MD08G1111600.v1.1

Protein SAWADEE HOMEODOMAIN HOMOLOG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000905
Physical Location & Seq
Forward (+)
9826017 .. 9828316
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1111600.v1.1.491

Sequence Viewer

Length: 498 bp
ATGAGGGAATTGGGAGAGCAAGTGCTGGAACGAGAGTTCTGTCAAAGTACTGCAAAAAGTTTTAATCGCTCTGCAGCTCGTGCTGGGAAACCTATTGTAAAATGGACTGAGATCCCAGACGTATCAGAGTTGGAATTTGAGGCAAGGTCATCAAAAGATGGGGCATGGTATGATGTTGAAAAGTTCCTTGCTCACAGATTCCTTAGAACGGGCGAAACTGAAGTTCGTGTCAGATTTGTCGGATTCAGAGCCGAAGAGGATGAGTGGGTTAATGTGAAAAAAGCAGTGCGGGAGCGCTCCGTGCCACTGGAGCATTCAGAATGTCGTACATTGAAGGTTGGAGATCATGTCCTCTGCATCCTGGAGAGGAGAGATGAAGCAATCTACTACGATTCCCATATTTACAGATATCCAAAGGAAAATGCACGATATAAGGGGCCGCCGGTGTCTTCACAATCCGGTATAATCCCGACAACTGCAAGGAACGAGTCCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

166

Amino Acids

19.15

Weight (kDa)

6.92

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 43 - 136 1.7e-31 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 289, 440
AclWI GGATC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 2 cut(s) 49, 328
AfeI AGCGCT 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 208
AgsI TTSAA 2 cut(s) 179, 334
AjnI CCWGG 1 cut(s) 360
AloI GAACNNNNNNTCC 2 cut(s) 20, 52
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
AlwI GGATC 1 cut(s) 106
Aor51HI AGCGCT 1 cut(s) 296
AoxI GGCC 1 cut(s) 437
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 134
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 437
BauI CACGAG 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 86
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 362
BfmI CTRYAG 1 cut(s) 72
BfoI RGCGCY 1 cut(s) 298
BisI GCNGC 2 cut(s) 75, 440
BlsI GCNGC 2 cut(s) 76, 441
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 1 cut(s) 362
BmsI GCATC 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 441
BpmI CTGGAG 2 cut(s) 329, 383
BsaWI WCCGGW 1 cut(s) 458
BsaXI ACNNNNNCTCC 4 cut(s) 6, 36, 333, 363
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 362
BseGI GGATG 2 cut(s) 265, 357
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 1 cut(s) 382
BseXI GCAGC 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 83
BshFI GGCC 1 cut(s) 439
BsiSI CCGG 2 cut(s) 443, 459
BslI CCNNNNNNNGG 1 cut(s) 208
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 1 cut(s) 439
Bsp143I GATC 2 cut(s) 111, 343
BspACI CCGC 2 cut(s) 289, 440
BspANI GGCC 1 cut(s) 439
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 438
BspMAI CTGCAG 1 cut(s) 76
BspPI GGATC 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 442
BsrI ACTGG 1 cut(s) 312
BssAI RCCGGY 1 cut(s) 442
BssMI GATC 2 cut(s) 111, 343
BssSI CACGAG 1 cut(s) 78
Bst2BI CACGAG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 362
Bst6I CTCTTC 1 cut(s) 249
BstAPI GCANNNNNTGC 1 cut(s) 80
BstDEI CTNAG 2 cut(s) 108, 203
BstF5I GGATG 2 cut(s) 265, 357
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 2 cut(s) 114, 346
BstMBI GATC 2 cut(s) 111, 343
BstMWI GCNNNNNNNGC 3 cut(s) 80, 301, 310
BstNI CCWGG 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 360
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BsuRI GGCC 1 cut(s) 439
BtsCI GGATG 2 cut(s) 265, 357
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 2 cut(s) 291, 305
CfoI GCGC 1 cut(s) 297
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 437
Csp6I GTAC 2 cut(s) 48, 327
CviAII CATG 2 cut(s) 165, 347
CviJI RGCY 3 cut(s) 77, 251, 439
CviKI_1 RGCY 3 cut(s) 77, 251, 439
CviQI GTAC 2 cut(s) 48, 327
DdeI CTNAG 2 cut(s) 108, 203
DpnI GATC 2 cut(s) 113, 345
DpnII GATC 2 cut(s) 111, 343
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco32I GATATC 1 cut(s) 410
Eco47III AGCGCT 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 360
EcoRV GATATC 1 cut(s) 410
FaeI CATG 2 cut(s) 168, 350
FaiI YATR 6 cut(s) 166, 171, 348, 399, 432, 464
FatI CATG 2 cut(s) 164, 346
FauI CCCGC 1 cut(s) 282
Fnu4HI GCNGC 2 cut(s) 75, 440
FokI GGATG 2 cut(s) 272, 344
Fsp4HI GCNGC 2 cut(s) 75, 440
GlaI GCGC 1 cut(s) 296
GluI GCNGC 2 cut(s) 75, 440
GsaI CCCAGC 1 cut(s) 87
GsuI CTGGAG 2 cut(s) 329, 383
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 1 cut(s) 439
HapII CCGG 2 cut(s) 443, 459
HhaI GCGC 1 cut(s) 297
Hin1II CATG 2 cut(s) 168, 350
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HinfI GANTC 4 cut(s) 198, 243, 392, 488
HpaII CCGG 2 cut(s) 443, 459
Hpy188I TCNGA 5 cut(s) 127, 233, 242, 248, 319
Hpy188III TCNNGA 1 cut(s) 469
HpyAV CCTTC 1 cut(s) 328
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 5 cut(s) 53, 74, 357, 425, 479
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 301, 310
HpyF3I CTNAG 2 cut(s) 108, 203
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 2 cut(s) 168, 350
HspAI GCGC 1 cut(s) 295
Kzo9I GATC 2 cut(s) 111, 343
LmnI GCTCC 3 cut(s) 292, 302, 310
LpnPI CCDG 8 cut(s) 11, 69, 129, 293, 347, 374, 456, 472
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 1 cut(s) 366
MaeII ACGT 1 cut(s) 120
MalI GATC 2 cut(s) 113, 345
MboI GATC 2 cut(s) 111, 343
MboII GAAGA 2 cut(s) 266, 441
MflI RGATCY 1 cut(s) 111
MluCI AATT 2 cut(s) 8, 134
MlyI GAGTC 1 cut(s) 497
MmeI TCCRAC 3 cut(s) 111, 220, 319
MnlI CCTC 4 cut(s) 133, 250, 360, 362
MseI TTAA 2 cut(s) 63, 270
MspI CCGG 2 cut(s) 443, 459
MspR9I CCNGG 1 cut(s) 362
Mva1269I GAATGC 1 cut(s) 313
MvaI CCWGG 1 cut(s) 362
MwoI GCNNNNNNNGC 3 cut(s) 80, 301, 310
NdeII GATC 2 cut(s) 111, 343
NlaIII CATG 2 cut(s) 168, 350
NlaIV GGNNCC 1 cut(s) 438
PctI GAATGC 1 cut(s) 313
PfeI GAWTC 3 cut(s) 198, 243, 392
PfoI TCCNGGA 1 cut(s) 360
PkrI GCNGC 2 cut(s) 76, 441
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
Psp6I CCWGG 1 cut(s) 360
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 437
PstI CTGCAG 1 cut(s) 76
PsuI RGATCY 1 cut(s) 111
RsaI GTAC 2 cut(s) 49, 328
RsaNI GTAC 2 cut(s) 48, 327
SaqAI TTAA 2 cut(s) 63, 270
SatI GCNGC 2 cut(s) 75, 440
Sau3AI GATC 2 cut(s) 111, 343
Sau96I GGNCC 1 cut(s) 437
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 1 cut(s) 362
SetI ASST 5 cut(s) 79, 94, 123, 149, 339
SfaNI GCATC 1 cut(s) 366
SfcI CTRYAG 1 cut(s) 72
SgrAI CRCCGGYG 1 cut(s) 442
Sse9I AATT 2 cut(s) 8, 134
SsiI CCGC 2 cut(s) 289, 440
StyD4I CCNGG 1 cut(s) 360
TaiI ACGT 1 cut(s) 123
TasI AATT 2 cut(s) 8, 134
TatI WGTACW 1 cut(s) 47
TauI GCSGC 1 cut(s) 442
TfiI GAWTC 3 cut(s) 198, 243, 392
Tru1I TTAA 2 cut(s) 63, 270
Tru9I TTAA 2 cut(s) 63, 270
TscAI CASTG 2 cut(s) 291, 312
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 390
TspGWI ACGGA 2 cut(s) 289, 481
TspRI CASTG 2 cut(s) 291, 312
XapI RAATTY 1 cut(s) 134
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.