Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000905

Physical Location & Seq

Genomic Coordinates Reverse (-)

25325243 .. 25325987

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32282.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGATACAGGAAGTTCGAATTCGTTATGCTGGATTTGGTAGGGAGGAGGATGAATGGGTAAATGTGAGAAGAGCAGTGCGTGACAGATCTATTCCTTTAGAAGAGTCCGAGTGTCATGAGGTCAAGGTTGGGGATCTTATCCTATGCTTCCAGGAACGCGAAGATGAAGCTGTCTACTGTGATGCCCATGTTGTGGAAATCCAGAGGAACCTACACGACCAAACAGGCTGCAGGTGTATTTTTGTTGTTCGCTTTGACCATGATAAAAGCAAGGAACAAGTGTTGTTGGGAAGGATATGTTGCAGGCCTTCACAATACACTTCTTCAGCCATTGTTAAATCCGATCAGGACATCAAACCTAAGCCAGAGATAAATAGAGATAAGGACATGAAGTTTTCTTTTCTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAWADEE

Protein Analysis

137

Amino Acids

16.05

Weight (kDa)

5.61

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAWADEE	PF16719	4 - 100	4.2e-35	SAWADEE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15215 AT1G15215 AT1G15215 AT1G15215
fragaria_vesca	FvH4_1g07250 FvH4_1g07250 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_6g32282 FvH4_6g32283
malus_domestica	MD08G1111600.v1.1 MD09G1204600.v1.1 MD15G1091100.v1.1 MD17G1184800.v1.1
prunus_persica	Prupe.1G445500_v2.0.a1 Prupe.1G445500_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1
pyrus_communis	pycom08g09270 pycom09g12150 pycom15g08510 pycom17g19430
rosa_chinensis	RchiOBHm_Chr2g0140241 RchiOBHm_Chr4g0409031 RchiOBHm_Chr5g0076021 RchiOBHm_Chr5g0078201 RchiOBHm_Chr6g0306581
rosa_laevigata	RLG00000010783 RLG00000019858
rosa_multiflora	Rmu_sc0005446.1_g000009
rosa_roxburghii	Rroxscaffold_1G00035110 Rroxscaffold_2G00082850 Rroxscaffold_2G00104960 Rroxscaffold_3G00232630 Rroxscaffold_5G00355740 Rroxscaffold_5G00365450 Rroxscaffold_5G00380960 Rroxscaffold_7G00161650
rosa_rugosa	Rorug02G0361600 Rorug02G0361700 Rorug02G0361700 Rorug02G0361700 Rorug05G0290900 Rorug05G0291000 Rorug06G0350500 Rorug06G0350600
rosa_samantha	Rh2AG412500 Rh2BG422800 Rh2CG398700 Rh2CG405000 Rh2DG432100 Rh4CG272400 Rh5AG500700 Rh5CG321900 Rh6AG463000 Rh6BG437900 Rh6CG477200 Rh6DG463800
rosa_wichuraiana	Rw2G033810 Rw5G047830 Rw6G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	222
Acc36I	ACCTGC	1 cut(s)	222
AccB7I	CCANNNNNTGG	1 cut(s)	193
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	1 cut(s)	159
AclWI	GGATC	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
AlwI	GGATC	1 cut(s)	141
AoxI	GGCC	1 cut(s)	305
ApeKI	GCWGC	1 cut(s)	228
ApoI	RAATTY	1 cut(s)	18
AsuII	TTCGAA	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	229
BfuAI	ACCTGC	1 cut(s)	222
BglII	AGATCT	1 cut(s)	86
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	172
Bpu10I	CCTNAGC	1 cut(s)	360
Bpu14I	TTCGAA	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	193
BsnI	GGCC	1 cut(s)	307
Bsp119I	TTCGAA	1 cut(s)	16
Bsp143I	GATC	3 cut(s)	86, 133, 343
BspANI	GGCC	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	159
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	209
BspMAI	CTGCAG	1 cut(s)	233
BspMI	ACCTGC	1 cut(s)	222
BspPI	GGATC	1 cut(s)	141
BspQI	GCTCTTC	1 cut(s)	64
BspT104I	TTCGAA	1 cut(s)	16
BssMI	GATC	3 cut(s)	86, 133, 343
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	2 cut(s)	64, 96
BstBI	TTCGAA	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	159
BstKTI	GATC	3 cut(s)	89, 136, 346
BstMBI	GATC	3 cut(s)	86, 133, 343
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	229
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	215
BstX2I	RGATCY	2 cut(s)	86, 133
BstYI	RGATCY	2 cut(s)	86, 133
BsuRI	GGCC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
BveI	ACCTGC	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	305
CciI	TCATGA	1 cut(s)	115
CviAII	CATG	4 cut(s)	116, 188, 260, 388
CviJI	RGCY	5 cut(s)	170, 228, 307, 329, 364
CviKI_1	RGCY	5 cut(s)	170, 228, 307, 329, 364
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	3 cut(s)	88, 135, 345
DpnII	GATC	3 cut(s)	86, 133, 343
Eam1104I	CTCTTC	2 cut(s)	64, 96
EarI	CTCTTC	2 cut(s)	64, 96
Eco147I	AGGCCT	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	309
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	150
FaeI	CATG	4 cut(s)	119, 191, 263, 391
FaiI	YATR	7 cut(s)	27, 117, 145, 189, 261, 298, 389
FatI	CATG	4 cut(s)	115, 187, 259, 387
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	229
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	229
GluI	GCNGC	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	307
Hin1II	CATG	4 cut(s)	119, 191, 263, 391
HinfI	GANTC	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	109, 343
Hpy188III	TCNNGA	3 cut(s)	116, 202, 347
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	2 cut(s)	285, 318
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	2 cut(s)	231, 303
HpyF3I	CTNAG	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	119, 191, 263, 391
Kzo9I	GATC	3 cut(s)	86, 133, 343
LguI	GCTCTTC	1 cut(s)	64
LpnPI	CCDG	9 cut(s)	15, 137, 164, 210, 215, 217, 289, 332, 378
Lsp1109I	GCAGC	1 cut(s)	215
LweI	GCATC	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	3 cut(s)	88, 135, 345
MboI	GATC	3 cut(s)	86, 133, 343
MboII	GAAGA	4 cut(s)	81, 113, 173, 315
MflI	RGATCY	2 cut(s)	86, 133
MluCI	AATT	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	4 cut(s)	37, 40, 112, 198
MseI	TTAA	1 cut(s)	336
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	159
NdeII	GATC	3 cut(s)	86, 133, 343
NlaIII	CATG	4 cut(s)	119, 191, 263, 391
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	80
NspV	TTCGAA	1 cut(s)	16
PagI	TCATGA	1 cut(s)	115
PaqCI	CACCTGC	1 cut(s)	222
PceI	AGGCCT	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	64
PflMI	CCANNNNNTGG	1 cut(s)	193
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	230
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	209
PstI	CTGCAG	1 cut(s)	233
PsuI	RGATCY	2 cut(s)	86, 133
SapI	GCTCTTC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	3 cut(s)	86, 133, 343
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	6 cut(s)	123, 129, 172, 213, 236, 361
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	16
Sse9I	AATT	1 cut(s)	18
SseBI	AGGCCT	1 cut(s)	307
StuI	AGGCCT	1 cut(s)	307
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	179
TaqI	TCGA	1 cut(s)	16
TasI	AATT	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	1 cut(s)	228
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	3 cut(s)	66, 180, 404
TspRI	CASTG	1 cut(s)	81
Van91I	CCANNNNNTGG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.