Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000905

Physical Location & Seq

Genomic Coordinates Forward (+)

82889657 .. 82893965

Gene Structure 4309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G047830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGACAAATTGGTGAGGGAGTCAGGAGAAGTCGTGCTTGCCAAAGAATGTTGTCAAAATCTGGCAAAAAGTTTTAATCACTCCGGTGGTCGTGCTGGAAAACCAATTGTGAAATGGATTCAGGTTGATCTAGACAACATAGAGGAGGAAGAATTCCCAGGGGTGCAGGACTTAGAATTTCTTGACTGCATTTTAGAGGAAGGTGACATGCTTTATATCCCACCAAAGTGGTGGCACAATGTGCGGTCTTTGACAATGAGTATGTCGGTTACGGTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0007623 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008214 GO:0008276 GO:0008757 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010452 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016278 GO:0016279 GO:0016491 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032451 GO:0032452 GO:0034968 GO:0036211 GO:0042054 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0046975 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

93

Amino Acids

10.62

Weight (kDa)

4.64

Isoelectric Point (pI)

58.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	38 - 91	2.4e-13	Cupin-like domain
JmjC_2	PF08007	39 - 92	1.7e-09	JmjC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15215 AT1G15215 AT1G15215 AT1G15215
fragaria_vesca	FvH4_1g07250 FvH4_1g07250 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_6g32282 FvH4_6g32283
malus_domestica	MD08G1111600.v1.1 MD09G1204600.v1.1 MD15G1091100.v1.1 MD17G1184800.v1.1
prunus_persica	Prupe.1G445500_v2.0.a1 Prupe.1G445500_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1
pyrus_communis	pycom08g09270 pycom09g12150 pycom15g08510 pycom17g19430
rosa_chinensis	RchiOBHm_Chr2g0140241 RchiOBHm_Chr4g0409031 RchiOBHm_Chr5g0076021 RchiOBHm_Chr5g0078201 RchiOBHm_Chr6g0306581
rosa_laevigata	RLG00000010783 RLG00000019858
rosa_multiflora	Rmu_sc0005446.1_g000009
rosa_roxburghii	Rroxscaffold_1G00035110 Rroxscaffold_2G00082850 Rroxscaffold_2G00104960 Rroxscaffold_3G00232630 Rroxscaffold_5G00355740 Rroxscaffold_5G00365450 Rroxscaffold_5G00380960 Rroxscaffold_7G00161650
rosa_rugosa	Rorug02G0361600 Rorug02G0361700 Rorug02G0361700 Rorug02G0361700 Rorug05G0290900 Rorug05G0291000 Rorug06G0350500 Rorug06G0350600
rosa_samantha	Rh2AG412500 Rh2BG422800 Rh2CG398700 Rh2CG405000 Rh2DG432100 Rh4CG272400 Rh5AG500700 Rh5CG321900 Rh6AG463000 Rh6BG437900 Rh6CG477200 Rh6DG463800
rosa_wichuraiana	Rw2G033810 Rw5G047830 Rw6G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	244
AcsI	RAATTY	2 cut(s)	152, 176
AdeI	CACNNNGTG	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	157
AleI	CACNNNNGTG	2 cut(s)	84, 226
ApoI	RAATTY	2 cut(s)	152, 176
AsuHPI	GGTGA	2 cut(s)	25, 215
BciT130I	CCWGG	1 cut(s)	159
BfaI	CTAG	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	157, 158
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	157, 158
BseRI	GAGGAG	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	1 cut(s)	244
BssECI	CCNNGG	2 cut(s)	157, 158
BssMI	GATC	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	274
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	172
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	157
BstXI	CCANNNNNNTGG	2 cut(s)	228, 231
Cac8I	GCNNGC	1 cut(s)	39
CviAII	CATG	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	172
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
DraIII	CACNNNGTG	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	157
FaeI	CATG	1 cut(s)	211
FaiI	YATR	4 cut(s)	140, 209, 216, 263
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FatI	CATG	1 cut(s)	207
FspBI	CTAG	1 cut(s)	131
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	1 cut(s)	211
HinfI	GANTC	2 cut(s)	20, 118
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	2 cut(s)	25, 215
Hpy188III	TCNNGA	3 cut(s)	24, 131, 182
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	166, 189
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	1 cut(s)	172
Hsp92II	CATG	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	127
LpnPI	CCDG	8 cut(s)	9, 47, 81, 97, 107, 144, 152, 171
MaeI	CTAG	1 cut(s)	131
MaeIII	GTNAC	2 cut(s)	203, 268
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	1 cut(s)	161
MfeI	CAATTG	1 cut(s)	105
MluCI	AATT	4 cut(s)	8, 105, 152, 176
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	4 cut(s)	9, 136, 139, 190
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	2 cut(s)	84, 226
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	159
MunI	CAATTG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	211
OliI	CACNNNNGTG	2 cut(s)	84, 226
PasI	CCCWGGG	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
RseI	CAYNNNNRTG	2 cut(s)	84, 226
SaqAI	TTAA	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	2 cut(s)	126, 205
SmiMI	CAYNNNNRTG	2 cut(s)	84, 226
Sse9I	AATT	4 cut(s)	8, 105, 152, 176
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	274
TasI	AATT	4 cut(s)	8, 105, 152, 176
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	203
XapI	RAATTY	2 cut(s)	152, 176
XbaI	TCTAGA	1 cut(s)	130
XceI	RCATGY	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	2 cut(s)	111, 228
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.