Rh6BG437900

Protein SAWADEE HOMEODOMAIN HOMOLOG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000905
Physical Location & Seq
Forward (+)
65695279 .. 65698170
2892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG437900.1

Sequence Viewer

Length: 810 bp
ATGGACCATGGCCTTCGTCCCAGACAGAGGGAGTTCTTCACTGGCTTCACAAAGGGCGAGATGGAGAGAATGGACAAATTGGTGAGGGAATCAGGAGAAGCAGTGCTGGCCAAAGAATTTTGTCAAAATTTGGCGAAAAGTTTTAATCGCTCTGCTGGTCGTGCTGGAAAACCAATTGTCAAATGGATTCAGGTGCAAAATTGGTTCCAGGAAAGGATGCAAGAGTTACCTAACATATTAAAAGATCTCCAGGGAGTTTGCCCTTCCACTAAGGCACCTAAAAGCAAAGAAAAACCTAAAGCCCACTCCAAAGCAGAAGAAAAGATCCCAGAGTCAGAGTTGGAATTTGAGGCTAGGTCATCAAAGGACGGGGCATGGTATGATGTTGATATGTTCCTGTGTCACCGAGTTGCTAGTGCGGGAGAAACTGAAGTTCGTGTTAGATTTGTTGGGTTTGGAGCCGAAGAGGATGAGTGGGTTAATGTTAAAAAAGCAGTGCGAGAGCGTTCTGTACCCCTAGAGAATTCAGAATGTAGTTCATTGAAGGTTGGAGACCATGTCCTCTGCTTGCTGGAGAAGAGAGATCAAGCGATCTACTATGATGCTCATATTATAGAAATCCATCGAAGAATGCATGATATAAGGGGGTGTAGGTGTCTTTTCTTTATTCGGTATAATCATGACAACAGTGAGTTGTCTTATTGGGTTAAGGTCAGTTGGCTTCGATGTGATAATACTCATCTGTCTGCAGGAAAAAGTTCGGTTAAGGAGACTGTGTCGTCGTCCAATACGGTAGATGATGGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

269

Amino Acids

30.97

Weight (kDa)

7.61

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 113 - 229 8.5e-44 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 778
AccB1I GGYRCC 1 cut(s) 274
AciI CCGC 1 cut(s) 419
AclWI GGATC 1 cut(s) 319
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 4 cut(s) 116, 127, 344, 523
AcuI CTGAAG 1 cut(s) 450
AfaI GTAC 1 cut(s) 513
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 1 cut(s) 544
AjnI CCWGG 2 cut(s) 207, 249
Alw26I GTCTC 2 cut(s) 546, 764
AlwI GGATC 1 cut(s) 319
AoxI GGCC 2 cut(s) 10, 108
ApoI RAATTY 4 cut(s) 116, 127, 344, 523
Asp700I GAANNNNTTC 1 cut(s) 757
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 94, 395
AvaII GGWCC 1 cut(s) 4
BalI TGGCCA 1 cut(s) 110
BanI GGYRCC 1 cut(s) 274
BccI CCATC 3 cut(s) 55, 630, 794
BciT130I CCWGG 2 cut(s) 209, 251
BcoDI GTCTC 2 cut(s) 546, 764
BfaI CTAG 3 cut(s) 354, 414, 518
BfmI CTRYAG 1 cut(s) 747
BglII AGATCT 1 cut(s) 244
Bme1390I CCNGG 2 cut(s) 209, 251
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 206, 276, 460
BmrFI CCNGG 2 cut(s) 209, 251
BmsI GCATC 2 cut(s) 207, 592
BpmI CTGGAG 2 cut(s) 233, 593
BsaI GGTCTC 1 cut(s) 546
BsaJI CCNNGG 2 cut(s) 7, 250
BsaXI ACNNNNNCTCC 6 cut(s) 87, 117, 543, 573, 761, 791
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 46
BseBI CCWGG 2 cut(s) 209, 251
BseDI CCNNGG 2 cut(s) 7, 250
BseGI GGATG 2 cut(s) 222, 475
BseLI CCNNNNNNNGG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 46
BshFI GGCC 2 cut(s) 12, 110
BshNI GGYRCC 1 cut(s) 274
BslFI GGGAC 1 cut(s) 3
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 2 cut(s) 546, 764
BsmFI GGGAC 1 cut(s) 3
BsmI GAATGC 1 cut(s) 636
BsnI GGCC 2 cut(s) 12, 110
Bso31I GGTCTC 1 cut(s) 546
Bsp143I GATC 4 cut(s) 244, 324, 583, 591
Bsp19I CCATGG 1 cut(s) 7
BspACI CCGC 1 cut(s) 419
BspANI GGCC 2 cut(s) 12, 110
BspHI TCATGA 1 cut(s) 679
BspLI GGNNCC 3 cut(s) 206, 276, 460
BspMAI CTGCAG 1 cut(s) 751
BspPI GGATC 1 cut(s) 319
BspT107I GGYRCC 1 cut(s) 274
BspTNI GGTCTC 1 cut(s) 546
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 2 cut(s) 7, 250
BssMI GATC 4 cut(s) 244, 324, 583, 591
BssT1I CCWWGG 1 cut(s) 7
Bst2UI CCWGG 2 cut(s) 209, 251
Bst4CI ACNGT 3 cut(s) 689, 775, 793
Bst6I CTCTTC 2 cut(s) 459, 572
BstC8I GCNNGC 2 cut(s) 108, 569
BstDEI CTNAG 1 cut(s) 270
BstDSI CCRYGG 1 cut(s) 7
BstF5I GGATG 2 cut(s) 222, 475
BstKTI GATC 4 cut(s) 247, 327, 586, 594
BstMAI GTCTC 2 cut(s) 546, 764
BstMBI GATC 4 cut(s) 244, 324, 583, 591
BstMWI GCNNNNNNNGC 2 cut(s) 107, 161
BstNI CCWGG 2 cut(s) 209, 251
BstSCI CCNGG 2 cut(s) 207, 249
BstSFI CTRYAG 1 cut(s) 747
BstX2I RGATCY 2 cut(s) 244, 324
BstYI RGATCY 2 cut(s) 244, 324
BsuRI GGCC 2 cut(s) 12, 110
BtgI CCRYGG 1 cut(s) 7
BtsCI GGATG 2 cut(s) 222, 475
BtsI GCAGTG 2 cut(s) 108, 501
BtsIMutI CAGTG 4 cut(s) 39, 108, 501, 694
Cac8I GCNNGC 2 cut(s) 108, 569
CciI TCATGA 1 cut(s) 679
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 512
CviAII CATG 5 cut(s) 8, 375, 557, 635, 680
CviJI RGCY 7 cut(s) 12, 45, 110, 302, 353, 461, 721
CviKI_1 RGCY 7 cut(s) 12, 45, 110, 302, 353, 461, 721
CviQI GTAC 1 cut(s) 512
DdeI CTNAG 1 cut(s) 270
DpnI GATC 4 cut(s) 246, 326, 585, 593
DpnII GATC 4 cut(s) 244, 324, 583, 591
DrdI GACNNNNNNGTC 1 cut(s) 778
DseDI GACNNNNNNGTC 1 cut(s) 778
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 2 cut(s) 459, 572
EarI CTCTTC 2 cut(s) 459, 572
Eco130I CCWWGG 1 cut(s) 7
Eco31I GGTCTC 1 cut(s) 546
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 450
EcoRI GAATTC 1 cut(s) 523
EcoRII CCWGG 2 cut(s) 207, 249
EcoT14I CCWWGG 1 cut(s) 7
EcoT22I ATGCAT 1 cut(s) 636
ErhI CCWWGG 1 cut(s) 7
FaeI CATG 5 cut(s) 11, 378, 560, 638, 683
FaqI GGGAC 1 cut(s) 3
FatI CATG 5 cut(s) 7, 374, 556, 634, 679
FauI CCCGC 1 cut(s) 412
FokI GGATG 2 cut(s) 229, 482
FspBI CTAG 3 cut(s) 354, 414, 518
GsuI CTGGAG 2 cut(s) 233, 593
HaeIII GGCC 2 cut(s) 12, 110
Hin1II CATG 5 cut(s) 11, 378, 560, 638, 683
HinfI GANTC 3 cut(s) 89, 187, 332
HphI GGTGA 2 cut(s) 94, 395
Hpy188I TCNGA 2 cut(s) 337, 529
Hpy188III TCNNGA 2 cut(s) 93, 680
Hpy99I CGWCG 1 cut(s) 784
HpyAV CCTTC 3 cut(s) 23, 273, 538
HpyCH4III ACNGT 3 cut(s) 689, 775, 793
HpyCH4V TGCA 4 cut(s) 196, 220, 634, 749
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 161
HpyF3I CTNAG 1 cut(s) 270
Hsp92II CATG 5 cut(s) 11, 378, 560, 638, 683
Kzo9I GATC 4 cut(s) 244, 324, 583, 591
LmnI GCTCC 1 cut(s) 458
LweI GCATC 2 cut(s) 207, 592
MaeI CTAG 3 cut(s) 354, 414, 518
MaeIII GTNAC 2 cut(s) 225, 401
MalI GATC 4 cut(s) 246, 326, 585, 593
MboI GATC 4 cut(s) 244, 324, 583, 591
MboII GAAGA 5 cut(s) 28, 329, 476, 589, 639
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 2 cut(s) 244, 324
MlsI TGGCCA 1 cut(s) 110
MluCI AATT 7 cut(s) 77, 116, 127, 174, 199, 344, 523
MluNI TGGCCA 1 cut(s) 110
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 2 cut(s) 321, 529
MnlI CCTC 5 cut(s) 21, 78, 343, 460, 572
Mox20I TGGCCA 1 cut(s) 110
Mph1103I ATGCAT 1 cut(s) 636
MroXI GAANNNNTTC 1 cut(s) 757
MscI TGGCCA 1 cut(s) 110
MseI TTAA 6 cut(s) 144, 239, 480, 486, 708, 765
Msp20I TGGCCA 1 cut(s) 110
MspR9I CCNGG 2 cut(s) 209, 251
MunI CAATTG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 636
MvaI CCWGG 2 cut(s) 209, 251
MwoI GCNNNNNNNGC 2 cut(s) 107, 161
NcoI CCATGG 1 cut(s) 7
NdeII GATC 4 cut(s) 244, 324, 583, 591
NlaIII CATG 5 cut(s) 11, 378, 560, 638, 683
NlaIV GGNNCC 3 cut(s) 206, 276, 460
NmuCI GTSAC 1 cut(s) 401
NsiI ATGCAT 1 cut(s) 636
PagI TCATGA 1 cut(s) 679
PctI GAATGC 1 cut(s) 636
PdmI GAANNNNTTC 1 cut(s) 757
PfeI GAWTC 2 cut(s) 89, 187
PflFI GACNNNGTC 2 cut(s) 557, 775
PfoI TCCNGGA 1 cut(s) 207
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
Psp6I CCWGG 2 cut(s) 207, 249
PspGI CCWGG 2 cut(s) 207, 249
PspN4I GGNNCC 3 cut(s) 206, 276, 460
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 751
PsuI RGATCY 2 cut(s) 244, 324
PsyI GACNNNGTC 2 cut(s) 557, 775
RsaI GTAC 1 cut(s) 513
RsaNI GTAC 1 cut(s) 512
SaqAI TTAA 6 cut(s) 144, 239, 480, 486, 708, 765
Sau3AI GATC 4 cut(s) 244, 324, 583, 591
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 2 cut(s) 209, 251
SetI ASST 8 cut(s) 195, 232, 280, 298, 359, 549, 656, 714
SfaNI GCATC 2 cut(s) 207, 592
SfcI CTRYAG 1 cut(s) 747
SinI GGWCC 1 cut(s) 4
Sse9I AATT 7 cut(s) 77, 116, 127, 174, 199, 344, 523
SsiI CCGC 1 cut(s) 419
SspMI CTAG 3 cut(s) 354, 414, 518
StyD4I CCNGG 2 cut(s) 207, 249
StyI CCWWGG 1 cut(s) 7
TaaI ACNGT 3 cut(s) 689, 775, 793
TaqI TCGA 2 cut(s) 625, 724
TasI AATT 7 cut(s) 77, 116, 127, 174, 199, 344, 523
TfiI GAWTC 2 cut(s) 89, 187
Tru1I TTAA 6 cut(s) 144, 239, 480, 486, 708, 765
Tru9I TTAA 6 cut(s) 144, 239, 480, 486, 708, 765
TscAI CASTG 4 cut(s) 46, 108, 501, 694
TseFI GTSAC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 1 cut(s) 528
TspRI CASTG 4 cut(s) 46, 108, 501, 694
Tth111I GACNNNGTC 2 cut(s) 557, 775
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 4 cut(s) 116, 127, 344, 523
XcmI CCANNNNNNNNNTGG 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 757
XspI CTAG 3 cut(s) 354, 414, 518
Zsp2I ATGCAT 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.