Rw6G040340

Protein SAWADEE HOMEODOMAIN HOMOLOG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000905
Physical Location & Seq
Reverse (-)
64168909 .. 64173076
4168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G040340.1

Sequence Viewer

Length: 738 bp
ATGGACCATGGCCTTCGTCCCAGACAGAGGGAGTTCTTCATTGGCTTCACAAAGGGCGAGATGGAGAGAATGGACAAATTGGTGAGGGAATCAGGAGAAGCAGTGCTGGCCAAAGAATTTTGTCAAAATTTGGCGAAAAGTTTTAATCGCTCCGCTGGTCGTGCTGGAAAACCAATTGTCAAATGGATTCAGGTGCAAAATTGGTTCCAGGAAAGGATGCAAGAGTTACCTAATATATTAAAAGATCTCCAGGGAGTTTGCCCTTCCACTAAGGCACCTAAAAGCAAAGAAAAACCTAAAGCAGAAGAAAAGATCCCAGAGTCAGAGTTGGAATTTGAGGCTAGGTCATCAAAGGACGGGGCATGGTATGATGTTGATATGTTCCTGTGTCACCGAGTTGCTAGTGCGGGAGAAACTGAAGTTCGTGTTAGATTTGTTGGGTTTGGAGCCGAAGAGGATGAGTGGGTTAATGTAAAAAAAGCAGTGCGAGAGCGTTCTGTACCCCTAGAGAATTCAGAATGTAGTTCATTGAAGGTTGGAGACCATGTCCTCTGCTTGCTGGAGAAGAGAGATCAAGCGATCTACTATGATGCTCATATTATAGAAATCCATCGAAGAATGCATGATATAAGGGGGTGTAGGTGTCTTTTCTTTATTCGGTATAATCATGACAACAGTGAGCAATGCAGCTATATCAATCGGGTCCTTGTGATAAGGGCGGAGGTCGCCGTCGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

245

Amino Acids

28.41

Weight (kDa)

7.59

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 109 - 229 2.7e-44 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 274
AciI CCGC 3 cut(s) 153, 407, 719
AclWI GGATC 1 cut(s) 307
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 4 cut(s) 116, 127, 332, 511
AcuI CTGAAG 1 cut(s) 438
AfaI GTAC 1 cut(s) 501
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 1 cut(s) 532
AjnI CCWGG 2 cut(s) 207, 249
AluBI AGCT 1 cut(s) 690
AluI AGCT 1 cut(s) 690
Alw26I GTCTC 1 cut(s) 534
AlwI GGATC 1 cut(s) 307
AoxI GGCC 2 cut(s) 10, 108
ApeKI GCWGC 1 cut(s) 687
ApoI RAATTY 4 cut(s) 116, 127, 332, 511
AspS9I GGNCC 2 cut(s) 4, 703
AsuHPI GGTGA 2 cut(s) 94, 383
AvaII GGWCC 2 cut(s) 4, 703
BalI TGGCCA 1 cut(s) 110
BanI GGYRCC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 699
BccI CCATC 2 cut(s) 55, 618
BceAI ACGGC 1 cut(s) 713
BciT130I CCWGG 2 cut(s) 209, 251
BcoDI GTCTC 1 cut(s) 534
BfaI CTAG 3 cut(s) 342, 402, 506
BglII AGATCT 1 cut(s) 244
BisI GCNGC 1 cut(s) 688
BlsI GCNGC 1 cut(s) 689
Bme1390I CCNGG 2 cut(s) 209, 251
Bme18I GGWCC 2 cut(s) 4, 703
BmgT120I GGNCC 2 cut(s) 4, 703
BmiI GGNNCC 4 cut(s) 206, 276, 448, 704
BmrFI CCNGG 2 cut(s) 209, 251
BmsI GCATC 2 cut(s) 207, 580
BpmI CTGGAG 2 cut(s) 233, 581
BsaI GGTCTC 1 cut(s) 534
BsaJI CCNNGG 2 cut(s) 7, 250
BsaXI ACNNNNNCTCC 4 cut(s) 87, 117, 531, 561
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 689
BseBI CCWGG 2 cut(s) 209, 251
BseDI CCNNGG 2 cut(s) 7, 250
BseGI GGATG 2 cut(s) 222, 463
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMI GCAATG 1 cut(s) 689
BseXI GCAGC 1 cut(s) 699
BshFI GGCC 2 cut(s) 12, 110
BshNI GGYRCC 1 cut(s) 274
BslFI GGGAC 1 cut(s) 3
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 534
BsmFI GGGAC 1 cut(s) 3
BsmI GAATGC 1 cut(s) 624
BsnI GGCC 2 cut(s) 12, 110
Bso31I GGTCTC 1 cut(s) 534
Bsp143I GATC 4 cut(s) 244, 312, 571, 579
Bsp19I CCATGG 1 cut(s) 7
BspACI CCGC 3 cut(s) 153, 407, 719
BspANI GGCC 2 cut(s) 12, 110
BspHI TCATGA 1 cut(s) 667
BspLI GGNNCC 4 cut(s) 206, 276, 448, 704
BspPI GGATC 1 cut(s) 307
BspT107I GGYRCC 1 cut(s) 274
BspTNI GGTCTC 1 cut(s) 534
BsrDI GCAATG 1 cut(s) 689
BssECI CCNNGG 2 cut(s) 7, 250
BssMI GATC 4 cut(s) 244, 312, 571, 579
BssT1I CCWWGG 1 cut(s) 7
Bst2UI CCWGG 2 cut(s) 209, 251
Bst4CI ACNGT 1 cut(s) 677
Bst6I CTCTTC 2 cut(s) 447, 560
BstC8I GCNNGC 2 cut(s) 108, 557
BstDEI CTNAG 1 cut(s) 270
BstDSI CCRYGG 1 cut(s) 7
BstF5I GGATG 2 cut(s) 222, 463
BstKTI GATC 4 cut(s) 247, 315, 574, 582
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 4 cut(s) 244, 312, 571, 579
BstMWI GCNNNNNNNGC 3 cut(s) 107, 161, 725
BstNI CCWGG 2 cut(s) 209, 251
BstSCI CCNGG 2 cut(s) 207, 249
BstV1I GCAGC 1 cut(s) 699
BstX2I RGATCY 2 cut(s) 244, 312
BstYI RGATCY 2 cut(s) 244, 312
BsuRI GGCC 2 cut(s) 12, 110
BtgI CCRYGG 1 cut(s) 7
BtsCI GGATG 2 cut(s) 222, 463
BtsI GCAGTG 2 cut(s) 108, 489
BtsIMutI CAGTG 3 cut(s) 108, 489, 682
Cac8I GCNNGC 2 cut(s) 108, 557
CciI TCATGA 1 cut(s) 667
Cfr13I GGNCC 2 cut(s) 4, 703
Csp6I GTAC 1 cut(s) 500
CviAII CATG 5 cut(s) 8, 363, 545, 623, 668
CviJI RGCY 6 cut(s) 12, 45, 110, 341, 449, 690
CviKI_1 RGCY 6 cut(s) 12, 45, 110, 341, 449, 690
CviQI GTAC 1 cut(s) 500
DdeI CTNAG 1 cut(s) 270
DpnI GATC 4 cut(s) 246, 314, 573, 581
DpnII GATC 4 cut(s) 244, 312, 571, 579
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 2 cut(s) 447, 560
EarI CTCTTC 2 cut(s) 447, 560
EciI GGCGGA 1 cut(s) 734
Eco130I CCWWGG 1 cut(s) 7
Eco31I GGTCTC 1 cut(s) 534
Eco47I GGWCC 2 cut(s) 4, 703
Eco57I CTGAAG 1 cut(s) 438
EcoO109I RGGNCCY 1 cut(s) 703
EcoRI GAATTC 1 cut(s) 511
EcoRII CCWGG 2 cut(s) 207, 249
EcoT14I CCWWGG 1 cut(s) 7
EcoT22I ATGCAT 1 cut(s) 624
ErhI CCWWGG 1 cut(s) 7
FaeI CATG 5 cut(s) 11, 366, 548, 626, 671
FaqI GGGAC 1 cut(s) 3
FatI CATG 5 cut(s) 7, 362, 544, 622, 667
FauI CCCGC 1 cut(s) 400
Fnu4HI GCNGC 1 cut(s) 688
FokI GGATG 2 cut(s) 229, 470
Fsp4HI GCNGC 1 cut(s) 688
FspBI CTAG 3 cut(s) 342, 402, 506
GluI GCNGC 1 cut(s) 688
GsuI CTGGAG 2 cut(s) 233, 581
HaeIII GGCC 2 cut(s) 12, 110
Hin1II CATG 5 cut(s) 11, 366, 548, 626, 671
HinfI GANTC 3 cut(s) 89, 187, 320
HphI GGTGA 2 cut(s) 94, 383
Hpy188I TCNGA 2 cut(s) 325, 517
Hpy188III TCNNGA 2 cut(s) 93, 668
Hpy99I CGWCG 1 cut(s) 734
HpyAV CCTTC 3 cut(s) 23, 273, 526
HpyCH4III ACNGT 1 cut(s) 677
HpyCH4V TGCA 4 cut(s) 196, 220, 622, 687
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 161, 725
HpyF3I CTNAG 1 cut(s) 270
Hsp92II CATG 5 cut(s) 11, 366, 548, 626, 671
Kzo9I GATC 4 cut(s) 244, 312, 571, 579
LmnI GCTCC 2 cut(s) 155, 446
Lsp1109I GCAGC 1 cut(s) 699
LweI GCATC 2 cut(s) 207, 580
MaeI CTAG 3 cut(s) 342, 402, 506
MaeIII GTNAC 2 cut(s) 225, 389
MalI GATC 4 cut(s) 246, 314, 573, 581
MboI GATC 4 cut(s) 244, 312, 571, 579
MboII GAAGA 5 cut(s) 28, 317, 464, 577, 627
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 2 cut(s) 244, 312
MlsI TGGCCA 1 cut(s) 110
MluCI AATT 7 cut(s) 77, 116, 127, 174, 199, 332, 511
MluNI TGGCCA 1 cut(s) 110
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 2 cut(s) 309, 517
MnlI CCTC 6 cut(s) 21, 78, 331, 448, 560, 715
Mox20I TGGCCA 1 cut(s) 110
Mph1103I ATGCAT 1 cut(s) 624
MscI TGGCCA 1 cut(s) 110
MseI TTAA 3 cut(s) 144, 239, 468
Msp20I TGGCCA 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 155
MspR9I CCNGG 2 cut(s) 209, 251
MunI CAATTG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 624
MvaI CCWGG 2 cut(s) 209, 251
MwoI GCNNNNNNNGC 3 cut(s) 107, 161, 725
NcoI CCATGG 1 cut(s) 7
NdeII GATC 4 cut(s) 244, 312, 571, 579
NlaIII CATG 5 cut(s) 11, 366, 548, 626, 671
NlaIV GGNNCC 4 cut(s) 206, 276, 448, 704
NmuCI GTSAC 1 cut(s) 389
NsiI ATGCAT 1 cut(s) 624
PagI TCATGA 1 cut(s) 667
PctI GAATGC 1 cut(s) 624
PfeI GAWTC 2 cut(s) 89, 187
PflFI GACNNNGTC 1 cut(s) 545
PfoI TCCNGGA 1 cut(s) 207
PkrI GCNGC 1 cut(s) 689
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PpuMI RGGWCCY 1 cut(s) 703
Psp5II RGGWCCY 1 cut(s) 703
Psp6I CCWGG 2 cut(s) 207, 249
PspGI CCWGG 2 cut(s) 207, 249
PspN4I GGNNCC 4 cut(s) 206, 276, 448, 704
PspPI GGNCC 2 cut(s) 4, 703
PspPPI RGGWCCY 1 cut(s) 703
PsuI RGATCY 2 cut(s) 244, 312
PsyI GACNNNGTC 1 cut(s) 545
RsaI GTAC 1 cut(s) 501
RsaNI GTAC 1 cut(s) 500
SaqAI TTAA 3 cut(s) 144, 239, 468
SatI GCNGC 1 cut(s) 688
Sau3AI GATC 4 cut(s) 244, 312, 571, 579
Sau96I GGNCC 2 cut(s) 4, 703
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 2 cut(s) 209, 251
SetI ASST 9 cut(s) 195, 232, 280, 298, 347, 537, 644, 692, 726
SfaNI GCATC 2 cut(s) 207, 580
SinI GGWCC 2 cut(s) 4, 703
Sse9I AATT 7 cut(s) 77, 116, 127, 174, 199, 332, 511
SsiI CCGC 3 cut(s) 153, 407, 719
SspMI CTAG 3 cut(s) 342, 402, 506
StyD4I CCNGG 2 cut(s) 207, 249
StyI CCWWGG 1 cut(s) 7
TaaI ACNGT 1 cut(s) 677
TaqI TCGA 1 cut(s) 613
TasI AATT 7 cut(s) 77, 116, 127, 174, 199, 332, 511
TfiI GAWTC 2 cut(s) 89, 187
Tru1I TTAA 3 cut(s) 144, 239, 468
Tru9I TTAA 3 cut(s) 144, 239, 468
TscAI CASTG 3 cut(s) 108, 489, 682
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 1 cut(s) 687
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 2 cut(s) 28, 516
TspRI CASTG 3 cut(s) 108, 489, 682
Tth111I GACNNNGTC 1 cut(s) 545
VpaK11BI GGWCC 2 cut(s) 4, 703
XapI RAATTY 4 cut(s) 116, 127, 332, 511
XcmI CCANNNNNNNNNTGG 1 cut(s) 180
XspI CTAG 3 cut(s) 342, 402, 506
Zsp2I ATGCAT 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.