Rroxscaffold_3G00232630

Prenyltransferase and squalene oxidase repeat

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
18282691 .. 18286025
3335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00232630.1

Sequence Viewer

Length: 948 bp
ATGCCTAATTCCCAGCTTCGAAGGTTCAGCGAAGTGATCTTGGCGCCGCTCGTGGCGGCTAATGATCGTGATCCGGGTGAGCCGGGGCTCGCCGATAGCTGGTATTACTTGTGTTTCCGTAGCTATGCAGTTTTGCAGTTTTTAAAATTGATGGGGGAGCTGGCATCTCAGAAACATGTTCGATTTATTCTATCAAAAGCACAGGAGAAGGACTCTTATGAGTCAGTTTTGATGGAGCATATAAGAATGAATGGTGCTTACTGGGTTTTGACGACTCTTGATCTTCTTGGAAAGCTTGATACTGTGGATGTCAATGAGGTTTTGGCCTTATTTGACAAGGTTGATGTTTTGGATGTTGAAAGGGTTGCAGATTGTATCCTTCAGGATATCTATTTATTCAACTCAAGTAGATCTTCAGTACCTTTTCAATTGGTGAATGGTACTAGAAAAGTTGTTTTGCCTTGTGTTGAGAGGCTAAATCAGAGCTCATTGAAGGATGTAGCTGGGCTGCAAAATGAAGATGGATCATTTTCAAGGGACATGTGGGGTGAAGTTGATACACGTCCCTCCGAAACCTCCGTTCTCTCTCCTCCCTACGTCTTCGACCCGGCCGACCCGACCCGGCTCCATCTTCCACCTCCAGCCACCTCCGGCCACGACCCGCCCTCCCCACACCTGCACGGAGCCGCCTGGGCGACCGGTGGTGTTGCCTTGCTCCGCCGCCGCCCACAAAGCCGGATCGAAGCGGCCCCGGATGTGCGAAACCCGACCCGGCCGGAAAACCTTGACGCCGGCGTTGCATGGGCCGATCCTTCCCACCATGGTGATCTCCTCCTCTTGCCGATCATCCCCATGCCCTCCTTGCTTGACGATTTTGAGTGTGGAGCGAAAGATCAAGGATTAAAGCCAACGGTTCTGGTTGAATCCGACCGGATCGGACGACCGTGA

Protein Analysis

315

Amino Acids

34.92

Weight (kDa)

5.12

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prenyltrans PF00432 54 - 189 9.4e-08 Prenyltransferase alpha-alpha toroid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 684
Acc36I ACCTGC 1 cut(s) 684
AccB1I GGYRCC 1 cut(s) 43
AccBSI CCGCTC 1 cut(s) 49
AciI CCGC 8 cut(s) 47, 56, 662, 687, 718, 721, 724, 746
AclWI GGATC 5 cut(s) 65, 532, 746, 803, 941
AcoI YGGCCR 3 cut(s) 609, 652, 773
AcuI CTGAAG 2 cut(s) 365, 399
AcyI GRCGYC 2 cut(s) 44, 789
AfaI GTAC 2 cut(s) 420, 442
AfiI CCNNNNNNNGG 1 cut(s) 99
AflIII ACRYGT 3 cut(s) 175, 540, 560
AgeI ACCGGT 1 cut(s) 698
AgsI TTSAA 6 cut(s) 359, 400, 428, 493, 534, 923
AjiI CACGTC 1 cut(s) 563
AjnI CCWGG 1 cut(s) 689
AleI CACNNNNGTG 1 cut(s) 822
AluBI AGCT 7 cut(s) 16, 99, 123, 160, 295, 486, 503
AluI AGCT 7 cut(s) 16, 99, 123, 160, 295, 486, 503
Alw21I GWGCWC 1 cut(s) 488
AlwI GGATC 5 cut(s) 65, 532, 746, 803, 941
AoxI GGCC 6 cut(s) 324, 609, 652, 747, 773, 804
ApeKI GCWGC 1 cut(s) 508
AsiGI ACCGGT 1 cut(s) 698
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 2 cut(s) 748, 804
AsuC2I CCSGG 6 cut(s) 75, 84, 608, 622, 752, 772
AsuHPI GGTGA 4 cut(s) 89, 445, 560, 836
AsuII TTCGAA 1 cut(s) 19
BanI GGYRCC 1 cut(s) 43
BanII GRGCYC 2 cut(s) 90, 488
BauI CACGAG 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 592
Bbv12I GWGCWC 1 cut(s) 488
BbvI GCAGC 1 cut(s) 495
BccI CCATC 4 cut(s) 145, 226, 515, 636
BciT130I CCWGG 1 cut(s) 691
BciVI GTATCC 1 cut(s) 386
BcnI CCSGG 6 cut(s) 75, 84, 608, 622, 752, 772
BfaI CTAG 1 cut(s) 444
BfoI RGCGCY 1 cut(s) 47
BfuAI ACCTGC 1 cut(s) 684
BfuI GTATCC 1 cut(s) 386
BglI GCCNNNNNGGC 1 cut(s) 692
BglII AGATCT 1 cut(s) 410
BisI GCNGC 7 cut(s) 47, 57, 509, 687, 721, 724, 747
BlsI GCNGC 7 cut(s) 48, 58, 510, 688, 722, 725, 748
Bme1390I CCNGG 7 cut(s) 75, 84, 608, 622, 691, 752, 772
BmgBI CACGTC 1 cut(s) 563
BmgT120I GGNCC 2 cut(s) 748, 804
BmiI GGNNCC 4 cut(s) 45, 626, 685, 750
BmrFI CCNGG 7 cut(s) 75, 84, 608, 622, 691, 752, 772
BmrI ACTGGG 1 cut(s) 271
BmsI GCATC 1 cut(s) 173
BmuI ACTGGG 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 592
BplI GAGNNNNNCTC 2 cut(s) 197, 229
BpmI CTGGAG 1 cut(s) 624
Bpu14I TTCGAA 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 388
BpuMI CCSGG 6 cut(s) 75, 84, 608, 622, 752, 772
BsaBI GATNNNNATC 1 cut(s) 69
BsaHI GRCGYC 2 cut(s) 44, 789
BsaJI CCNNGG 4 cut(s) 83, 690, 750, 820
BsaWI WCCGGW 2 cut(s) 698, 930
BsaXI ACNNNNNCTCC 2 cut(s) 650, 680
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse118I RCCGGY 2 cut(s) 698, 791
Bse1I ACTGG 1 cut(s) 266
Bse8I GATNNNNATC 1 cut(s) 69
BseBI CCWGG 1 cut(s) 691
BseDI CCNNGG 4 cut(s) 83, 690, 750, 820
BseGI GGATG 5 cut(s) 313, 358, 502, 760, 846
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 3 cut(s) 579, 821, 824
BseX3I CGGCCG 2 cut(s) 609, 773
BseXI GCAGC 1 cut(s) 495
BseYI CCCAGC 2 cut(s) 12, 503
BsgI GTGCAG 1 cut(s) 662
Bsh1285I CGRYCG 5 cut(s) 612, 699, 776, 931, 944
BshFI GGCC 6 cut(s) 326, 611, 654, 749, 775, 806
BshNI GGYRCC 1 cut(s) 43
BshTI ACCGGT 1 cut(s) 698
BsiEI CGRYCG 5 cut(s) 612, 699, 776, 931, 944
BsiHKAI GWGCWC 1 cut(s) 488
BslFI GGGAC 2 cut(s) 549, 551
BslI CCNNNNNNNGG 1 cut(s) 99
BsmFI GGGAC 2 cut(s) 549, 551
BsnI GGCC 6 cut(s) 326, 611, 654, 749, 775, 806
Bsp119I TTCGAA 1 cut(s) 19
Bsp1286I GDGCHC 2 cut(s) 90, 488
Bsp19I CCATGG 1 cut(s) 820
BspACI CCGC 8 cut(s) 47, 56, 662, 687, 718, 721, 724, 746
BspANI GGCC 6 cut(s) 326, 611, 654, 749, 775, 806
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 4 cut(s) 45, 626, 685, 750
BspMI ACCTGC 1 cut(s) 684
BspPI GGATC 5 cut(s) 65, 532, 746, 803, 941
BspT104I TTCGAA 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 43
BsrBI CCGCTC 1 cut(s) 49
BsrFI RCCGGY 2 cut(s) 698, 791
BsrI ACTGG 1 cut(s) 266
BssAI RCCGGY 2 cut(s) 698, 791
BssECI CCNNGG 4 cut(s) 83, 690, 750, 820
BssNI GRCGYC 2 cut(s) 44, 789
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 820
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 691
Bst4CI ACNGT 3 cut(s) 304, 913, 945
BstACI GRCGYC 2 cut(s) 44, 789
BstBI TTCGAA 1 cut(s) 19
BstC8I GCNNGC 3 cut(s) 90, 162, 793
BstDEI CTNAG 1 cut(s) 168
BstDSI CCRYGG 1 cut(s) 820
BstF5I GGATG 5 cut(s) 313, 358, 502, 760, 846
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 1 cut(s) 46
BstMCI CGRYCG 5 cut(s) 612, 699, 776, 931, 944
BstMWI GCNNNNNNNGC 4 cut(s) 692, 732, 797, 862
BstNI CCWGG 1 cut(s) 691
BstNSI RCATGY 2 cut(s) 179, 544
BstSCI CCNGG 7 cut(s) 73, 82, 606, 620, 689, 750, 770
BstV1I GCAGC 1 cut(s) 495
BstV2I GAAGAC 1 cut(s) 592
BstX2I RGATCY 1 cut(s) 410
BstYI RGATCY 1 cut(s) 410
BstZI CGGCCG 2 cut(s) 609, 773
BsuI GTATCC 1 cut(s) 386
BsuRI GGCC 6 cut(s) 326, 611, 654, 749, 775, 806
BtgI CCRYGG 1 cut(s) 820
BtrI CACGTC 1 cut(s) 563
BtsCI GGATG 5 cut(s) 313, 358, 502, 760, 846
BveI ACCTGC 1 cut(s) 684
Cac8I GCNNGC 3 cut(s) 90, 162, 793
CfoI GCGC 1 cut(s) 46
Cfr10I RCCGGY 2 cut(s) 698, 791
Cfr13I GGNCC 2 cut(s) 748, 804
CseI GACGC 1 cut(s) 797
Csp6I GTAC 2 cut(s) 419, 441
CspAI ACCGGT 1 cut(s) 698
CviAII CATG 5 cut(s) 176, 541, 801, 821, 853
CviQI GTAC 2 cut(s) 419, 441
DdeI CTNAG 1 cut(s) 168
DinI GGCGCC 1 cut(s) 45
DraI TTTAAA 1 cut(s) 144
EaeI YGGCCR 3 cut(s) 609, 652, 773
EagI CGGCCG 2 cut(s) 609, 773
EciI GGCGGA 1 cut(s) 707
Ecl136II GAGCTC 1 cut(s) 486
EclXI CGGCCG 2 cut(s) 609, 773
Eco130I CCWWGG 1 cut(s) 820
Eco24I GRGCYC 2 cut(s) 90, 488
Eco32I GATATC 1 cut(s) 388
Eco52I CGGCCG 2 cut(s) 609, 773
Eco53kI GAGCTC 1 cut(s) 486
Eco57I CTGAAG 2 cut(s) 365, 399
EcoICRI GAGCTC 1 cut(s) 486
EcoRII CCWGG 1 cut(s) 689
EcoRV GATATC 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 820
EcoT38I GRGCYC 2 cut(s) 90, 488
EgeI GGCGCC 1 cut(s) 45
EheI GGCGCC 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 820
FaeI CATG 5 cut(s) 179, 544, 804, 824, 856
FaiI YATR 9 cut(s) 126, 177, 219, 240, 242, 542, 802, 822, 854
FalI AAGNNNNNCTT 2 cut(s) 397, 429
FaqI GGGAC 2 cut(s) 549, 551
FatI CATG 5 cut(s) 175, 540, 800, 820, 852
FauI CCCGC 1 cut(s) 669
Fnu4HI GCNGC 7 cut(s) 47, 57, 509, 687, 721, 724, 747
FokI GGATG 5 cut(s) 320, 365, 509, 767, 833
FriOI GRGCYC 2 cut(s) 90, 488
Fsp4HI GCNGC 7 cut(s) 47, 57, 509, 687, 721, 724, 747
FspBI CTAG 1 cut(s) 444
GlaI GCGC 1 cut(s) 45
GluI GCNGC 7 cut(s) 47, 57, 509, 687, 721, 724, 747
GsaI CCCAGC 2 cut(s) 16, 507
GsuI CTGGAG 1 cut(s) 624
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 6 cut(s) 326, 611, 654, 749, 775, 806
HgaI GACGC 1 cut(s) 797
HhaI GCGC 1 cut(s) 46
Hin1I GRCGYC 2 cut(s) 44, 789
Hin1II CATG 5 cut(s) 179, 544, 804, 824, 856
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 4 cut(s) 212, 221, 274, 923
HphI GGTGA 4 cut(s) 89, 445, 560, 836
Hpy188I TCNGA 5 cut(s) 171, 483, 571, 928, 938
Hpy188III TCNNGA 3 cut(s) 68, 278, 383
HpyAV CCTTC 5 cut(s) 15, 202, 389, 487, 822
HpyCH4III ACNGT 3 cut(s) 304, 913, 945
HpyCH4IV ACGT 2 cut(s) 562, 597
HpyCH4V TGCA 6 cut(s) 128, 136, 368, 511, 679, 800
HpyF10VI GCNNNNNNNGC 4 cut(s) 692, 732, 797, 862
HpyF3I CTNAG 1 cut(s) 168
HpySE526I ACGT 2 cut(s) 562, 597
Hsp92I GRCGYC 2 cut(s) 44, 789
Hsp92II CATG 5 cut(s) 179, 544, 804, 824, 856
HspAI GCGC 1 cut(s) 44
KasI GGCGCC 1 cut(s) 43
KroI GCCGGC 1 cut(s) 791
KroNI GCCGGC 1 cut(s) 793
LmnI GCTCC 6 cut(s) 157, 235, 630, 683, 720, 884
Lsp1109I GCAGC 1 cut(s) 495
LweI GCATC 1 cut(s) 173
MaeI CTAG 1 cut(s) 444
MaeII ACGT 2 cut(s) 562, 597
MbiI CCGCTC 1 cut(s) 49
MboII GAAGA 5 cut(s) 275, 405, 530, 592, 623
MfeI CAATTG 1 cut(s) 428
MflI RGATCY 1 cut(s) 410
MhlI GDGCHC 2 cut(s) 90, 488
MluCI AATT 3 cut(s) 7, 146, 428
Mly113I GGCGCC 1 cut(s) 44
MlyI GAGTC 3 cut(s) 206, 230, 268
MreI CGCCGGCG 1 cut(s) 791
MroNI GCCGGC 1 cut(s) 791
MseI TTAA 2 cut(s) 143, 902
MslI CAYNNNNRTG 2 cut(s) 822, 851
MspR9I CCNGG 7 cut(s) 75, 84, 608, 622, 691, 752, 772
MunI CAATTG 1 cut(s) 428
MvaI CCWGG 1 cut(s) 691
MwoI GCNNNNNNNGC 4 cut(s) 692, 732, 797, 862
NaeI GCCGGC 1 cut(s) 793
NarI GGCGCC 1 cut(s) 44
NciI CCSGG 6 cut(s) 75, 84, 608, 622, 752, 772
NcoI CCATGG 1 cut(s) 820
NgoMIV GCCGGC 1 cut(s) 791
NlaIII CATG 5 cut(s) 179, 544, 804, 824, 856
NlaIV GGNNCC 4 cut(s) 45, 626, 685, 750
NspI RCATGY 2 cut(s) 179, 544
NspV TTCGAA 1 cut(s) 19
OliI CACNNNNGTG 1 cut(s) 822
PaqCI CACCTGC 1 cut(s) 684
PciI ACATGT 2 cut(s) 175, 540
PcsI WCGNNNNNNNCGW 1 cut(s) 609
PdiI GCCGGC 1 cut(s) 793
PfeI GAWTC 1 cut(s) 923
PinAI ACCGGT 1 cut(s) 698
PkrI GCNGC 7 cut(s) 48, 58, 510, 688, 722, 725, 748
PleI GAGTC 3 cut(s) 206, 229, 268
PluTI GGCGCC 1 cut(s) 47
PpsI GAGTC 3 cut(s) 206, 229, 268
PscI ACATGT 2 cut(s) 175, 540
Psp124BI GAGCTC 1 cut(s) 488
Psp6I CCWGG 1 cut(s) 689
PspFI CCCAGC 2 cut(s) 12, 503
PspGI CCWGG 1 cut(s) 689
PspN4I GGNNCC 4 cut(s) 45, 626, 685, 750
PspPI GGNCC 2 cut(s) 748, 804
PsuI RGATCY 1 cut(s) 410
RsaI GTAC 2 cut(s) 420, 442
RsaNI GTAC 2 cut(s) 419, 441
RseI CAYNNNNRTG 2 cut(s) 822, 851
SacI GAGCTC 1 cut(s) 488
SaqAI TTAA 2 cut(s) 143, 902
SatI GCNGC 7 cut(s) 47, 57, 509, 687, 721, 724, 747
Sau96I GGNCC 2 cut(s) 748, 804
SchI GAGTC 3 cut(s) 206, 230, 268
ScrFI CCNGG 7 cut(s) 75, 84, 608, 622, 691, 752, 772
SduI GDGCHC 2 cut(s) 90, 488
SfaNI GCATC 1 cut(s) 173
SfoI GGCGCC 1 cut(s) 45
SfuI TTCGAA 1 cut(s) 19
SgrAI CRCCGGYG 1 cut(s) 791
SmiMI CAYNNNNRTG 2 cut(s) 822, 851
SmlI CTYRAG 1 cut(s) 403
SmoI CTYRAG 1 cut(s) 403
Sse9I AATT 3 cut(s) 7, 146, 428
SsiI CCGC 8 cut(s) 47, 56, 662, 687, 718, 721, 724, 746
SspDI GGCGCC 1 cut(s) 43
SspMI CTAG 1 cut(s) 444
SstI GAGCTC 1 cut(s) 488
StyD4I CCNGG 7 cut(s) 73, 82, 606, 620, 689, 750, 770
StyI CCWWGG 1 cut(s) 820
TaaI ACNGT 3 cut(s) 304, 913, 945
TaiI ACGT 2 cut(s) 565, 600
TaqI TCGA 4 cut(s) 19, 181, 603, 741
TasI AATT 3 cut(s) 7, 146, 428
TauI GCSGC 6 cut(s) 49, 59, 689, 723, 726, 749
TfiI GAWTC 1 cut(s) 923
Tru1I TTAA 2 cut(s) 143, 902
Tru9I TTAA 2 cut(s) 143, 902
TseI GCWGC 1 cut(s) 508
TspDTI ATGAA 2 cut(s) 263, 531
TspGWI ACGGA 3 cut(s) 107, 568, 696
XceI RCATGY 2 cut(s) 179, 544
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.