RchiOBHm_Chr5g0076021

lysine-specific demethylase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
81760520 .. 81761230
711 bp
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UTR
Exon/CDS
Intron
PRQ35071

Sequence Viewer

Length: 210 bp
ATGCTTTGCAACTCAAGCCAGGTTGATCTTGACAATGTAGATGAGAGAGAATTTCCGGAGGTGAAGGACTTACAATTTCTTGACTGCATATTAGAGGAAGGTGAGATGCTTTATATCCCACCAAAGTGGTGGCACTATGTGCGGTCTCTGACAACAAGTATGTCAGTTAGCTTTTGGTGGAGTGATTATGACAGTTCAGCTACGTCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

8.17

Weight (kDa)

4.05

Isoelectric Point (pI)

58.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_8 PF13621 4 - 62 2.3e-18 Cupin-like domain
JmjC_2 PF08007 12 - 58 6.5e-09 JmjC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 1 cut(s) 142
AcsI RAATTY 1 cut(s) 50
AdeI CACNNNGTG 1 cut(s) 139
AjnI CCWGG 1 cut(s) 18
AleI CACNNNNGTG 1 cut(s) 124
AluBI AGCT 2 cut(s) 171, 200
AluI AGCT 2 cut(s) 171, 200
Alw26I GTCTC 1 cut(s) 150
Aor13HI TCCGGA 1 cut(s) 55
ApoI RAATTY 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 73, 113
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 20
BmsI GCATC 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 55
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 1 cut(s) 20
BsiSI CCGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 150
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 1 cut(s) 142
BspEI TCCGGA 1 cut(s) 55
BspTNI GGTCTC 1 cut(s) 150
BssMI GATC 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 139
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 2 cut(s) 15, 139
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstXI CCANNNNNNTGG 2 cut(s) 126, 129
CviJI RGCY 3 cut(s) 18, 171, 200
CviKI_1 RGCY 3 cut(s) 18, 171, 200
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
DraIII CACNNNGTG 1 cut(s) 139
Eco31I GGTCTC 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 18
FaiI YATR 5 cut(s) 89, 114, 138, 161, 189
HapII CCGG 1 cut(s) 56
HpaII CCGG 1 cut(s) 56
HphI GGTGA 2 cut(s) 73, 113
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 4 cut(s) 29, 56, 80, 207
HpyAV CCTTC 2 cut(s) 58, 92
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 2 cut(s) 9, 87
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 139
HpySE526I ACGT 1 cut(s) 203
Kpn2I TCCGGA 1 cut(s) 55
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 3 cut(s) 5, 32, 69
LweI GCATC 1 cut(s) 96
MaeII ACGT 1 cut(s) 203
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MluCI AATT 2 cut(s) 50, 74
MnlI CCTC 2 cut(s) 52, 88
MroI TCCGGA 1 cut(s) 55
MslI CAYNNNNRTG 1 cut(s) 124
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 15, 139
NdeII GATC 1 cut(s) 25
OliI CACNNNNGTG 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 124
Sau3AI GATC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 20
SetI ASST 6 cut(s) 24, 63, 103, 173, 202, 206
SfaNI GCATC 1 cut(s) 96
SgeI CNNG 7 cut(s) 27, 31, 32, 41, 68, 92, 168
SmiMI CAYNNNNRTG 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 2 cut(s) 50, 74
SsiI CCGC 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 1 cut(s) 206
TasI AATT 2 cut(s) 50, 74
XapI RAATTY 1 cut(s) 50
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.