Rroxscaffold_1G00035110

Protein SAWADEE HOMEODOMAIN HOMOLOG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000905
Physical Location & Seq
Forward (+)
51088920 .. 51092485
3566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00035110.1

Sequence Viewer

Length: 546 bp
ATGGCATCTCCCGGCACCCCCCGCACCGACCCGCCCTCCACCGCCCTCGGACCAGGCCGCCCAACCGCCCCATGCCATCGCCTTGCTCCGCCGCTGCCCCCGCACCCGGATCGAAGCCACCCCGGCTCCGTTCGATCCGACCCGGCCGGAAAACCCATTTTCCGGCGTTGCACGGCCGATCCTCCCAATTTTCGTGATCTCCTCCTCTTGTCGATCATCCCCATACCCTCCTTGCTTGACGATTTTGAGTGTAAAGCGAAAGACCAAGGATTGAAGCCAACGGTGACCGATGGTTTGAGATGGTGGATGATCGTGAATCGTATTTTGGGCTGCTTTGAAGACGCAGCGGGATTAGAGATGGAGAGTGGACAAATTGGTGAGGGAGTCCGGAGAAGCAGTACTTGCCAAGAATTTTGTCAAAATTTGGCAAAATTTTTTAATCACTCCGCTGGTCGTGCTGGAAAACCAATTGTGAAATGGATTCAGGTGCAAAATTGGTTCCAGGAAAGGATGCAAGAGTTACCAAACATATTAAAAGATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

181

Amino Acids

20.06

Weight (kDa)

8.6

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AccIII TCCGGA 1 cut(s) 387
AclWI GGATC 3 cut(s) 117, 129, 173
AcoI YGGCCR 2 cut(s) 144, 174
AcsI RAATTY 3 cut(s) 410, 421, 431
AfaI GTAC 1 cut(s) 400
AfiI CCNNNNNNNGG 2 cut(s) 106, 162
AgsI TTSAA 2 cut(s) 274, 338
AjnI CCWGG 2 cut(s) 52, 501
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AlwI GGATC 3 cut(s) 117, 129, 173
Aor13HI TCCGGA 1 cut(s) 387
AoxI GGCC 3 cut(s) 55, 144, 174
ApeKI GCWGC 3 cut(s) 94, 330, 344
ApoI RAATTY 3 cut(s) 410, 421, 431
ArsI GACNNNNNNTTYG 2 cut(s) 277, 309
AspS9I GGNCC 1 cut(s) 50
AsuC2I CCSGG 4 cut(s) 12, 107, 123, 143
AsuHPI GGTGA 2 cut(s) 295, 389
AvaII GGWCC 1 cut(s) 50
BanI GGYRCC 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 345
BbvI GCAGC 3 cut(s) 81, 317, 356
BccI CCATC 4 cut(s) 84, 284, 294, 352
BceAI ACGGC 1 cut(s) 189
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 2 cut(s) 54, 503
BcnI CCSGG 4 cut(s) 12, 107, 123, 143
BfaI CTAG 1 cut(s) 544
BglI GCCNNNNNGGC 1 cut(s) 123
BglII AGATCT 1 cut(s) 538
BisI GCNGC 5 cut(s) 58, 92, 95, 331, 345
BlsI GCNGC 5 cut(s) 59, 93, 96, 332, 346
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 6 cut(s) 12, 54, 107, 123, 143, 503
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 3 cut(s) 16, 127, 500
BmrFI CCNGG 6 cut(s) 12, 54, 107, 123, 143, 503
BmsI GCATC 2 cut(s) 14, 501
BpiI GAAGAC 1 cut(s) 345
BpuMI CCSGG 4 cut(s) 12, 107, 123, 143
BsaJI CCNNGG 3 cut(s) 46, 121, 265
BsaWI WCCGGW 1 cut(s) 387
BsaXI ACNNNNNCTCC 6 cut(s) 20, 50, 110, 140, 382, 412
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 162
BseAI TCCGGA 1 cut(s) 387
BseBI CCWGG 2 cut(s) 54, 503
BseDI CCNNGG 3 cut(s) 46, 121, 265
BseGI GGATG 3 cut(s) 216, 312, 516
BseLI CCNNNNNNNGG 2 cut(s) 106, 162
BseRI GAGGAG 2 cut(s) 191, 194
BseX3I CGGCCG 2 cut(s) 144, 174
BseXI GCAGC 3 cut(s) 81, 317, 356
Bsh1285I CGRYCG 2 cut(s) 147, 177
BshFI GGCC 3 cut(s) 57, 146, 176
BshNI GGYRCC 1 cut(s) 14
BsiEI CGRYCG 2 cut(s) 147, 177
BsiSI CCGG 7 cut(s) 12, 107, 123, 143, 147, 163, 388
BslI CCNNNNNNNGG 2 cut(s) 106, 162
BsnI GGCC 3 cut(s) 57, 146, 176
Bsp13I TCCGGA 1 cut(s) 387
Bsp143I GATC 7 cut(s) 109, 134, 178, 196, 213, 309, 538
BspANI GGCC 3 cut(s) 57, 146, 176
BspEI TCCGGA 1 cut(s) 387
BspLI GGNNCC 3 cut(s) 16, 127, 500
BspPI GGATC 3 cut(s) 117, 129, 173
BspT107I GGYRCC 1 cut(s) 14
BssECI CCNNGG 3 cut(s) 46, 121, 265
BssMI GATC 7 cut(s) 109, 134, 178, 196, 213, 309, 538
BssT1I CCWWGG 1 cut(s) 265
Bst2UI CCWGG 2 cut(s) 54, 503
Bst4CI ACNGT 1 cut(s) 283
BstAPI GCANNNNNTGC 1 cut(s) 402
BstEII GGTNACC 1 cut(s) 283
BstF5I GGATG 3 cut(s) 216, 312, 516
BstKTI GATC 7 cut(s) 112, 137, 181, 199, 216, 312, 541
BstMBI GATC 7 cut(s) 109, 134, 178, 196, 213, 309, 538
BstMCI CGRYCG 2 cut(s) 147, 177
BstMWI GCNNNNNNNGC 5 cut(s) 21, 100, 123, 402, 455
BstNI CCWGG 2 cut(s) 54, 503
BstPI GGTNACC 1 cut(s) 283
BstSCI CCNGG 6 cut(s) 10, 52, 105, 121, 141, 501
BstV1I GCAGC 3 cut(s) 81, 317, 356
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BstZI CGGCCG 2 cut(s) 144, 174
BsuRI GGCC 3 cut(s) 57, 146, 176
BtgZI GCGATG 1 cut(s) 62
BtsCI GGATG 3 cut(s) 216, 312, 516
Cfr13I GGNCC 1 cut(s) 50
CseI GACGC 1 cut(s) 350
Csp6I GTAC 1 cut(s) 399
CviAII CATG 1 cut(s) 72
CviJI RGCY 7 cut(s) 57, 117, 126, 146, 176, 277, 330
CviKI_1 RGCY 7 cut(s) 57, 117, 126, 146, 176, 277, 330
CviQI GTAC 1 cut(s) 399
DpnI GATC 7 cut(s) 111, 136, 180, 198, 215, 311, 540
DpnII GATC 7 cut(s) 109, 134, 178, 196, 213, 309, 538
EaeI YGGCCR 2 cut(s) 144, 174
EagI CGGCCG 2 cut(s) 144, 174
EciI GGCGGA 1 cut(s) 78
EclXI CGGCCG 2 cut(s) 144, 174
Eco130I CCWWGG 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 50
Eco52I CGGCCG 2 cut(s) 144, 174
Eco91I GGTNACC 1 cut(s) 283
EcoO65I GGTNACC 1 cut(s) 283
EcoRII CCWGG 2 cut(s) 52, 501
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 1 cut(s) 75
FaiI YATR 3 cut(s) 73, 224, 530
FalI AAGNNNNNCTT 2 cut(s) 385, 417
FatI CATG 1 cut(s) 71
FauI CCCGC 4 cut(s) 29, 39, 108, 340
Fnu4HI GCNGC 5 cut(s) 58, 92, 95, 331, 345
FokI GGATG 3 cut(s) 203, 319, 523
Fsp4HI GCNGC 5 cut(s) 58, 92, 95, 331, 345
FspBI CTAG 1 cut(s) 544
GluI GCNGC 5 cut(s) 58, 92, 95, 331, 345
HaeIII GGCC 3 cut(s) 57, 146, 176
HapII CCGG 7 cut(s) 12, 107, 123, 143, 147, 163, 388
HgaI GACGC 1 cut(s) 350
Hin1II CATG 1 cut(s) 75
HinfI GANTC 3 cut(s) 316, 384, 481
HpaII CCGG 7 cut(s) 12, 107, 123, 143, 147, 163, 388
HphI GGTGA 2 cut(s) 295, 389
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 2 cut(s) 50, 139
Hpy188III TCNNGA 3 cut(s) 194, 313, 388
Hpy8I GTNNAC 1 cut(s) 368
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 3 cut(s) 171, 490, 514
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 100, 123, 402, 455
Hsp92II CATG 1 cut(s) 75
Kpn2I TCCGGA 1 cut(s) 387
Kzo9I GATC 7 cut(s) 109, 134, 178, 196, 213, 309, 538
LmnI GCTCC 2 cut(s) 91, 131
Lsp1109I GCAGC 3 cut(s) 81, 317, 356
LweI GCATC 2 cut(s) 14, 501
MaeI CTAG 1 cut(s) 544
MaeIII GTNAC 2 cut(s) 283, 519
MalI GATC 7 cut(s) 111, 136, 180, 198, 215, 311, 540
MboI GATC 7 cut(s) 109, 134, 178, 196, 213, 309, 538
MboII GAAGA 1 cut(s) 350
MfeI CAATTG 1 cut(s) 468
MflI RGATCY 1 cut(s) 538
MluCI AATT 7 cut(s) 187, 372, 410, 421, 431, 468, 493
MlyI GAGTC 1 cut(s) 393
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 7 cut(s) 46, 56, 192, 212, 215, 238, 373
MroI TCCGGA 1 cut(s) 387
MseI TTAA 2 cut(s) 438, 533
MspA1I CMGCKG 3 cut(s) 94, 347, 449
MspI CCGG 7 cut(s) 12, 107, 123, 143, 147, 163, 388
MspR9I CCNGG 6 cut(s) 12, 54, 107, 123, 143, 503
MunI CAATTG 1 cut(s) 468
MvaI CCWGG 2 cut(s) 54, 503
MwoI GCNNNNNNNGC 5 cut(s) 21, 100, 123, 402, 455
NciI CCSGG 4 cut(s) 12, 107, 123, 143
NdeII GATC 7 cut(s) 109, 134, 178, 196, 213, 309, 538
NlaIII CATG 1 cut(s) 75
NlaIV GGNNCC 3 cut(s) 16, 127, 500
NmuCI GTSAC 1 cut(s) 283
PfeI GAWTC 2 cut(s) 316, 481
PfoI TCCNGGA 1 cut(s) 501
PkrI GCNGC 5 cut(s) 59, 93, 96, 332, 346
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
Psp6I CCWGG 2 cut(s) 52, 501
PspEI GGTNACC 1 cut(s) 283
PspGI CCWGG 2 cut(s) 52, 501
PspN4I GGNNCC 3 cut(s) 16, 127, 500
PspPI GGNCC 1 cut(s) 50
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 1 cut(s) 400
RsaNI GTAC 1 cut(s) 399
SaqAI TTAA 2 cut(s) 438, 533
SatI GCNGC 5 cut(s) 58, 92, 95, 331, 345
Sau3AI GATC 7 cut(s) 109, 134, 178, 196, 213, 309, 538
Sau96I GGNCC 1 cut(s) 50
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 1 cut(s) 393
ScrFI CCNGG 6 cut(s) 12, 54, 107, 123, 143, 503
SetI ASST 1 cut(s) 489
SfaNI GCATC 2 cut(s) 14, 501
SinI GGWCC 1 cut(s) 50
Sse9I AATT 7 cut(s) 187, 372, 410, 421, 431, 468, 493
SspMI CTAG 1 cut(s) 544
StyD4I CCNGG 6 cut(s) 10, 52, 105, 121, 141, 501
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 1 cut(s) 283
TaqI TCGA 3 cut(s) 112, 133, 212
TaqII GACCGA 1 cut(s) 302
TasI AATT 7 cut(s) 187, 372, 410, 421, 431, 468, 493
TatI WGTACW 1 cut(s) 398
TauI GCSGC 2 cut(s) 60, 94
TfiI GAWTC 2 cut(s) 316, 481
Tru1I TTAA 2 cut(s) 438, 533
Tru9I TTAA 2 cut(s) 438, 533
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 3 cut(s) 94, 330, 344
Tsp45I GTSAC 1 cut(s) 283
TspGWI ACGGA 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 3 cut(s) 410, 421, 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 474
XspI CTAG 1 cut(s) 544
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.