Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000905

Physical Location & Seq

Genomic Coordinates Forward (+)

21873805 .. 21875956

Gene Structure 2152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1184800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCTGATTTGTTATTACGTTTTCTGAAAATTGTACTTGATAACTTTGACTCAGGTAAATGGGTAACAGAACTTTCAGAGTTGGCATTTGAAGCAAAATCATCGAAAGATGATGCATGGTATGATGTTGCTACATTCCTCTCATACAGAGTAGTCAGTTCAGGAGACCTTGAAGTTAAAGTGCGATTTTCCGGATTTGGTAGGGAGGAAGATGAGTGGGTGGATGTGAGAGGTGCAGTGCGTGAGCGATCTATTCCTTTGGAAGCTTCTGAGTGTCCGAAGGTGAAGGTTGGGGACCTAGTGCTATGCTTCCAGGAAAGAGAACATCAAGCTGTATACTGTGATGCTGAAGTTGTGGTCATTCACCGGGGGCTACATGACATGAACGGTGCCTGCAAGTGTACCTTCGTTGTTCGCTTTGACCATGATAGCTCCGAGGAACATATTGATCTGGGGAGGTTATGTATCAGGCCTGCACAAAGCACTTCAACAAATACTAAAACCCAACCGGAGCTCTTTCGAAACAGGGACATGAAAATCTCTTTTCTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAWADEE

Protein Analysis

185

Amino Acids

21.09

Weight (kDa)

5.17

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAWADEE	PF16719	27 - 155	3.4e-43	SAWADEE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15215 AT1G15215 AT1G15215 AT1G15215
fragaria_vesca	FvH4_1g07250 FvH4_1g07250 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_6g32282 FvH4_6g32283
malus_domestica	MD08G1111600.v1.1 MD09G1204600.v1.1 MD15G1091100.v1.1 MD17G1184800.v1.1
prunus_persica	Prupe.1G445500_v2.0.a1 Prupe.1G445500_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1
pyrus_communis	pycom08g09270 pycom09g12150 pycom15g08510 pycom17g19430
rosa_chinensis	RchiOBHm_Chr2g0140241 RchiOBHm_Chr4g0409031 RchiOBHm_Chr5g0076021 RchiOBHm_Chr5g0078201 RchiOBHm_Chr6g0306581
rosa_laevigata	RLG00000010783 RLG00000019858
rosa_multiflora	Rmu_sc0005446.1_g000009
rosa_roxburghii	Rroxscaffold_1G00035110 Rroxscaffold_2G00082850 Rroxscaffold_2G00104960 Rroxscaffold_3G00232630 Rroxscaffold_5G00355740 Rroxscaffold_5G00365450 Rroxscaffold_5G00380960 Rroxscaffold_7G00161650
rosa_rugosa	Rorug02G0361600 Rorug02G0361700 Rorug02G0361700 Rorug02G0361700 Rorug05G0290900 Rorug05G0291000 Rorug06G0350500 Rorug06G0350600
rosa_samantha	Rh2AG412500 Rh2BG422800 Rh2CG398700 Rh2CG405000 Rh2DG432100 Rh4CG272400 Rh5AG500700 Rh5CG321900 Rh6AG463000 Rh6BG437900 Rh6CG477200 Rh6DG463800
rosa_wichuraiana	Rw2G033810 Rw5G047830 Rw6G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	389
AccI	GTMKAC	1 cut(s)	336
AccIII	TCCGGA	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	2 cut(s)	36, 403
AgsI	TTSAA	3 cut(s)	92, 173, 489
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	4 cut(s)	266, 332, 432, 514
AluI	AGCT	4 cut(s)	266, 332, 432, 514
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	1 cut(s)	159
Aor13HI	TCCGGA	1 cut(s)	191
AoxI	GGCC	1 cut(s)	470
AspS9I	GGNCC	1 cut(s)	295
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	2 cut(s)	295, 356
AsuII	TTCGAA	1 cut(s)	520
AvaII	GGWCC	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	516
Bbv12I	GWGCWC	1 cut(s)	516
BcgI	CGANNNNNNTGC	2 cut(s)	84, 118
BciT130I	CCWGG	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	299
Bme1390I	CCNGG	2 cut(s)	314, 368
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	296, 391
BmrFI	CCNGG	2 cut(s)	314, 368
BmsI	GCATC	2 cut(s)	103, 334
Bpu14I	TTCGAA	1 cut(s)	520
BpuMI	CCSGG	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	367, 435
BsaWI	WCCGGW	2 cut(s)	191, 508
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
BseAI	TCCGGA	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	367, 435
BseGI	GGATG	1 cut(s)	229
BseMII	CTCAG	2 cut(s)	66, 261
BsgI	GTGCAG	2 cut(s)	255, 459
BshFI	GGCC	1 cut(s)	472
BshNI	GGYRCC	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	516
BsiSI	CCGG	3 cut(s)	192, 367, 509
BslFI	GGGAC	2 cut(s)	308, 542
BsmAI	GTCTC	1 cut(s)	159
BsmFI	GGGAC	2 cut(s)	308, 542
BsnI	GGCC	1 cut(s)	472
Bso31I	GGTCTC	1 cut(s)	159
Bsp119I	TTCGAA	1 cut(s)	520
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp13I	TCCGGA	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	248, 448
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	2 cut(s)	65, 262
BspEI	TCCGGA	1 cut(s)	191
BspLI	GGNNCC	2 cut(s)	296, 391
BspT104I	TTCGAA	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	367, 435
BssMI	GATC	2 cut(s)	248, 448
BssNAI	GTATAC	1 cut(s)	337
Bst1107I	GTATAC	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	2 cut(s)	341, 389
BstBI	TTCGAA	1 cut(s)	520
BstC8I	GCNNGC	2 cut(s)	394, 474
BstDEI	CTNAG	2 cut(s)	52, 270
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	2 cut(s)	251, 451
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	2 cut(s)	248, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	312, 366
BstZ17I	GTATAC	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	472
BtsCI	GGATG	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	2 cut(s)	394, 474
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	2 cut(s)	35, 402
CviAII	CATG	5 cut(s)	117, 377, 382, 425, 532
CviJI	RGCY	6 cut(s)	266, 332, 373, 432, 472, 514
CviKI_1	RGCY	6 cut(s)	266, 332, 373, 432, 472, 514
CviQI	GTAC	2 cut(s)	35, 402
DdeI	CTNAG	2 cut(s)	52, 270
DpnI	GATC	2 cut(s)	250, 450
DpnII	GATC	2 cut(s)	248, 448
Ecl136II	GAGCTC	1 cut(s)	514
Eco147I	AGGCCT	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	516
Eco31I	GGTCTC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	514
Eco57I	CTGAAG	1 cut(s)	369
EcoICRI	GAGCTC	1 cut(s)	514
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	312
EcoT22I	ATGCAT	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	516
FaeI	CATG	5 cut(s)	120, 380, 385, 428, 535
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FaqI	GGGAC	2 cut(s)	308, 542
FatI	CATG	5 cut(s)	116, 376, 381, 424, 531
FblI	GTMKAC	1 cut(s)	336
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	516
FspBI	CTAG	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	472
HapII	CCGG	3 cut(s)	192, 367, 509
Hin1II	CATG	5 cut(s)	120, 380, 385, 428, 535
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	1 cut(s)	50
HpaII	CCGG	3 cut(s)	192, 367, 509
HphI	GGTGA	2 cut(s)	295, 356
Hpy166II	GTNNAC	2 cut(s)	337, 402
Hpy188I	TCNGA	6 cut(s)	7, 27, 79, 271, 279, 436
Hpy188III	TCNNGA	2 cut(s)	162, 192
Hpy8I	GTNNAC	2 cut(s)	337, 402
HpyAV	CCTTC	3 cut(s)	274, 280, 415
HpyCH4III	ACNGT	2 cut(s)	341, 389
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	4 cut(s)	116, 236, 396, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	52, 270
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	5 cut(s)	120, 380, 385, 428, 535
Kpn2I	TCCGGA	1 cut(s)	191
Kzo9I	GATC	2 cut(s)	248, 448
LmnI	GCTCC	2 cut(s)	437, 511
LweI	GCATC	2 cut(s)	103, 334
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	2 cut(s)	250, 450
MboI	GATC	2 cut(s)	248, 448
MboII	GAAGA	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	5 cut(s)	149, 199, 224, 430, 450
Mph1103I	ATGCAT	1 cut(s)	118
MroI	TCCGGA	1 cut(s)	191
MseI	TTAA	1 cut(s)	177
MspI	CCGG	3 cut(s)	192, 367, 509
MspR9I	CCNGG	2 cut(s)	314, 368
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	92
NciI	CCSGG	1 cut(s)	368
NdeII	GATC	2 cut(s)	248, 448
NlaIII	CATG	5 cut(s)	120, 380, 385, 428, 535
NlaIV	GGNNCC	2 cut(s)	296, 391
NsiI	ATGCAT	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	520
PceI	AGGCCT	1 cut(s)	472
PfoI	TCCNGGA	1 cut(s)	312
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PpuMI	RGGWCCY	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	516
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	296, 391
PspPI	GGNCC	1 cut(s)	295
PspPPI	RGGWCCY	1 cut(s)	295
RsaI	GTAC	2 cut(s)	36, 403
RsaNI	GTAC	2 cut(s)	35, 402
SacI	GAGCTC	1 cut(s)	516
SaqAI	TTAA	1 cut(s)	177
Sau3AI	GATC	2 cut(s)	248, 448
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	314, 368
SduI	GDGCHC	1 cut(s)	516
SfaNI	GCATC	2 cut(s)	103, 334
SfuI	TTCGAA	1 cut(s)	520
SinI	GGWCC	1 cut(s)	295
Sse9I	AATT	1 cut(s)	30
SseBI	AGGCCT	1 cut(s)	472
SspMI	CTAG	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	516
StuI	AGGCCT	1 cut(s)	472
StyD4I	CCNGG	2 cut(s)	312, 366
TaaI	ACNGT	2 cut(s)	341, 389
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	104, 520
TasI	AATT	1 cut(s)	30
TatI	WGTACW	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	243
TspDTI	ATGAA	2 cut(s)	398, 548
TspRI	CASTG	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	336
XspI	CTAG	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.