Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000905

Physical Location & Seq

Genomic Coordinates Forward (+)

28399076 .. 28403264

Gene Structure 4189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAAAGACTCAAAATTAGCAAAGAATCTTCATCAGTCAGAGACAATGGAAAGAAAACCAATGAATTCCCTCTCTGTATTCACCAATTCTGAGATTATGAAAATGGAGAATATTTTCAAGGAGACACCACAACAATCACTTACTCAGGAGTTTTTCCAAAATCTTGCAACAAATTTCAGCTGCCAACCAAGCCGTGTTGGAAAATCGGATATAACAAGGCAACAGGTGGAAGGTTGGTTCCAGAGTAAACGAAAAGAGATTCAAGCCAAAGGCACTTCGTCATCTGGTGCCTTTGATTGGGTTGTTGAATCCCATGAAGATCTTTCAGATTTGACCATGTTCAGCAATGCACCTGACAATTCTCAGAAGCCAAAAGGTCATGATCTAGATCCATGCGTCACAGATCTTTCAGAGTTGGCATTTGAAGCAAAATCATCGAAAGACGGTGCATGGTATGATGTTGCTTCTTTCCTCTCCTACAGAGTTGTCAGTTCAGGAGAACTAGAAGTTCGAGTTCGTTATGCTGGATTTGGTAGGGAGGAGGATGAATGGGTAAATGTGAGAAGAGCAGTGCGTGACAGATCTATTCCTCTAGAAGAGTCTGAGTGTCATAAGGTCAAGGTTGGGGATCTTGTCCTATGCTTCCAGGAACGAGAAGATGAAGCTGTCTACTGTGATGCCCATGTTCTGGAAATCCACAGGAGCCTACATGACCAAACAGGCTGCAGGTGTATTTTTGTTGTTCGCTTCAACCATGATAAAAGCAAGGAACAAGTTTCGTTGGGAAGGTTATGTTGTAGGCCTTCACAATACACTTCTTCAGCCATTGTTAAACCCAATCAGGACATCAATACTAAGCAGGAGATAAATAGAGACAAGGACATGAAGTTTTCTTTTCTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAWADEE

Protein Analysis

301

Amino Acids

34.58

Weight (kDa)

5.83

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAWADEE	PF16719	138 - 265	6.6e-45	SAWADEE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15215 AT1G15215 AT1G15215 AT1G15215
fragaria_vesca	FvH4_1g07250 FvH4_1g07250 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_6g32282 FvH4_6g32283
malus_domestica	MD08G1111600.v1.1 MD09G1204600.v1.1 MD15G1091100.v1.1 MD17G1184800.v1.1
prunus_persica	Prupe.1G445500_v2.0.a1 Prupe.1G445500_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1
pyrus_communis	pycom08g09270 pycom09g12150 pycom15g08510 pycom17g19430
rosa_chinensis	RchiOBHm_Chr2g0140241 RchiOBHm_Chr4g0409031 RchiOBHm_Chr5g0076021 RchiOBHm_Chr5g0078201 RchiOBHm_Chr6g0306581
rosa_laevigata	RLG00000010783 RLG00000019858
rosa_multiflora	Rmu_sc0005446.1_g000009
rosa_roxburghii	Rroxscaffold_1G00035110 Rroxscaffold_2G00082850 Rroxscaffold_2G00104960 Rroxscaffold_3G00232630 Rroxscaffold_5G00355740 Rroxscaffold_5G00365450 Rroxscaffold_5G00380960 Rroxscaffold_7G00161650
rosa_rugosa	Rorug02G0361600 Rorug02G0361700 Rorug02G0361700 Rorug02G0361700 Rorug05G0290900 Rorug05G0291000 Rorug06G0350500 Rorug06G0350600
rosa_samantha	Rh2AG412500 Rh2BG422800 Rh2CG398700 Rh2CG405000 Rh2DG432100 Rh4CG272400 Rh5AG500700 Rh5CG321900 Rh6AG463000 Rh6BG437900 Rh6CG477200 Rh6DG463800
rosa_wichuraiana	Rw2G033810 Rw5G047830 Rw6G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	717
Acc36I	ACCTGC	1 cut(s)	717
AccB1I	GGYRCC	1 cut(s)	287
AccB7I	CCANNNNNTGG	1 cut(s)	688
AccI	GTMKAC	1 cut(s)	669
AclWI	GGATC	2 cut(s)	383, 636
AcsI	RAATTY	2 cut(s)	64, 172
AcuI	CTGAAG	1 cut(s)	804
AfiI	CCNNNNNNNGG	2 cut(s)	297, 688
AgsI	TTSAA	5 cut(s)	118, 263, 308, 425, 751
AjnI	CCWGG	1 cut(s)	645
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	2 cut(s)	180, 665
AluI	AGCT	2 cut(s)	180, 665
Alw26I	GTCTC	3 cut(s)	35, 116, 867
AlwI	GGATC	2 cut(s)	383, 636
AoxI	GGCC	1 cut(s)	800
ApeKI	GCWGC	2 cut(s)	180, 723
ApoI	RAATTY	2 cut(s)	64, 172
Asp700I	GAANNNNTTC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	167, 710
BceAI	ACGGC	1 cut(s)	177
BcgI	CGANNNNNNTGC	2 cut(s)	417, 451
BciT130I	CCWGG	1 cut(s)	647
BcoDI	GTCTC	3 cut(s)	35, 116, 867
BfaI	CTAG	3 cut(s)	386, 503, 593
BfmI	CTRYAG	2 cut(s)	478, 724
BfuAI	ACCTGC	1 cut(s)	717
BglII	AGATCT	3 cut(s)	319, 403, 581
BisI	GCNGC	2 cut(s)	181, 724
BlsI	GCNGC	2 cut(s)	182, 725
Bme1390I	CCNGG	1 cut(s)	647
BmiI	GGNNCC	3 cut(s)	239, 289, 704
BmrFI	CCNGG	1 cut(s)	647
BmsI	GCATC	1 cut(s)	667
BsaBI	GATNNNNATC	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 688
Bse3DI	GCAATG	1 cut(s)	352
Bse8I	GATNNNNATC	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	647
BseGI	GGATG	1 cut(s)	550
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	297, 688
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	4 cut(s)	81, 158, 377, 594
BseRI	GAGGAG	1 cut(s)	554
BseXI	GCAGC	2 cut(s)	167, 710
BshFI	GGCC	1 cut(s)	802
BshNI	GGYRCC	1 cut(s)	287
BslI	CCNNNNNNNGG	2 cut(s)	297, 688
BsmAI	GTCTC	3 cut(s)	35, 116, 867
BsnI	GGCC	1 cut(s)	802
Bsp143I	GATC	6 cut(s)	319, 382, 388, 403, 581, 628
BspANI	GGCC	1 cut(s)	802
BspCNI	CTCAG	4 cut(s)	82, 157, 376, 595
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	3 cut(s)	239, 289, 704
BspMAI	CTGCAG	1 cut(s)	728
BspMI	ACCTGC	1 cut(s)	717
BspPI	GGATC	2 cut(s)	383, 636
BspQI	GCTCTTC	1 cut(s)	559
BspT107I	GGYRCC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	352
BssMI	GATC	6 cut(s)	319, 382, 388, 403, 581, 628
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	2 cut(s)	446, 674
Bst6I	CTCTTC	2 cut(s)	559, 591
BstDEI	CTNAG	5 cut(s)	90, 144, 363, 603, 855
BstF5I	GGATG	1 cut(s)	550
BstKTI	GATC	6 cut(s)	322, 385, 391, 406, 584, 631
BstMAI	GTCTC	3 cut(s)	35, 116, 867
BstMBI	GATC	6 cut(s)	319, 382, 388, 403, 581, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 425
BstNI	CCWGG	1 cut(s)	647
BstSCI	CCNGG	1 cut(s)	645
BstSFI	CTRYAG	2 cut(s)	478, 724
BstV1I	GCAGC	2 cut(s)	167, 710
BstX2I	RGATCY	5 cut(s)	319, 388, 403, 581, 628
BstYI	RGATCY	5 cut(s)	319, 388, 403, 581, 628
BsuRI	GGCC	1 cut(s)	802
BtsCI	GGATG	1 cut(s)	550
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	1 cut(s)	576
BveI	ACCTGC	1 cut(s)	717
CciI	TCATGA	1 cut(s)	379
CseI	GACGC	1 cut(s)	385
CviAII	CATG	9 cut(s)	314, 337, 380, 393, 450, 683, 710, 755, 883
CviJI	RGCY	9 cut(s)	180, 192, 266, 370, 665, 705, 723, 802, 824
CviKI_1	RGCY	9 cut(s)	180, 192, 266, 370, 665, 705, 723, 802, 824
DdeI	CTNAG	5 cut(s)	90, 144, 363, 603, 855
DpnI	GATC	6 cut(s)	321, 384, 390, 405, 583, 630
DpnII	GATC	6 cut(s)	319, 382, 388, 403, 581, 628
Eam1104I	CTCTTC	2 cut(s)	559, 591
EarI	CTCTTC	2 cut(s)	559, 591
Eco147I	AGGCCT	1 cut(s)	802
Eco57I	CTGAAG	1 cut(s)	804
EcoRI	GAATTC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	645
FaeI	CATG	9 cut(s)	317, 340, 383, 396, 453, 686, 713, 758, 886
FatI	CATG	9 cut(s)	313, 336, 379, 392, 449, 682, 709, 754, 882
FblI	GTMKAC	1 cut(s)	669
Fnu4HI	GCNGC	2 cut(s)	181, 724
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	2 cut(s)	181, 724
FspBI	CTAG	3 cut(s)	386, 503, 593
GluI	GCNGC	2 cut(s)	181, 724
HaeIII	GGCC	1 cut(s)	802
HgaI	GACGC	1 cut(s)	385
Hin1II	CATG	9 cut(s)	317, 340, 383, 396, 453, 686, 713, 758, 886
HinfI	GANTC	5 cut(s)	8, 25, 259, 308, 599
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	248, 670
Hpy188I	TCNGA	7 cut(s)	40, 91, 208, 328, 366, 412, 604
Hpy188III	TCNNGA	8 cut(s)	146, 241, 380, 386, 495, 593, 689, 842
Hpy8I	GTNNAC	2 cut(s)	248, 670
HpyAV	CCTTC	3 cut(s)	224, 780, 813
HpyCH4III	ACNGT	2 cut(s)	446, 674
HpyCH4V	TGCA	4 cut(s)	167, 350, 449, 726
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 425
HpyF3I	CTNAG	5 cut(s)	90, 144, 363, 603, 855
Hsp92II	CATG	9 cut(s)	317, 340, 383, 396, 453, 686, 713, 758, 886
Kzo9I	GATC	6 cut(s)	319, 382, 388, 403, 581, 628
LguI	GCTCTTC	1 cut(s)	559
LmnI	GCTCC	1 cut(s)	702
Lsp1109I	GCAGC	2 cut(s)	167, 710
LweI	GCATC	1 cut(s)	667
MaeI	CTAG	3 cut(s)	386, 503, 593
MaeIII	GTNAC	2 cut(s)	397, 575
MalI	GATC	6 cut(s)	321, 384, 390, 405, 583, 630
MboI	GATC	6 cut(s)	319, 382, 388, 403, 581, 628
MboII	GAAGA	6 cut(s)	20, 329, 576, 608, 668, 810
MflI	RGATCY	5 cut(s)	319, 388, 403, 581, 628
MluCI	AATT	5 cut(s)	14, 64, 85, 172, 358
MlyI	GAGTC	2 cut(s)	2, 608
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	5 cut(s)	80, 482, 532, 535, 600
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	1 cut(s)	831
MspA1I	CMGCKG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	647
MvaI	CCWGG	1 cut(s)	647
MwoI	GCNNNNNNNGC	2 cut(s)	189, 425
NdeII	GATC	6 cut(s)	319, 382, 388, 403, 581, 628
NlaIII	CATG	9 cut(s)	317, 340, 383, 396, 453, 686, 713, 758, 886
NlaIV	GGNNCC	3 cut(s)	239, 289, 704
NmuCI	GTSAC	2 cut(s)	397, 575
PagI	TCATGA	1 cut(s)	379
PaqCI	CACCTGC	1 cut(s)	717
PceI	AGGCCT	1 cut(s)	802
PciSI	GCTCTTC	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	3 cut(s)	25, 259, 308
PflMI	CCANNNNNTGG	1 cut(s)	688
PfoI	TCCNGGA	1 cut(s)	645
PkrI	GCNGC	2 cut(s)	182, 725
PleI	GAGTC	2 cut(s)	2, 607
PpsI	GAGTC	2 cut(s)	2, 607
Psp6I	CCWGG	1 cut(s)	645
PspGI	CCWGG	1 cut(s)	645
PspN4I	GGNNCC	3 cut(s)	239, 289, 704
PstI	CTGCAG	1 cut(s)	728
PsuI	RGATCY	5 cut(s)	319, 388, 403, 581, 628
PvuII	CAGCTG	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	559
SaqAI	TTAA	1 cut(s)	831
SatI	GCNGC	2 cut(s)	181, 724
Sau3AI	GATC	6 cut(s)	319, 382, 388, 403, 581, 628
SchI	GAGTC	2 cut(s)	2, 608
ScrFI	CCNGG	1 cut(s)	647
SfaNI	GCATC	1 cut(s)	667
SfcI	CTRYAG	2 cut(s)	478, 724
Sse9I	AATT	5 cut(s)	14, 64, 85, 172, 358
SseBI	AGGCCT	1 cut(s)	802
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	3 cut(s)	386, 503, 593
StuI	AGGCCT	1 cut(s)	802
StyD4I	CCNGG	1 cut(s)	645
TaaI	ACNGT	2 cut(s)	446, 674
TaqI	TCGA	2 cut(s)	437, 511
TasI	AATT	5 cut(s)	14, 64, 85, 172, 358
TfiI	GAWTC	3 cut(s)	25, 259, 308
Tru1I	TTAA	1 cut(s)	831
Tru9I	TTAA	1 cut(s)	831
TscAI	CASTG	1 cut(s)	576
TseFI	GTSAC	2 cut(s)	397, 575
TseI	GCWGC	2 cut(s)	180, 723
Tsp45I	GTSAC	2 cut(s)	397, 575
TspDTI	ATGAA	8 cut(s)	17, 20, 77, 113, 330, 561, 675, 899
TspRI	CASTG	1 cut(s)	576
Van91I	CCANNNNNTGG	1 cut(s)	688
XapI	RAATTY	2 cut(s)	64, 172
XbaI	TCTAGA	2 cut(s)	385, 592
XmiI	GTMKAC	1 cut(s)	669
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	3 cut(s)	386, 503, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.