Rroxscaffold_5G00365450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000905
Physical Location & Seq
Forward (+)
47021785 .. 47022117
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00365450.1

Sequence Viewer

Length: 333 bp
ATGCTTCCCGCCGCCACCGCCTCGGACCCGCCTCCCCGGCATCGCCGCCTCACGCCGATCCTCCCTCCGGTGTCACCGTGCCCCACCGCGCCTCCAAGTACGGATCGAAGCCACCTCGGATCCTTTCGACCCGACCCGGCCGGAAAACGACTTTTCGTGCGGTGCACGGCCGATCGTTCCCATTTTCGTGATCCCCTCCTCCCCTTGATCATCCCCATACCCTCCTTGCTTGACGATTTTGAGTGTGGAGCGAAAGATCAAGGATTGAAGCCAACGGTTCTGGTTGAATCGACCAAATCGGACGGCCACGATAAATCCAACTTCAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.96

Weight (kDa)

8.99

Isoelectric Point (pI)

55.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 89
AciI CCGC 7 cut(s) 9, 12, 18, 29, 46, 87, 160
AclWI GGATC 5 cut(s) 52, 111, 114, 127, 185
AcoI YGGCCR 3 cut(s) 138, 168, 304
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 3 cut(s) 268, 287, 325
Alw21I GWGCWC 1 cut(s) 167
Alw44I GTGCAC 1 cut(s) 163
AlwI GGATC 5 cut(s) 52, 111, 114, 127, 185
AoxI GGCC 3 cut(s) 138, 168, 304
ApaLI GTGCAC 1 cut(s) 163
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 2 cut(s) 37, 137
AsuHPI GGTGA 1 cut(s) 66
AvaII GGWCC 1 cut(s) 25
BaeGI GKGCMC 2 cut(s) 83, 167
BamHI GGATCC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 167
BceAI ACGGC 2 cut(s) 183, 319
BclI TGATCA 1 cut(s) 207
BcnI CCSGG 2 cut(s) 37, 137
BglI GCCNNNNNGGC 1 cut(s) 37
BisI GCNGC 2 cut(s) 12, 46
BlsI GCNGC 2 cut(s) 13, 47
Bme1390I CCNGG 2 cut(s) 37, 137
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 2 cut(s) 27, 121
BmrFI CCNGG 2 cut(s) 37, 137
BmsI GCATC 1 cut(s) 49
BpuMI CCSGG 2 cut(s) 37, 137
BsaJI CCNNGG 3 cut(s) 21, 35, 115
BsaWI WCCGGW 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 1 cut(s) 67
BseDI CCNNGG 3 cut(s) 21, 35, 115
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 67
BseRI GAGGAG 1 cut(s) 188
BseSI GKGCMC 2 cut(s) 83, 167
BseX3I CGGCCG 2 cut(s) 138, 168
Bsh1236I CGCG 1 cut(s) 89
Bsh1285I CGRYCG 3 cut(s) 141, 171, 175
BshFI GGCC 3 cut(s) 140, 170, 306
BsiEI CGRYCG 3 cut(s) 141, 171, 175
BsiHKAI GWGCWC 1 cut(s) 167
BsiSI CCGG 4 cut(s) 37, 68, 137, 141
BslI CCNNNNNNNGG 1 cut(s) 67
BsnI GGCC 3 cut(s) 140, 170, 306
Bsp1286I GDGCHC 2 cut(s) 83, 167
Bsp143I GATC 7 cut(s) 57, 103, 119, 172, 190, 207, 256
BspACI CCGC 7 cut(s) 9, 12, 18, 29, 46, 87, 160
BspANI GGCC 3 cut(s) 140, 170, 306
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 2 cut(s) 27, 121
BspPI GGATC 5 cut(s) 52, 111, 114, 127, 185
BssECI CCNNGG 3 cut(s) 21, 35, 115
BssMI GATC 7 cut(s) 57, 103, 119, 172, 190, 207, 256
Bst4CI ACNGT 2 cut(s) 78, 277
BstF5I GGATG 1 cut(s) 210
BstFNI CGCG 1 cut(s) 89
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 7 cut(s) 60, 106, 122, 175, 193, 210, 259
BstMBI GATC 7 cut(s) 57, 103, 119, 172, 190, 207, 256
BstMCI CGRYCG 3 cut(s) 141, 171, 175
BstMWI GCNNNNNNNGC 2 cut(s) 17, 37
BstSCI CCNGG 2 cut(s) 35, 135
BstSLI GKGCMC 2 cut(s) 83, 167
BstUI CGCG 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BstZI CGGCCG 2 cut(s) 138, 168
BsuRI GGCC 3 cut(s) 140, 170, 306
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 1 cut(s) 210
CfoI GCGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 25
Csp6I GTAC 1 cut(s) 99
CviJI RGCY 6 cut(s) 111, 140, 170, 271, 306, 329
CviKI_1 RGCY 6 cut(s) 111, 140, 170, 271, 306, 329
CviQI GTAC 1 cut(s) 99
DpnI GATC 7 cut(s) 59, 105, 121, 174, 192, 209, 258
DpnII GATC 7 cut(s) 57, 103, 119, 172, 190, 207, 256
EaeI YGGCCR 3 cut(s) 138, 168, 304
EagI CGGCCG 2 cut(s) 138, 168
EclXI CGGCCG 2 cut(s) 138, 168
Eco47I GGWCC 1 cut(s) 25
Eco52I CGGCCG 2 cut(s) 138, 168
FaiI YATR 1 cut(s) 218
FauI CCCGC 2 cut(s) 16, 36
FbaI TGATCA 1 cut(s) 207
Fnu4HI GCNGC 2 cut(s) 12, 46
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 2 cut(s) 12, 46
GlaI GCGC 1 cut(s) 90
GluI GCNGC 2 cut(s) 12, 46
HaeIII GGCC 3 cut(s) 140, 170, 306
HapII CCGG 4 cut(s) 37, 68, 137, 141
HhaI GCGC 1 cut(s) 91
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HinfI GANTC 1 cut(s) 287
HpaII CCGG 4 cut(s) 37, 68, 137, 141
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 3 cut(s) 25, 119, 301
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 1 cut(s) 165
HpyCH4III ACNGT 2 cut(s) 78, 277
HpyCH4V TGCA 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 37
HspAI GCGC 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 7 cut(s) 57, 103, 119, 172, 190, 207, 256
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 5 cut(s) 50, 81, 150, 154, 266
LweI GCATC 1 cut(s) 49
MaeIII GTNAC 1 cut(s) 72
MalI GATC 7 cut(s) 59, 105, 121, 174, 192, 209, 258
MboI GATC 7 cut(s) 57, 103, 119, 172, 190, 207, 256
MflI RGATCY 1 cut(s) 119
MhlI GDGCHC 2 cut(s) 83, 167
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 4 cut(s) 37, 68, 137, 141
MspR9I CCNGG 2 cut(s) 37, 137
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 17, 37
NciI CCSGG 2 cut(s) 37, 137
NdeII GATC 7 cut(s) 57, 103, 119, 172, 190, 207, 256
NlaIV GGNNCC 2 cut(s) 27, 121
NmuCI GTSAC 1 cut(s) 72
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 2 cut(s) 13, 47
Ple19I CGATCG 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 27, 121
PspPI GGNCC 1 cut(s) 25
PsuI RGATCY 1 cut(s) 119
PvuI CGATCG 1 cut(s) 175
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 186
SatI GCNGC 2 cut(s) 12, 46
Sau3AI GATC 7 cut(s) 57, 103, 119, 172, 190, 207, 256
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 2 cut(s) 37, 137
SduI GDGCHC 2 cut(s) 83, 167
SetI ASST 1 cut(s) 117
SfaNI GCATC 1 cut(s) 49
SinI GGWCC 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 186
SsiI CCGC 7 cut(s) 9, 12, 18, 29, 46, 87, 160
StyD4I CCNGG 2 cut(s) 35, 135
TaaI ACNGT 2 cut(s) 78, 277
TaqI TCGA 3 cut(s) 106, 127, 290
TauI GCSGC 2 cut(s) 14, 48
TfiI GAWTC 1 cut(s) 287
TseFI GTSAC 1 cut(s) 72
Tsp45I GTSAC 1 cut(s) 72
TspGWI ACGGA 1 cut(s) 116
VneI GTGCAC 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.