s)	420, 443
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	1 cut(s)	328
MluI	ACGCGT	1 cut(s)	411
MnlI	CCTC	6 cut(s)	31, 139, 178, 316, 373, 382
MseI	TTAA	1 cut(s)	490
MspR9I	CCNGG	2 cut(s)	178, 203
MvaI	CCWGG	2 cut(s)	178, 203
MvnI	CGCG	2 cut(s)	403, 413
MwoI	GCNNNNNNNGC	5 cut(s)	302, 311, 380, 389, 398
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	2 cut(s)	67, 272
NlaIV	GGNNCC	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	89
PagI	TCATGA	1 cut(s)	268
PceI	AGGCCT	1 cut(s)	362
PfeI	GAWTC	4 cut(s)	17, 70, 151, 265
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	176, 201
PspEI	GGTNACC	1 cut(s)	89
PspGI	CCWGG	2 cut(s)	176, 201
PspN4I	GGNNCC	1 cut(s)	200
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	490
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	376
ScrFI	CCNGG	2 cut(s)	178, 203
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	1 cut(s)	226
Sse9I	AATT	1 cut(s)	328
SseBI	AGGCCT	1 cut(s)	362
SsiI	CCGC	1 cut(s)	403
SstI	GAGCTC	1 cut(s)	87
StuI	AGGCCT	1 cut(s)	362
StyD4I	CCNGG	2 cut(s)	176, 201
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	426
TasI	AATT	1 cut(s)	328
TfiI	GAWTC	4 cut(s)	17, 70, 151, 265
Tru1I	TTAA	1 cut(s)	490
Tru9I	TTAA	1 cut(s)	490
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	463
XapI	RAATTY	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.