Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000905

Physical Location & Seq

Genomic Coordinates Reverse (-)

62361513 .. 62365900

Gene Structure 4388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG432100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAAAGACTCAAAATTAGCAAAGAATCTTCATCGGTCAGAGACAATGGAAAGAAAACCAATGAATTCCCTCTCTGTATTCACCAATTCTGAGATTATGAAAATGGAGAATATTTTCAAGGAGACACCACAACAATCACTTACTCAGGAGTTTTTCCAAAATCTTGCAACAAATTTCAGCTGCCATCCAAGCCGTGTTGGAAAATCGGATATAACAAGGCAACAGGTGGAAGGTTGGTTCCAGAGTAAACGAAAAGAGATTCAAGCCAAAGGCACTTCGTCCTCTGGTGCCTTTGATTGGGTTGTTGAATCCCATGAAGATCTTTCAGATTTGACTATGTTCAGCAATGCACCTGACAATTCTCAGAAGCCAAAAGATCCATGCGTCACAGATCTTTCAGAGTTGGCATTTGAAGCAAAATCATCGAAAGACGGTGCATGGTATGATGTTGCTTCTTTCCTCTCCTACAGAGTTGTCAGTTCAGGAGAACTAGAAGTTCGAGTTCGCTATGCTGGATTTGGTAGGGAGGAGGATGAATGGGTAAATGTGAGAAGAGCAGTGCGTGACAGATCTATTCCTCTAGAAGAGTCCGAGTGTCATAAGGTCAAGGTTGGGGATCTTGTCCTATGCTTCCAGGTAGTCTTTTACTTTTTTTCTTTGGAACCTTCCCGTATTTTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAWADEE

Protein Analysis

227

Amino Acids

26.05

Weight (kDa)

5.81

Isoelectric Point (pI)

50.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAWADEE	PF16719	134 - 213	5.7e-26	SAWADEE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15215 AT1G15215 AT1G15215 AT1G15215
fragaria_vesca	FvH4_1g07250 FvH4_1g07250 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_6g32282 FvH4_6g32283
malus_domestica	MD08G1111600.v1.1 MD09G1204600.v1.1 MD15G1091100.v1.1 MD17G1184800.v1.1
prunus_persica	Prupe.1G445500_v2.0.a1 Prupe.1G445500_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1
pyrus_communis	pycom08g09270 pycom09g12150 pycom15g08510 pycom17g19430
rosa_chinensis	RchiOBHm_Chr2g0140241 RchiOBHm_Chr4g0409031 RchiOBHm_Chr5g0076021 RchiOBHm_Chr5g0078201 RchiOBHm_Chr6g0306581
rosa_laevigata	RLG00000010783 RLG00000019858
rosa_multiflora	Rmu_sc0005446.1_g000009
rosa_roxburghii	Rroxscaffold_1G00035110 Rroxscaffold_2G00082850 Rroxscaffold_2G00104960 Rroxscaffold_3G00232630 Rroxscaffold_5G00355740 Rroxscaffold_5G00365450 Rroxscaffold_5G00380960 Rroxscaffold_7G00161650
rosa_rugosa	Rorug02G0361600 Rorug02G0361700 Rorug02G0361700 Rorug02G0361700 Rorug05G0290900 Rorug05G0291000 Rorug06G0350500 Rorug06G0350600
rosa_samantha	Rh2AG412500 Rh2BG422800 Rh2CG398700 Rh2CG405000 Rh2DG432100 Rh4CG272400 Rh5AG500700 Rh5CG321900 Rh6AG463000 Rh6BG437900 Rh6CG477200 Rh6DG463800
rosa_wichuraiana	Rw2G033810 Rw5G047830 Rw6G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	287
AclWI	GGATC	2 cut(s)	371, 624
AcsI	RAATTY	2 cut(s)	64, 172
AfiI	CCNNNNNNNGG	1 cut(s)	297
AgsI	TTSAA	4 cut(s)	118, 263, 308, 413
AjnI	CCWGG	1 cut(s)	633
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	1 cut(s)	180
AluI	AGCT	1 cut(s)	180
Alw26I	GTCTC	2 cut(s)	35, 116
AlwI	GGATC	2 cut(s)	371, 624
ApeKI	GCWGC	1 cut(s)	180
ApoI	RAATTY	2 cut(s)	64, 172
Asp700I	GAANNNNTTC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	1 cut(s)	192
BceAI	ACGGC	1 cut(s)	177
BcgI	CGANNNNNNTGC	2 cut(s)	405, 439
BciT130I	CCWGG	1 cut(s)	635
BcoDI	GTCTC	2 cut(s)	35, 116
BfaI	CTAG	2 cut(s)	491, 581
BfmI	CTRYAG	1 cut(s)	466
BglII	AGATCT	3 cut(s)	319, 391, 569
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	635
BmiI	GGNNCC	3 cut(s)	239, 289, 663
BmrFI	CCNGG	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	635
BseGI	GGATG	2 cut(s)	184, 538
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	3 cut(s)	81, 158, 377
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	2 cut(s)	35, 116
Bsp143I	GATC	5 cut(s)	319, 376, 391, 569, 616
BspCNI	CTCAG	3 cut(s)	82, 157, 376
BspLI	GGNNCC	3 cut(s)	239, 289, 663
BspPI	GGATC	2 cut(s)	371, 624
BspQI	GCTCTTC	1 cut(s)	547
BspT107I	GGYRCC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	352
BssMI	GATC	5 cut(s)	319, 376, 391, 569, 616
Bst2UI	CCWGG	1 cut(s)	635
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	2 cut(s)	547, 579
BstDEI	CTNAG	3 cut(s)	90, 144, 363
BstF5I	GGATG	2 cut(s)	184, 538
BstKTI	GATC	5 cut(s)	322, 379, 394, 572, 619
BstMAI	GTCTC	2 cut(s)	35, 116
BstMBI	GATC	5 cut(s)	319, 376, 391, 569, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 413
BstNI	CCWGG	1 cut(s)	635
BstSCI	CCNGG	1 cut(s)	633
BstSFI	CTRYAG	1 cut(s)	466
BstV1I	GCAGC	1 cut(s)	167
BstX2I	RGATCY	5 cut(s)	319, 376, 391, 569, 616
BstYI	RGATCY	5 cut(s)	319, 376, 391, 569, 616
BtsCI	GGATG	2 cut(s)	184, 538
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	1 cut(s)	564
CseI	GACGC	1 cut(s)	373
CviAII	CATG	3 cut(s)	314, 381, 438
CviJI	RGCY	4 cut(s)	180, 192, 266, 370
CviKI_1	RGCY	4 cut(s)	180, 192, 266, 370
DdeI	CTNAG	3 cut(s)	90, 144, 363
DpnI	GATC	5 cut(s)	321, 378, 393, 571, 618
DpnII	GATC	5 cut(s)	319, 376, 391, 569, 616
Eam1104I	CTCTTC	2 cut(s)	547, 579
EarI	CTCTTC	2 cut(s)	547, 579
EcoRI	GAATTC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	633
FaeI	CATG	3 cut(s)	317, 384, 441
FatI	CATG	3 cut(s)	313, 380, 437
Fnu4HI	GCNGC	1 cut(s)	181
FokI	GGATG	2 cut(s)	171, 545
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	2 cut(s)	491, 581
GluI	GCNGC	1 cut(s)	181
HgaI	GACGC	1 cut(s)	373
Hin1II	CATG	3 cut(s)	317, 384, 441
HinfI	GANTC	5 cut(s)	8, 25, 259, 308, 587
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	7 cut(s)	40, 91, 208, 328, 366, 400, 592
Hpy188III	TCNNGA	4 cut(s)	146, 241, 483, 581
Hpy8I	GTNNAC	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	224, 675
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4V	TGCA	3 cut(s)	167, 350, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 413
HpyF3I	CTNAG	3 cut(s)	90, 144, 363
Hsp92II	CATG	3 cut(s)	317, 384, 441
Kzo9I	GATC	5 cut(s)	319, 376, 391, 569, 616
LguI	GCTCTTC	1 cut(s)	547
LpnPI	CCDG	9 cut(s)	131, 209, 254, 270, 366, 468, 498, 620, 647
Lsp1109I	GCAGC	1 cut(s)	167
MaeI	CTAG	2 cut(s)	491, 581
MaeIII	GTNAC	2 cut(s)	385, 563
MalI	GATC	5 cut(s)	321, 378, 393, 571, 618
MboI	GATC	5 cut(s)	319, 376, 391, 569, 616
MboII	GAAGA	4 cut(s)	20, 329, 564, 596
MflI	RGATCY	5 cut(s)	319, 376, 391, 569, 616
MluCI	AATT	5 cut(s)	14, 64, 85, 172, 358
MlyI	GAGTC	2 cut(s)	2, 596
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	6 cut(s)	80, 292, 470, 520, 523, 588
MroXI	GAANNNNTTC	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	635
MvaI	CCWGG	1 cut(s)	635
MwoI	GCNNNNNNNGC	2 cut(s)	189, 413
NdeII	GATC	5 cut(s)	319, 376, 391, 569, 616
NlaIII	CATG	3 cut(s)	317, 384, 441
NlaIV	GGNNCC	3 cut(s)	239, 289, 663
NmuCI	GTSAC	2 cut(s)	385, 563
PciSI	GCTCTTC	1 cut(s)	547
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	3 cut(s)	25, 259, 308
PkrI	GCNGC	1 cut(s)	182
PleI	GAGTC	2 cut(s)	2, 595
PpsI	GAGTC	2 cut(s)	2, 595
Psp6I	CCWGG	1 cut(s)	633
PspGI	CCWGG	1 cut(s)	633
PspN4I	GGNNCC	3 cut(s)	239, 289, 663
PsuI	RGATCY	5 cut(s)	319, 376, 391, 569, 616
PvuII	CAGCTG	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	547
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	5 cut(s)	319, 376, 391, 569, 616
SchI	GAGTC	2 cut(s)	2, 596
ScrFI	CCNGG	1 cut(s)	635
SetI	ASST	8 cut(s)	182, 228, 235, 355, 606, 612, 639, 667
SfcI	CTRYAG	1 cut(s)	466
Sse9I	AATT	5 cut(s)	14, 64, 85, 172, 358
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	2 cut(s)	491, 581
StyD4I	CCNGG	1 cut(s)	633
TaaI	ACNGT	1 cut(s)	434
TaqI	TCGA	2 cut(s)	425, 499
TaqII	GACCGA	1 cut(s)	24
TasI	AATT	5 cut(s)	14, 64, 85, 172, 358
TfiI	GAWTC	3 cut(s)	25, 259, 308
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	2 cut(s)	385, 563
TseI	GCWGC	1 cut(s)	180
Tsp45I	GTSAC	2 cut(s)	385, 563
TspDTI	ATGAA	6 cut(s)	17, 20, 77, 113, 330, 549
TspRI	CASTG	1 cut(s)	564
XapI	RAATTY	2 cut(s)	64, 172
XbaI	TCTAGA	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	2 cut(s)	491, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.