Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000905

Physical Location & Seq

Genomic Coordinates Reverse (-)

25329163 .. 25336483

Gene Structure 7321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32283.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAAAGACTCAAACTTAGCATACAATCGTCGTCAGTCAGAGACAAAGGAAAGAAAACCAATGGATACTCTCTCTGTCTTTACCCATTCTGAGATTATGAAATTGGAGAATATATTCAAGGAGACACCACAACAAGCACTTACTCAGGGGTTTTTCCAAAATCTTGCGATAGATTTCAGCTGCCAACCAAGCCGTCTTGGAAAATCGGATATAACACAGCAACAGGTGGAAGGTTGGTTCCAGAGCAGACGAAAAGAGATTCAAGCCAAAGGCACTACTTCATCTGGTGCCTTTGATTGGGTTGTTGAATCCCATGAAGATCTTTCAGATTTGACTATGTTCAGCAATGAACCTGACAATTCTCGTACGCCAAAAGATCCATGCGTCACAGATCTTTCAGAATTGGCATTTGAAGCAAAATCAGCAAAAGATGGTGCATGGTATGATGTTGCATCTTTCCTCACTTACAGAGTTGTCAGTTCAGGAGAACTAGTTCATCTGACGCCATTTCATCCTATGCCACCTATTGTCGATGGTTGGTTCAAGCATTCTCTACTTCTTGCAAATGGATGGCTACCTCCTTATAGTGATCGCCTTCATGCTGGAAAAGATATTTTTGATACCGATTATCCAGATGATGAGAAAATAGTAGGTGTTCATTGTCCAATCGATGAAACATTTGTTACTCTTGATAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAWADEE

Protein Analysis

234

Amino Acids

26.46

Weight (kDa)

4.86

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15215 AT1G15215 AT1G15215 AT1G15215
fragaria_vesca	FvH4_1g07250 FvH4_1g07250 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_2g35340 FvH4_6g32282 FvH4_6g32283
malus_domestica	MD08G1111600.v1.1 MD09G1204600.v1.1 MD15G1091100.v1.1 MD17G1184800.v1.1
prunus_persica	Prupe.1G445500_v2.0.a1 Prupe.1G445500_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1 Prupe.3G060300_v2.0.a1
pyrus_communis	pycom08g09270 pycom09g12150 pycom15g08510 pycom17g19430
rosa_chinensis	RchiOBHm_Chr2g0140241 RchiOBHm_Chr4g0409031 RchiOBHm_Chr5g0076021 RchiOBHm_Chr5g0078201 RchiOBHm_Chr6g0306581
rosa_laevigata	RLG00000010783 RLG00000019858
rosa_multiflora	Rmu_sc0005446.1_g000009
rosa_roxburghii	Rroxscaffold_1G00035110 Rroxscaffold_2G00082850 Rroxscaffold_2G00104960 Rroxscaffold_3G00232630 Rroxscaffold_5G00355740 Rroxscaffold_5G00365450 Rroxscaffold_5G00380960 Rroxscaffold_7G00161650
rosa_rugosa	Rorug02G0361600 Rorug02G0361700 Rorug02G0361700 Rorug02G0361700 Rorug05G0290900 Rorug05G0291000 Rorug06G0350500 Rorug06G0350600
rosa_samantha	Rh2AG412500 Rh2BG422800 Rh2CG398700 Rh2CG405000 Rh2DG432100 Rh4CG272400 Rh5AG500700 Rh5CG321900 Rh6AG463000 Rh6BG437900 Rh6CG477200 Rh6DG463800
rosa_wichuraiana	Rw2G033810 Rw5G047830 Rw6G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	287
AclWI	GGATC	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	503
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	1 cut(s)	297
AgsI	TTSAA	5 cut(s)	118, 263, 308, 413, 544
AhlI	ACTAGT	1 cut(s)	490
AloI	GAACNNNNNNTCC	4 cut(s)	221, 253, 477, 509
AluBI	AGCT	1 cut(s)	180
AluI	AGCT	1 cut(s)	180
Alw26I	GTCTC	2 cut(s)	35, 116
AlwI	GGATC	1 cut(s)	371
ApeKI	GCWGC	1 cut(s)	180
Asp700I	GAANNNNTTC	2 cut(s)	113, 492
BanI	GGYRCC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	3 cut(s)	425, 527, 564
BceAI	ACGGC	1 cut(s)	177
BciVI	GTATCC	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	35, 116
BcuI	ACTAGT	1 cut(s)	490
BfaI	CTAG	1 cut(s)	491
BfuI	GTATCC	1 cut(s)	58
BglII	AGATCT	2 cut(s)	319, 391
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	239, 289
BmsI	GCATC	1 cut(s)	461
Bsa29I	ATCGAT	1 cut(s)	669
BsaHI	GRCGYC	1 cut(s)	503
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	352
BseCI	ATCGAT	1 cut(s)	669
BseGI	GGATG	2 cut(s)	511, 575
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	2 cut(s)	81, 158
BseXI	GCAGC	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	287
BshVI	ATCGAT	1 cut(s)	669
BsiWI	CGTACG	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	2 cut(s)	35, 116
BsmI	GAATGC	1 cut(s)	547
Bsp143I	GATC	4 cut(s)	319, 376, 391, 589
BspCNI	CTCAG	2 cut(s)	82, 157
BspDI	ATCGAT	1 cut(s)	669
BspLI	GGNNCC	2 cut(s)	239, 289
BspPI	GGATC	1 cut(s)	371
BspT107I	GGYRCC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	352
BssMI	GATC	4 cut(s)	319, 376, 391, 589
BssNI	GRCGYC	1 cut(s)	503
BstACI	GRCGYC	1 cut(s)	503
BstDEI	CTNAG	3 cut(s)	16, 90, 144
BstF5I	GGATG	2 cut(s)	511, 575
BstKTI	GATC	4 cut(s)	322, 379, 394, 592
BstMAI	GTCTC	2 cut(s)	35, 116
BstMBI	GATC	4 cut(s)	319, 376, 391, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	189, 413, 422
BstV1I	GCAGC	1 cut(s)	167
BstX2I	RGATCY	3 cut(s)	319, 376, 391
BstYI	RGATCY	3 cut(s)	319, 376, 391
Bsu15I	ATCGAT	1 cut(s)	669
BsuI	GTATCC	1 cut(s)	58
BsuTUI	ATCGAT	1 cut(s)	669
BtsCI	GGATG	2 cut(s)	511, 575
ClaI	ATCGAT	1 cut(s)	669
CseI	GACGC	2 cut(s)	373, 511
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	4 cut(s)	314, 381, 438, 599
CviJI	RGCY	4 cut(s)	180, 192, 266, 574
CviKI_1	RGCY	4 cut(s)	180, 192, 266, 574
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	3 cut(s)	16, 90, 144
DpnI	GATC	4 cut(s)	321, 378, 393, 591
DpnII	GATC	4 cut(s)	319, 376, 391, 589
FaeI	CATG	4 cut(s)	317, 384, 441, 602
FatI	CATG	4 cut(s)	313, 380, 437, 598
Fnu4HI	GCNGC	1 cut(s)	181
FokI	GGATG	2 cut(s)	498, 582
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	1 cut(s)	491
GluI	GCNGC	1 cut(s)	181
HgaI	GACGC	2 cut(s)	373, 511
Hin1I	GRCGYC	1 cut(s)	503
Hin1II	CATG	4 cut(s)	317, 384, 441, 602
HinfI	GANTC	3 cut(s)	8, 259, 308
Hpy188I	TCNGA	6 cut(s)	40, 91, 208, 328, 400, 501
Hpy188III	TCNNGA	4 cut(s)	241, 483, 632, 689
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	2 cut(s)	224, 605
HpyCH4V	TGCA	3 cut(s)	437, 452, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	189, 413, 422
HpyF3I	CTNAG	3 cut(s)	16, 90, 144
Hsp92I	GRCGYC	1 cut(s)	503
Hsp92II	CATG	4 cut(s)	317, 384, 441, 602
Kzo9I	GATC	4 cut(s)	319, 376, 391, 589
LpnPI	CCDG	8 cut(s)	131, 209, 254, 270, 366, 468, 588, 645
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	1 cut(s)	461
MaeI	CTAG	1 cut(s)	491
MaeIII	GTNAC	2 cut(s)	385, 682
MalI	GATC	4 cut(s)	321, 378, 393, 591
MboI	GATC	4 cut(s)	319, 376, 391, 589
MboII	GAAGA	1 cut(s)	329
MflI	RGATCY	3 cut(s)	319, 376, 391
MluCI	AATT	3 cut(s)	101, 358, 401
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	2 cut(s)	470, 588
MroXI	GAANNNNTTC	2 cut(s)	113, 492
MspA1I	CMGCKG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	547
MwoI	GCNNNNNNNGC	3 cut(s)	189, 413, 422
NdeII	GATC	4 cut(s)	319, 376, 391, 589
NlaIII	CATG	4 cut(s)	317, 384, 441, 602
NlaIV	GGNNCC	2 cut(s)	239, 289
NmuCI	GTSAC	1 cut(s)	385
PctI	GAATGC	1 cut(s)	547
PdmI	GAANNNNTTC	2 cut(s)	113, 492
PfeI	GAWTC	2 cut(s)	259, 308
Pfl23II	CGTACG	1 cut(s)	365
PkrI	GCNGC	1 cut(s)	182
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PspLI	CGTACG	1 cut(s)	365
PspN4I	GGNNCC	2 cut(s)	239, 289
PsuI	RGATCY	3 cut(s)	319, 376, 391
PvuII	CAGCTG	1 cut(s)	180
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	4 cut(s)	319, 376, 391, 589
SchI	GAGTC	1 cut(s)	2
SetI	ASST	7 cut(s)	182, 228, 235, 355, 526, 580, 655
SfaNI	GCATC	1 cut(s)	461
SpeI	ACTAGT	1 cut(s)	490
Sse9I	AATT	3 cut(s)	101, 358, 401
SspMI	CTAG	1 cut(s)	491
TaqI	TCGA	2 cut(s)	531, 669
TasI	AATT	3 cut(s)	101, 358, 401
TfiI	GAWTC	2 cut(s)	259, 308
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	385
XmnI	GAANNNNTTC	2 cut(s)	113, 492
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.