Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000905

Physical Location & Seq

Genomic Coordinates Reverse (-)

3830635 .. 3834744

Gene Structure 4110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07250.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAAAGACTCAAACTTAGTATACAATCGTCGTCAGTCAGAGACAAAGGAGGAAAGAAAACCAATGGATTCTCTCTCTGTCTTCACCCATTCTGAGATTATGAAATTGGAGAATATATTCAAGGAGACACCACAACAAGCACTTACTCAGGGGTTTTTTCCAAAATCTTGCGATAGATTTCAGGTGAACTCCTTTTCAGTGATGCAAACAAACTGCCAACCAAGCCGTCTTGGAAAATCGGATATAACACAGCAACAGGTGGAAGGTTGGTTCCAGAGCAGACGAAAAGAGATTCAAGCCAAAGGCACTACTTCATCTGGTGCCTTTGATTGGGTTGTTGAATCCCATGAAGATCTTTCAGATTTGACTATGTTCAGCAATGAACCTGACAATTCTCAAAAAGATCCATGCATCACAGATCTTTCAGAATTGGCATTTGAAGCAAAATCATCAAAAGATGGTGCATGGTATGATGTTGCATCTTTCCTCACTTACAGAGTTGTCAGTTCAGGAGAACTAGAAGTTCGAGTTCGTTATGCTGGATTTGGTAGGGAGGAGGATGAATGGGTAAATGTGAGAAGAGCAGTGCGTGACAGATCTATTCCTTTAGAAGAGTCTGAGTGTCATAAGGTCAAGGTTGGGGATCTTGTCCTATGCTTCCAGGAACGAGAAGATGAAGCTGTCTACTTTGATGCCCTTGTTGTGGAAATCCAGAGGAACTTACACGACCAAACAGGCTGCAGGTGTATTTTTGTTGTTCGCTTTGACCATGATAAAAGCAAGGAACAAGTTCCGTTGGGAAGGATATGTTGCAGGCCTTCAGAATACACTTCTTCAGCCATTGTTAAATCCGATCAGGACATCAAACCTAAGCCGGAGAACAAACCTAAGCCAGAGATAAATAGAGATGAAGATATGAAGTTTTCTTTTCTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAWADEE

Protein Analysis

313

Amino Acids

36.1

Weight (kDa)

5.23

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAWADEE	PF16719	143 - 221	7.9e-26	SAWADEE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15215 AT1G15215 AT1G15215 AT1G15215
fragaria_vesca	FvH4_1g07250 FvH4_1g07250 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_6g32282 FvH4_6g32283
malus_domestica	MD08G1111600.v1.1 MD09G1204600.v1.1 MD15G1091100.v1.1 MD17G1184800.v1.1
prunus_persica	Prupe.1G445500_v2.0.a1 Prupe.1G445500_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1
pyrus_communis	pycom08g09270 pycom09g12150 pycom15g08510 pycom17g19430
rosa_chinensis	RchiOBHm_Chr2g0140241 RchiOBHm_Chr4g0409031 RchiOBHm_Chr5g0076021 RchiOBHm_Chr5g0078201 RchiOBHm_Chr6g0306581
rosa_laevigata	RLG00000010783 RLG00000019858
rosa_multiflora	Rmu_sc0005446.1_g000009
rosa_roxburghii	Rroxscaffold_1G00035110 Rroxscaffold_2G00082850 Rroxscaffold_2G00104960 Rroxscaffold_3G00232630 Rroxscaffold_5G00355740 Rroxscaffold_5G00365450 Rroxscaffold_5G00380960 Rroxscaffold_7G00161650
rosa_rugosa	Rorug02G0361600 Rorug02G0361700 Rorug02G0361700 Rorug02G0361700 Rorug05G0290900 Rorug05G0291000 Rorug06G0350500 Rorug06G0350600
rosa_samantha	Rh2AG412500 Rh2BG422800 Rh2CG398700 Rh2CG405000 Rh2DG432100 Rh4CG272400 Rh5AG500700 Rh5CG321900 Rh6AG463000 Rh6BG437900 Rh6CG477200 Rh6DG463800
rosa_wichuraiana	Rw2G033810 Rw5G047830 Rw6G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	732
Acc36I	ACCTGC	1 cut(s)	732
AccB1I	GGYRCC	1 cut(s)	320
AccI	GTMKAC	2 cut(s)	21, 684
AclWI	GGATC	2 cut(s)	398, 651
AcuI	CTGAAG	2 cut(s)	804, 819
AfiI	CCNNNNNNNGG	2 cut(s)	330, 703
AgsI	TTSAA	4 cut(s)	121, 296, 341, 440
AjnI	CCWGG	1 cut(s)	660
AloI	GAACNNNNNNTCC	2 cut(s)	254, 286
AluBI	AGCT	1 cut(s)	680
AluI	AGCT	1 cut(s)	680
Alw26I	GTCTC	2 cut(s)	35, 119
AlwI	GGATC	2 cut(s)	398, 651
AoxI	GGCC	1 cut(s)	815
ApeKI	GCWGC	1 cut(s)	738
Asp700I	GAANNNNTTC	2 cut(s)	116, 789
AsuHPI	GGTGA	2 cut(s)	76, 196
BanI	GGYRCC	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	725
BccI	CCATC	1 cut(s)	452
BceAI	ACGGC	1 cut(s)	210
BciT130I	CCWGG	1 cut(s)	662
BcoDI	GTCTC	2 cut(s)	35, 119
BfaI	CTAG	1 cut(s)	518
BfmI	CTRYAG	1 cut(s)	739
BfuAI	ACCTGC	1 cut(s)	732
BglII	AGATCT	3 cut(s)	352, 418, 596
BisI	GCNGC	1 cut(s)	739
BlsI	GCNGC	1 cut(s)	740
Bme1390I	CCNGG	1 cut(s)	662
BmiI	GGNNCC	2 cut(s)	272, 322
BmrFI	CCNGG	1 cut(s)	662
BmsI	GCATC	4 cut(s)	192, 420, 488, 682
BpiI	GAAGAC	1 cut(s)	73
Bpu10I	CCTNAGC	2 cut(s)	870, 888
Bsc4I	CCNNNNNNNGG	2 cut(s)	330, 703
Bse3DI	GCAATG	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	662
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	2 cut(s)	330, 703
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	3 cut(s)	84, 161, 609
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	1 cut(s)	725
BshFI	GGCC	1 cut(s)	817
BshNI	GGYRCC	1 cut(s)	320
BsiSI	CCGG	1 cut(s)	875
BslI	CCNNNNNNNGG	2 cut(s)	330, 703
BsmAI	GTCTC	2 cut(s)	35, 119
BsnI	GGCC	1 cut(s)	817
Bsp143I	GATC	6 cut(s)	352, 403, 418, 596, 643, 853
BspANI	GGCC	1 cut(s)	817
BspCNI	CTCAG	3 cut(s)	85, 160, 610
BspLI	GGNNCC	2 cut(s)	272, 322
BspMAI	CTGCAG	1 cut(s)	743
BspMI	ACCTGC	1 cut(s)	732
BspPI	GGATC	2 cut(s)	398, 651
BspQI	GCTCTTC	1 cut(s)	574
BspT107I	GGYRCC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	385
BssMI	GATC	6 cut(s)	352, 403, 418, 596, 643, 853
BssNAI	GTATAC	1 cut(s)	22
Bst1107I	GTATAC	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	662
Bst6I	CTCTTC	2 cut(s)	574, 606
BstC8I	GCNNGC	1 cut(s)	815
BstDEI	CTNAG	6 cut(s)	16, 93, 147, 618, 870, 888
BstF5I	GGATG	1 cut(s)	565
BstKTI	GATC	6 cut(s)	355, 406, 421, 599, 646, 856
BstMAI	GTCTC	2 cut(s)	35, 119
BstMBI	GATC	6 cut(s)	352, 403, 418, 596, 643, 853
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 440
BstNI	CCWGG	1 cut(s)	662
BstSCI	CCNGG	1 cut(s)	660
BstSFI	CTRYAG	1 cut(s)	739
BstV1I	GCAGC	1 cut(s)	725
BstV2I	GAAGAC	1 cut(s)	73
BstX2I	RGATCY	5 cut(s)	352, 403, 418, 596, 643
BstYI	RGATCY	5 cut(s)	352, 403, 418, 596, 643
BstZ17I	GTATAC	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	817
BtsCI	GGATG	1 cut(s)	565
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	2 cut(s)	204, 591
BveI	ACCTGC	1 cut(s)	732
Cac8I	GCNNGC	1 cut(s)	815
CviAII	CATG	4 cut(s)	347, 408, 465, 770
CviJI	RGCY	8 cut(s)	225, 299, 680, 738, 817, 839, 874, 892
CviKI_1	RGCY	8 cut(s)	225, 299, 680, 738, 817, 839, 874, 892
DdeI	CTNAG	6 cut(s)	16, 93, 147, 618, 870, 888
DpnI	GATC	6 cut(s)	354, 405, 420, 598, 645, 855
DpnII	GATC	6 cut(s)	352, 403, 418, 596, 643, 853
Eam1104I	CTCTTC	2 cut(s)	574, 606
EarI	CTCTTC	2 cut(s)	574, 606
Eco147I	AGGCCT	1 cut(s)	817
Eco57I	CTGAAG	2 cut(s)	804, 819
EcoRII	CCWGG	1 cut(s)	660
EcoT22I	ATGCAT	1 cut(s)	413
FaeI	CATG	4 cut(s)	350, 411, 468, 773
FatI	CATG	4 cut(s)	346, 407, 464, 769
FblI	GTMKAC	2 cut(s)	21, 684
Fnu4HI	GCNGC	1 cut(s)	739
FokI	GGATG	1 cut(s)	572
Fsp4HI	GCNGC	1 cut(s)	739
FspBI	CTAG	1 cut(s)	518
GluI	GCNGC	1 cut(s)	739
HaeIII	GGCC	1 cut(s)	817
HapII	CCGG	1 cut(s)	875
Hin1II	CATG	4 cut(s)	350, 411, 468, 773
HinfI	GANTC	5 cut(s)	8, 68, 292, 341, 614
HpaII	CCGG	1 cut(s)	875
HphI	GGTGA	2 cut(s)	76, 196
Hpy166II	GTNNAC	3 cut(s)	22, 187, 685
Hpy188I	TCNGA	8 cut(s)	40, 94, 241, 361, 427, 619, 823, 853
Hpy188III	TCNNGA	4 cut(s)	274, 510, 712, 857
Hpy8I	GTNNAC	3 cut(s)	22, 187, 685
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	3 cut(s)	257, 795, 828
HpyCH4V	TGCA	6 cut(s)	205, 411, 464, 479, 741, 813
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 440
HpyF3I	CTNAG	6 cut(s)	16, 93, 147, 618, 870, 888
Hsp92II	CATG	4 cut(s)	350, 411, 468, 773
Kzo9I	GATC	6 cut(s)	352, 403, 418, 596, 643, 853
LguI	GCTCTTC	1 cut(s)	574
Lsp1109I	GCAGC	1 cut(s)	725
LweI	GCATC	4 cut(s)	192, 420, 488, 682
MaeI	CTAG	1 cut(s)	518
MaeIII	GTNAC	1 cut(s)	590
MalI	GATC	6 cut(s)	354, 405, 420, 598, 645, 855
MboI	GATC	6 cut(s)	352, 403, 418, 596, 643, 853
MboII	GAAGA	7 cut(s)	73, 362, 591, 623, 683, 825, 923
MflI	RGATCY	5 cut(s)	352, 403, 418, 596, 643
MluCI	AATT	3 cut(s)	104, 391, 428
MlyI	GAGTC	2 cut(s)	2, 623
MnlI	CCTC	5 cut(s)	43, 497, 547, 550, 708
Mph1103I	ATGCAT	1 cut(s)	413
MroXI	GAANNNNTTC	2 cut(s)	116, 789
MseI	TTAA	1 cut(s)	846
MspI	CCGG	1 cut(s)	875
MspR9I	CCNGG	1 cut(s)	662
MvaI	CCWGG	1 cut(s)	662
MwoI	GCNNNNNNNGC	2 cut(s)	222, 440
NdeII	GATC	6 cut(s)	352, 403, 418, 596, 643, 853
NlaIII	CATG	4 cut(s)	350, 411, 468, 773
NlaIV	GGNNCC	2 cut(s)	272, 322
NmuCI	GTSAC	1 cut(s)	590
NsiI	ATGCAT	1 cut(s)	413
PaqCI	CACCTGC	1 cut(s)	732
PceI	AGGCCT	1 cut(s)	817
PciSI	GCTCTTC	1 cut(s)	574
PdmI	GAANNNNTTC	2 cut(s)	116, 789
PfeI	GAWTC	3 cut(s)	68, 292, 341
PfoI	TCCNGGA	1 cut(s)	660
PkrI	GCNGC	1 cut(s)	740
PleI	GAGTC	2 cut(s)	2, 622
PpsI	GAGTC	2 cut(s)	2, 622
Psp6I	CCWGG	1 cut(s)	660
PspGI	CCWGG	1 cut(s)	660
PspN4I	GGNNCC	2 cut(s)	272, 322
PstI	CTGCAG	1 cut(s)	743
PsuI	RGATCY	5 cut(s)	352, 403, 418, 596, 643
SapI	GCTCTTC	1 cut(s)	574
SaqAI	TTAA	1 cut(s)	846
SatI	GCNGC	1 cut(s)	739
Sau3AI	GATC	6 cut(s)	352, 403, 418, 596, 643, 853
SchI	GAGTC	2 cut(s)	2, 623
ScrFI	CCNGG	1 cut(s)	662
SfaNI	GCATC	4 cut(s)	192, 420, 488, 682
SfcI	CTRYAG	1 cut(s)	739
Sse9I	AATT	3 cut(s)	104, 391, 428
SseBI	AGGCCT	1 cut(s)	817
SspMI	CTAG	1 cut(s)	518
StuI	AGGCCT	1 cut(s)	817
StyD4I	CCNGG	1 cut(s)	660
TaqI	TCGA	1 cut(s)	526
TasI	AATT	3 cut(s)	104, 391, 428
TfiI	GAWTC	3 cut(s)	68, 292, 341
Tru1I	TTAA	1 cut(s)	846
Tru9I	TTAA	1 cut(s)	846
TscAI	CASTG	2 cut(s)	204, 591
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	1 cut(s)	738
Tsp45I	GTSAC	1 cut(s)	590
TspDTI	ATGAA	9 cut(s)	17, 116, 303, 363, 396, 576, 690, 924, 932
TspGWI	ACGGA	1 cut(s)	783
TspRI	CASTG	2 cut(s)	204, 591
XmiI	GTMKAC	2 cut(s)	21, 684
XmnI	GAANNNNTTC	2 cut(s)	116, 789
XspI	CTAG	1 cut(s)	518
Zsp2I	ATGCAT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.