Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000905

Physical Location & Seq

Genomic Coordinates Reverse (-)

45839609 .. 45842993

Gene Structure 3385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0361600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAAGAGGAAGGCGGAAGTGAGCTTGGGTTCAGGCCATAAGTTGCGGAGAGGAAAGAAGATCGGCAAAGGAGGCTTGGGTTCAGGTCATAAGTGGCGGAGAGGAAAGAAGATCGGCGAAGGACGCTTCGGTTCTGTGTTCATTGCATTTTCCATGAGGCCCTATATCATCTCCAATCATATGCCGAAGGCCATGGCTATGAAATCAGCAAAGATCAAGGATTCCGATTCCATTCGATACGAGCTGGAGGTGTTTAGGGAGTTGATTAACGAGGGCGGTTCTTGCTCCTCCATCATTGAGCACTATGGTGAGGAGGTAACACGGAGTGATGAGGGTGAAGAGATCTATAACTTGGCCTTGGAAATAGCATGGGGAAGCCTTGCTAAGTTGATAGAGAAGACCGTTCATGGGTTGGGACAAAACCATGTAAGGCGGTATACCCGTGATATTCTTAAAGGTGTTGAACACATACACAAGAGTGGGTATGTCCACTGTGATTTGAAACCAGATAACATCTTGCTTTTGAAAAATGAAGATTATATTGATCAATATCTCTGTCCCTATGTGGCCAAAGTTGGTGACTTGGGGCTGGCCAAGAAGGAGGAGGAGGTTCAGGAACGCTGGAGAGGCACACCCATGTACTTGTCTCCTGAAGCTGTAGAAGACAATGTCCAAGAACGACCCAGTGACATATGGGCTGTGGGGTGTATTGTTCTGGAAATGCTTACGGGAGAGTGCCCCCGGAATCATTTCTATGATGGTGAGAGTGGTACTCTCCACATTGTTGATGGAATGGAGCCAAAAATTCCTGATACGATCTCGAGTCTTGCTAAGGATTTTCTAGAGCTTTGCCTAGCTAAGGTTCCTGAGCAAAGGTGGACAGCTGAAGAACTTCTAACAACTCATCCCTTCGTGGCAAATCTTGAATTAGATAGTGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAWADEE

Protein Analysis

314

Amino Acids

35.44

Weight (kDa)

6.09

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	33 - 304	5.4e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	35 - 299	1.5e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15215 AT1G15215 AT1G15215 AT1G15215
fragaria_vesca	FvH4_1g07250 FvH4_1g07250 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_6g32282 FvH4_6g32283
malus_domestica	MD08G1111600.v1.1 MD09G1204600.v1.1 MD15G1091100.v1.1 MD17G1184800.v1.1
prunus_persica	Prupe.1G445500_v2.0.a1 Prupe.1G445500_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1
pyrus_communis	pycom08g09270 pycom09g12150 pycom15g08510 pycom17g19430
rosa_chinensis	RchiOBHm_Chr2g0140241 RchiOBHm_Chr4g0409031 RchiOBHm_Chr5g0076021 RchiOBHm_Chr5g0078201 RchiOBHm_Chr6g0306581
rosa_laevigata	RLG00000010783 RLG00000019858
rosa_multiflora	Rmu_sc0005446.1_g000009
rosa_roxburghii	Rroxscaffold_1G00035110 Rroxscaffold_2G00082850 Rroxscaffold_2G00104960 Rroxscaffold_3G00232630 Rroxscaffold_5G00355740 Rroxscaffold_5G00365450 Rroxscaffold_5G00380960 Rroxscaffold_7G00161650
rosa_rugosa	Rorug02G0361600 Rorug02G0361700 Rorug02G0361700 Rorug02G0361700 Rorug05G0290900 Rorug05G0291000 Rorug06G0350500 Rorug06G0350600
rosa_samantha	Rh2AG412500 Rh2BG422800 Rh2CG398700 Rh2CG405000 Rh2DG432100 Rh4CG272400 Rh5AG500700 Rh5CG321900 Rh6AG463000 Rh6BG437900 Rh6CG477200 Rh6DG463800
rosa_wichuraiana	Rw2G033810 Rw5G047830 Rw6G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	437
AciI	CCGC	5 cut(s)	14, 46, 97, 276, 433
AcoI	YGGCCR	2 cut(s)	567, 591
AcsI	RAATTY	1 cut(s)	804
AcuI	CTGAAG	2 cut(s)	672, 906
AdeI	CACNNNGTG	1 cut(s)	326
AfaI	GTAC	2 cut(s)	641, 772
AfiI	CCNNNNNNNGG	2 cut(s)	408, 859
AgsI	TTSAA	4 cut(s)	464, 502, 526, 926
AleI	CACNNNNGTG	2 cut(s)	306, 477
AluBI	AGCT	6 cut(s)	24, 244, 656, 847, 857, 884
AluI	AGCT	6 cut(s)	24, 244, 656, 847, 857, 884
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	651
Ama87I	CYCGRG	1 cut(s)	820
AoxI	GGCC	6 cut(s)	34, 158, 189, 354, 567, 591
ApoI	RAATTY	1 cut(s)	804
Asp700I	GAANNNNTTC	2 cut(s)	749, 891
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	742
AsuHPI	GGTGA	4 cut(s)	320, 347, 590, 773
AvaI	CYCGRG	1 cut(s)	820
BaeGI	GKGCMC	1 cut(s)	740
BalI	TGGCCA	2 cut(s)	569, 593
BbsI	GAAGAC	2 cut(s)	404, 669
Bbv12I	GWGCWC	1 cut(s)	303
BccI	CCATC	3 cut(s)	299, 752, 782
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	742
BcoDI	GTCTC	1 cut(s)	651
BfaI	CTAG	2 cut(s)	842, 854
BfmI	CTRYAG	1 cut(s)	657
BglII	AGATCT	1 cut(s)	342
Bme1390I	CCNGG	1 cut(s)	742
BmeT110I	CYCGRG	1 cut(s)	820
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	798, 864
BmrFI	CCNGG	1 cut(s)	742
BmrI	ACTGGG	1 cut(s)	678
BmuI	ACTGGG	1 cut(s)	678
BpiI	GAAGAC	2 cut(s)	404, 669
BplI	GAGNNNNNCTC	2 cut(s)	757, 789
BpmI	CTGGAG	2 cut(s)	266, 643
Bpu10I	CCTNAGC	3 cut(s)	831, 858, 867
BpuMI	CCSGG	1 cut(s)	742
BsaBI	GATNNNNATC	1 cut(s)	549
BsaJI	CCNNGG	3 cut(s)	192, 357, 740
Bsc4I	CCNNNNNNNGG	2 cut(s)	408, 859
Bse1I	ACTGG	1 cut(s)	684
Bse3DI	GCAATG	1 cut(s)	141
Bse8I	GATNNNNATC	1 cut(s)	549
BseDI	CCNNGG	3 cut(s)	192, 357, 740
BseGI	GGATG	1 cut(s)	904
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	2 cut(s)	408, 859
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	858
BseNI	ACTGG	1 cut(s)	684
BseRI	GAGGAG	4 cut(s)	277, 326, 617, 620
BseSI	GKGCMC	1 cut(s)	740
BshFI	GGCC	6 cut(s)	36, 160, 191, 356, 569, 593
BsiHKAI	GWGCWC	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	820
BsiSI	CCGG	1 cut(s)	742
BslFI	GGGAC	2 cut(s)	429, 543
BslI	CCNNNNNNNGG	2 cut(s)	408, 859
BsmAI	GTCTC	1 cut(s)	651
BsmFI	GGGAC	2 cut(s)	429, 543
BsnI	GGCC	6 cut(s)	36, 160, 191, 356, 569, 593
BsoBI	CYCGRG	1 cut(s)	820
Bsp1286I	GDGCHC	2 cut(s)	303, 740
Bsp143I	GATC	6 cut(s)	60, 111, 213, 342, 544, 816
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	5 cut(s)	14, 46, 97, 276, 433
BspANI	GGCC	6 cut(s)	36, 160, 191, 356, 569, 593
BspCNI	CTCAG	1 cut(s)	859
BspLI	GGNNCC	2 cut(s)	798, 864
BsrDI	GCAATG	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	684
BssECI	CCNNGG	3 cut(s)	192, 357, 740
BssMI	GATC	6 cut(s)	60, 111, 213, 342, 544, 816
BssNAI	GTATAC	1 cut(s)	438
BssT1I	CCWWGG	2 cut(s)	192, 357
Bst1107I	GTATAC	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	403, 494
Bst6I	CTCTTC	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	4 cut(s)	384, 831, 858, 867
BstDSI	CCRYGG	1 cut(s)	192
BstENI	CCTNNNNNAGG	1 cut(s)	857
BstF5I	GGATG	1 cut(s)	904
BstKTI	GATC	6 cut(s)	63, 114, 216, 345, 547, 819
BstMAI	GTCTC	1 cut(s)	651
BstMBI	GATC	6 cut(s)	60, 111, 213, 342, 544, 816
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 123, 282, 627
BstSCI	CCNGG	1 cut(s)	740
BstSFI	CTRYAG	1 cut(s)	657
BstSLI	GKGCMC	1 cut(s)	740
BstV2I	GAAGAC	2 cut(s)	404, 669
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
BstZ17I	GTATAC	1 cut(s)	438
BsuRI	GGCC	6 cut(s)	36, 160, 191, 356, 569, 593
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	904
BtsIMutI	CAGTG	2 cut(s)	490, 691
Cac8I	GCNNGC	1 cut(s)	591
Cfr13I	GGNCC	1 cut(s)	159
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	2 cut(s)	640, 771
CviAII	CATG	6 cut(s)	154, 193, 369, 407, 425, 637
CviQI	GTAC	2 cut(s)	640, 771
DdeI	CTNAG	4 cut(s)	384, 831, 858, 867
DpnI	GATC	6 cut(s)	62, 113, 215, 344, 546, 818
DpnII	GATC	6 cut(s)	60, 111, 213, 342, 544, 816
DraIII	CACNNNGTG	1 cut(s)	326
EaeI	YGGCCR	2 cut(s)	567, 591
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	2 cut(s)	29, 112
Eco130I	CCWWGG	2 cut(s)	192, 357
Eco57I	CTGAAG	2 cut(s)	672, 906
Eco88I	CYCGRG	1 cut(s)	820
EcoNI	CCTNNNNNAGG	1 cut(s)	857
EcoO109I	RGGNCCY	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	192, 357
ErhI	CCWWGG	2 cut(s)	192, 357
FaeI	CATG	6 cut(s)	157, 196, 372, 410, 428, 640
FaqI	GGGAC	2 cut(s)	429, 543
FatI	CATG	6 cut(s)	153, 192, 368, 406, 424, 636
FauNDI	CATATG	2 cut(s)	180, 692
FbaI	TGATCA	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	437
FokI	GGATG	1 cut(s)	891
FspBI	CTAG	2 cut(s)	842, 854
GsuI	CTGGAG	2 cut(s)	266, 643
HaeIII	GGCC	6 cut(s)	36, 160, 191, 356, 569, 593
HapII	CCGG	1 cut(s)	742
HgaI	GACGC	1 cut(s)	132
Hin1II	CATG	6 cut(s)	157, 196, 372, 410, 428, 640
HinfI	GANTC	4 cut(s)	221, 227, 745, 823
HpaII	CCGG	1 cut(s)	742
HphI	GGTGA	4 cut(s)	320, 347, 590, 773
Hpy166II	GTNNAC	3 cut(s)	438, 490, 879
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	8 cut(s)	614, 650, 716, 809, 820, 842, 866, 923
Hpy8I	GTNNAC	3 cut(s)	438, 490, 879
HpyAV	CCTTC	5 cut(s)	4, 113, 181, 592, 919
HpyCH4III	ACNGT	2 cut(s)	403, 494
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 123, 282, 627
HpyF3I	CTNAG	4 cut(s)	384, 831, 858, 867
Hsp92II	CATG	6 cut(s)	157, 196, 372, 410, 428, 640
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	6 cut(s)	60, 111, 213, 342, 544, 816
LmnI	GCTCC	2 cut(s)	290, 796
MaeI	CTAG	2 cut(s)	842, 854
MaeIII	GTNAC	3 cut(s)	316, 578, 686
MalI	GATC	6 cut(s)	62, 113, 215, 344, 546, 818
MboI	GATC	6 cut(s)	60, 111, 213, 342, 544, 816
MboII	GAAGA	8 cut(s)	16, 70, 121, 350, 409, 545, 674, 899
MflI	RGATCY	1 cut(s)	342
MhlI	GDGCHC	2 cut(s)	303, 740
MlsI	TGGCCA	2 cut(s)	569, 593
MluCI	AATT	3 cut(s)	804, 926, 940
MluNI	TGGCCA	2 cut(s)	569, 593
MlyI	GAGTC	1 cut(s)	832
Mox20I	TGGCCA	2 cut(s)	569, 593
MroXI	GAANNNNTTC	2 cut(s)	749, 891
MscI	TGGCCA	2 cut(s)	569, 593
MseI	TTAA	2 cut(s)	267, 453
MslI	CAYNNNNRTG	5 cut(s)	197, 306, 477, 635, 753
Msp20I	TGGCCA	2 cut(s)	569, 593
MspA1I	CMGCKG	1 cut(s)	884
MspI	CCGG	1 cut(s)	742
MspR9I	CCNGG	1 cut(s)	742
MwoI	GCNNNNNNNGC	4 cut(s)	72, 123, 282, 627
NciI	CCSGG	1 cut(s)	742
NcoI	CCATGG	1 cut(s)	192
NdeI	CATATG	2 cut(s)	180, 692
NdeII	GATC	6 cut(s)	60, 111, 213, 342, 544, 816
NlaIII	CATG	6 cut(s)	157, 196, 372, 410, 428, 640
NlaIV	GGNNCC	2 cut(s)	798, 864
NmuCI	GTSAC	2 cut(s)	578, 686
OliI	CACNNNNGTG	2 cut(s)	306, 477
PaeR7I	CTCGAG	1 cut(s)	820
PdmI	GAANNNNTTC	2 cut(s)	749, 891
PfeI	GAWTC	3 cut(s)	221, 227, 745
PflFI	GACNNNGTC	1 cut(s)	668
PleI	GAGTC	1 cut(s)	831
PpsI	GAGTC	1 cut(s)	831
PspN4I	GGNNCC	2 cut(s)	798, 864
PspPI	GGNCC	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	342
PsyI	GACNNNGTC	1 cut(s)	668
PvuII	CAGCTG	1 cut(s)	884
RsaI	GTAC	2 cut(s)	641, 772
RsaNI	GTAC	2 cut(s)	640, 771
RseI	CAYNNNNRTG	5 cut(s)	197, 306, 477, 635, 753
SaqAI	TTAA	2 cut(s)	267, 453
Sau3AI	GATC	6 cut(s)	60, 111, 213, 342, 544, 816
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	1 cut(s)	832
ScrFI	CCNGG	1 cut(s)	742
SduI	GDGCHC	2 cut(s)	303, 740
SfcI	CTRYAG	1 cut(s)	657
Sfr274I	CTCGAG	1 cut(s)	820
SlaI	CTCGAG	1 cut(s)	820
SmiMI	CAYNNNNRTG	5 cut(s)	197, 306, 477, 635, 753
SmlI	CTYRAG	1 cut(s)	820
SmoI	CTYRAG	1 cut(s)	820
Sse9I	AATT	3 cut(s)	804, 926, 940
SsiI	CCGC	5 cut(s)	14, 46, 97, 276, 433
SspMI	CTAG	2 cut(s)	842, 854
StyD4I	CCNGG	1 cut(s)	740
StyI	CCWWGG	2 cut(s)	192, 357
TaaI	ACNGT	2 cut(s)	403, 494
TaqI	TCGA	2 cut(s)	235, 821
TasI	AATT	3 cut(s)	804, 926, 940
TatI	WGTACW	1 cut(s)	639
TfiI	GAWTC	3 cut(s)	221, 227, 745
Tru1I	TTAA	2 cut(s)	267, 453
Tru9I	TTAA	2 cut(s)	267, 453
TscAI	CASTG	2 cut(s)	497, 691
TseFI	GTSAC	2 cut(s)	578, 686
Tsp45I	GTSAC	2 cut(s)	578, 686
TspDTI	ATGAA	5 cut(s)	17, 130, 215, 395, 546
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	2 cut(s)	497, 691
Tth111I	GACNNNGTC	1 cut(s)	668
XagI	CCTNNNNNAGG	1 cut(s)	857
XapI	RAATTY	1 cut(s)	804
XbaI	TCTAGA	1 cut(s)	841
XcmI	CCANNNNNNNNNTGG	1 cut(s)	785
XhoI	CTCGAG	1 cut(s)	820
XmiI	GTMKAC	1 cut(s)	437
XmnI	GAANNNNTTC	2 cut(s)	749, 891
XspI	CTAG	2 cut(s)	842, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.