Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000905

Physical Location & Seq

Genomic Coordinates Forward (+)

4336108 .. 4341332

Gene Structure 5225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G060300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGACATGGAACTTTTTCGTACAAGAAAAAGAGAACCAATGAATTCTCTATCTGTATTCACTCATTCTGAGATTATGGAAATGGAAAATTTAATTAAGCACGCAGGACAACAGTCGCTTAGTCAGGAGTTTTTCCAAGATCTTGCAACGAGTTTCAGTTGCACTCCAATCCGTGCTGGAAAACCTGATATAACTTGGGAACAGGTTCAAAGTTGGTTCCAGAACAAACAAAAAGAGTTGCAAGCCAATAGCAATTCCTCACCTACTGCGCTCGAGTTATTTGTTGATCTTTCAGATTCAAATGTTTCAAGCAATGCAACTGAAAACTCTCAGAAGCCAAAAGGTAAATGGAGCACAGAACTCCATGAGTTGGCATTTGAAGCACGATCAGCAAAAGACGATGCATGGTATGATGTTGCTTCATTCCTCTCTTACAGAGTTGTTAATTCAGGAGAACTTGAAGTTCGGGTGCGATATTCTGGCTTCGGTAGGGAGGATGATGAGTGGGTGAATGTGACAAGAGCAGTGCGTGAGCGGTCTATTCCTTTAGAAGCCTCTGAGTGTCATAAGGTGAAGGTTGGGGACCTAGTGCTAAGCTTCCAGGAAAGGGAACATCAAGCTGTCTACTGTGATGCCCATGTTGTGGATATCCAAAGGGGGCTACACGACGTAACAGGCTGCAAGTGCATCTTTGTTGTTCGATTTGACCATGATAACACCGAGGAAGAAATTCAGCTTAGGAGGTTATGTATCAGGCCTGCACATAACGCTTCAGCTGTTACTAATACCCAGCAACACGACCTATTTAGAAATAAAGACATGAAATTCTCTTTTCTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAWADEE

Protein Analysis

281

Amino Acids

32.32

Weight (kDa)

5.52

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15215 AT1G15215 AT1G15215 AT1G15215
fragaria_vesca	FvH4_1g07250 FvH4_1g07250 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_6g32282 FvH4_6g32283
malus_domestica	MD08G1111600.v1.1 MD09G1204600.v1.1 MD15G1091100.v1.1 MD17G1184800.v1.1
prunus_persica	Prupe.1G445500_v2.0.a1 Prupe.1G445500_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1
pyrus_communis	pycom08g09270 pycom09g12150 pycom15g08510 pycom17g19430
rosa_chinensis	RchiOBHm_Chr2g0140241 RchiOBHm_Chr4g0409031 RchiOBHm_Chr5g0076021 RchiOBHm_Chr5g0078201 RchiOBHm_Chr6g0306581
rosa_laevigata	RLG00000010783 RLG00000019858
rosa_multiflora	Rmu_sc0005446.1_g000009
rosa_roxburghii	Rroxscaffold_1G00035110 Rroxscaffold_2G00082850 Rroxscaffold_2G00104960 Rroxscaffold_3G00232630 Rroxscaffold_5G00355740 Rroxscaffold_5G00365450 Rroxscaffold_5G00380960 Rroxscaffold_7G00161650
rosa_rugosa	Rorug02G0361600 Rorug02G0361700 Rorug02G0361700 Rorug02G0361700 Rorug05G0290900 Rorug05G0291000 Rorug06G0350500 Rorug06G0350600
rosa_samantha	Rh2AG412500 Rh2BG422800 Rh2CG398700 Rh2CG405000 Rh2DG432100 Rh4CG272400 Rh5AG500700 Rh5CG321900 Rh6AG463000 Rh6BG437900 Rh6CG477200 Rh6DG463800
rosa_wichuraiana	Rw2G033810 Rw5G047830 Rw6G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	370, 643
AccBSI	CCGCTC	1 cut(s)	535
AccI	GTMKAC	1 cut(s)	624
AciI	CCGC	1 cut(s)	535
AcsI	RAATTY	4 cut(s)	43, 88, 729, 824
AcuI	CTGAAG	1 cut(s)	756
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	3 cut(s)	370, 607, 643
AgsI	TTSAA	5 cut(s)	209, 300, 309, 380, 461
AjnI	CCWGG	1 cut(s)	600
AluBI	AGCT	4 cut(s)	597, 620, 736, 776
AluI	AGCT	4 cut(s)	597, 620, 736, 776
Alw21I	GWGCWC	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	755
ApeKI	GCWGC	1 cut(s)	678
ApoI	RAATTY	4 cut(s)	43, 88, 729, 824
Asp700I	GAANNNNTTC	3 cut(s)	15, 204, 729
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	583
AsuHPI	GGTGA	3 cut(s)	252, 520, 583
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	583
Bbv12I	GWGCWC	1 cut(s)	356
BbvI	GCAGC	1 cut(s)	665
BciT130I	CCWGG	1 cut(s)	602
BfaI	CTAG	1 cut(s)	587
BglII	AGATCT	1 cut(s)	139
BisI	GCNGC	1 cut(s)	679
BlpI	GCTNAGC	1 cut(s)	593
BlsI	GCNGC	1 cut(s)	680
Bme1390I	CCNGG	1 cut(s)	602
Bme18I	GGWCC	1 cut(s)	583
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	583
BmiI	GGNNCC	2 cut(s)	218, 584
BmrFI	CCNGG	1 cut(s)	602
BmsI	GCATC	3 cut(s)	391, 622, 696
BoxI	GACNNNNGTC	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	737
Bpu1102I	GCTNAGC	1 cut(s)	593
BsaJI	CCNNGG	1 cut(s)	720
BsaXI	ACNNNNNCTCC	2 cut(s)	733, 763
Bsc4I	CCNNNNNNNGG	3 cut(s)	370, 607, 643
Bse3DI	GCAATG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	602
BseDI	CCNNGG	1 cut(s)	720
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	3 cut(s)	370, 607, 643
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	3 cut(s)	60, 344, 549
BseXI	GCAGC	1 cut(s)	665
BseYI	CCCAGC	1 cut(s)	789
BsgI	GTGCAG	1 cut(s)	744
BshFI	GGCC	1 cut(s)	757
BsiHKAI	GWGCWC	1 cut(s)	356
BsiHKCI	CYCGRG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	3 cut(s)	370, 607, 643
BsmFI	GGGAC	1 cut(s)	596
BsnI	GGCC	1 cut(s)	757
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp143I	GATC	3 cut(s)	139, 286, 386
Bsp1720I	GCTNAGC	1 cut(s)	593
BspACI	CCGC	1 cut(s)	535
BspANI	GGCC	1 cut(s)	757
BspCNI	CTCAG	3 cut(s)	61, 343, 550
BspLI	GGNNCC	2 cut(s)	218, 584
BsrBI	CCGCTC	1 cut(s)	535
BsrDI	GCAATG	1 cut(s)	319
BssECI	CCNNGG	1 cut(s)	720
BssMI	GATC	3 cut(s)	139, 286, 386
Bst2UI	CCWGG	1 cut(s)	602
Bst4CI	ACNGT	2 cut(s)	114, 629
BstC8I	GCNNGC	3 cut(s)	102, 243, 759
BstDEI	CTNAG	6 cut(s)	69, 119, 330, 558, 593, 737
BstF5I	GGATG	1 cut(s)	502
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	3 cut(s)	142, 289, 389
BstMBI	GATC	3 cut(s)	139, 286, 386
BstMWI	GCNNNNNNNGC	4 cut(s)	380, 389, 684, 767
BstNI	CCWGG	1 cut(s)	602
BstPAI	GACNNNNGTC	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	600
BstV1I	GCAGC	1 cut(s)	665
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	757
BtsCI	GGATG	1 cut(s)	502
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	1 cut(s)	531
Cac8I	GCNNGC	3 cut(s)	102, 243, 759
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	583
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	6 cut(s)	7, 365, 405, 638, 710, 820
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	6 cut(s)	69, 119, 330, 558, 593, 737
DpnI	GATC	3 cut(s)	141, 288, 388
DpnII	GATC	3 cut(s)	139, 286, 386
Eco147I	AGGCCT	1 cut(s)	757
Eco32I	GATATC	1 cut(s)	649
Eco47I	GGWCC	1 cut(s)	583
Eco57I	CTGAAG	1 cut(s)	756
Eco88I	CYCGRG	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	583
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	600
EcoRV	GATATC	1 cut(s)	649
EcoT22I	ATGCAT	1 cut(s)	406
FaeI	CATG	6 cut(s)	10, 368, 408, 641, 713, 823
FalI	AAGNNNNNCTT	2 cut(s)	674, 706
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	6 cut(s)	6, 364, 404, 637, 709, 819
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	1 cut(s)	679
FokI	GGATG	1 cut(s)	509
Fsp4HI	GCNGC	1 cut(s)	679
FspBI	CTAG	1 cut(s)	587
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	679
GsaI	CCCAGC	1 cut(s)	793
HaeIII	GGCC	1 cut(s)	757
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	6 cut(s)	10, 368, 408, 641, 713, 823
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	595
HinfI	GANTC	1 cut(s)	296
HphI	GGTGA	3 cut(s)	252, 520, 583
Hpy166II	GTNNAC	1 cut(s)	625
Hpy188I	TCNGA	4 cut(s)	70, 295, 333, 559
Hpy188III	TCNNGA	3 cut(s)	125, 220, 450
Hpy8I	GTNNAC	1 cut(s)	625
Hpy99I	CGWCG	1 cut(s)	671
HpyAV	CCTTC	1 cut(s)	568
HpyCH4III	ACNGT	2 cut(s)	114, 629
HpyCH4IV	ACGT	1 cut(s)	669
HpyCH4V	TGCA	8 cut(s)	146, 162, 241, 317, 404, 681, 687, 761
HpyF10VI	GCNNNNNNNGC	4 cut(s)	380, 389, 684, 767
HpyF3I	CTNAG	6 cut(s)	69, 119, 330, 558, 593, 737
HpySE526I	ACGT	1 cut(s)	669
Hsp92II	CATG	6 cut(s)	10, 368, 408, 641, 713, 823
HspAI	GCGC	1 cut(s)	269
Kzo9I	GATC	3 cut(s)	139, 286, 386
LmnI	GCTCC	1 cut(s)	351
Lsp1109I	GCAGC	1 cut(s)	665
LweI	GCATC	3 cut(s)	391, 622, 696
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	3 cut(s)	514, 670, 778
MalI	GATC	3 cut(s)	141, 288, 388
MbiI	CCGCTC	1 cut(s)	535
MboI	GATC	3 cut(s)	139, 286, 386
MboII	GAAGA	1 cut(s)	737
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	356
MluCI	AATT	7 cut(s)	43, 88, 93, 253, 445, 729, 824
MnlI	CCTC	6 cut(s)	268, 437, 487, 565, 715, 735
Mph1103I	ATGCAT	1 cut(s)	406
MroXI	GAANNNNTTC	3 cut(s)	15, 204, 729
MseI	TTAA	3 cut(s)	92, 96, 444
MspA1I	CMGCKG	1 cut(s)	776
MspR9I	CCNGG	1 cut(s)	602
MvaI	CCWGG	1 cut(s)	602
MwoI	GCNNNNNNNGC	4 cut(s)	380, 389, 684, 767
NdeII	GATC	3 cut(s)	139, 286, 386
NlaIII	CATG	6 cut(s)	10, 368, 408, 641, 713, 823
NlaIV	GGNNCC	2 cut(s)	218, 584
NmuCI	GTSAC	1 cut(s)	514
NsiI	ATGCAT	1 cut(s)	406
PacI	TTAATTAA	1 cut(s)	96
PaeR7I	CTCGAG	1 cut(s)	272
PceI	AGGCCT	1 cut(s)	757
PdmI	GAANNNNTTC	3 cut(s)	15, 204, 729
PfeI	GAWTC	1 cut(s)	296
PflMI	CCANNNNNTGG	2 cut(s)	370, 643
PfoI	TCCNGGA	1 cut(s)	600
PkrI	GCNGC	1 cut(s)	680
PpuMI	RGGWCCY	1 cut(s)	583
PshAI	GACNNNNGTC	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	583
Psp6I	CCWGG	1 cut(s)	600
PspFI	CCCAGC	1 cut(s)	789
PspGI	CCWGG	1 cut(s)	600
PspN4I	GGNNCC	2 cut(s)	218, 584
PspPI	GGNCC	1 cut(s)	583
PspPPI	RGGWCCY	1 cut(s)	583
PspXI	VCTCGAGB	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	92, 96, 444
SatI	GCNGC	1 cut(s)	679
Sau3AI	GATC	3 cut(s)	139, 286, 386
Sau96I	GGNCC	1 cut(s)	583
ScrFI	CCNGG	1 cut(s)	602
SduI	GDGCHC	1 cut(s)	356
SfaNI	GCATC	3 cut(s)	391, 622, 696
Sfr274I	CTCGAG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	583
SlaI	CTCGAG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	7 cut(s)	43, 88, 93, 253, 445, 729, 824
SseBI	AGGCCT	1 cut(s)	757
SsiI	CCGC	1 cut(s)	535
SspMI	CTAG	1 cut(s)	587
StuI	AGGCCT	1 cut(s)	757
StyD4I	CCNGG	1 cut(s)	600
TaaI	ACNGT	2 cut(s)	114, 629
TaiI	ACGT	1 cut(s)	672
TaqI	TCGA	2 cut(s)	273, 700
TasI	AATT	7 cut(s)	43, 88, 93, 253, 445, 729, 824
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	3 cut(s)	92, 96, 444
Tru9I	TTAA	3 cut(s)	92, 96, 444
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	1 cut(s)	678
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	3 cut(s)	56, 411, 836
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	531
Van91I	CCANNNNNTGG	2 cut(s)	370, 643
VpaK11BI	GGWCC	1 cut(s)	583
XapI	RAATTY	4 cut(s)	43, 88, 729, 824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	345
XhoI	CTCGAG	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	624
XmnI	GAANNNNTTC	3 cut(s)	15, 204, 729
XspI	CTAG	1 cut(s)	587
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.