Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007604

Physical Location & Seq

Genomic Coordinates Reverse (-)

64541478 .. 64546364

Gene Structure 4887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG476800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2535 bp

ATGGCGGTGACATCATCATCATCGTGTAAGGAGCTAGGAGGTGGTGGGATGAAGATGCAAATGGACAATGGCAAGTACGTGAGGTACACGCCGGAGCAAGTAGAAGCCTTGGAGAGGCTCTACCATGAGTGCCCCAAACCTAGCTCTATGCGCCGGCAGCAGCTCATTCGAGAGTGCCCGATTCTCTCCAACATCGAGCCGAAGCAGATCAAAGTCTGGTTTCAGAACCGGAGGTGTAGAGAGAAGCAGAGGAAAGAGGCGTCTAGATTGCAAACGGTGAACAGAAAGCTGACGGCGATGAACAAGCTTTTGATGGAGGAAAACGATAGGTTGCAGAAACAGGTGTCGCACTTGGTCTACGAAAACAGCTATTTCCGCCAGCAGACACAGAATACGACTCTGGCCACAACAGACACAAGTTGTGAGTCGGTGGTGACAAGTGGTCAACACCATTTGACTCCTCAGCATCCACCGAGGGATGCCAGCCCTGCTGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAATTGCCTGGTATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTTGCACCGGTGTGGCAGCACGTGCTTGCGGCCTGGTGGGTCTAGAACCTACAAGGGTCTCTGAAATCCTTAAAGATCGACCCTCGTGGTTCCGTAATTGTCGATCTGTGGATGTGCTAAATGTGTTGTCCACTGGAAATGGTGGAACCATTGAACTGCTTTACATGCAGCTCTATGCACCCACAACTTTGGCACCAGCTCGCGACTTCTGGTTGCTGCGCTATACATCTGTTTTGGAAGATGGTAGTCTTGTGGTCTGTGAAAGATCACTTAACAACACTCAAAATGGTCCAAGTATGCCACCGGTGCAGAATTTTGTGAGAGCAGAAATGCTGCCGAGTGGGTATCTAATTAGACCTTGTGAAGGTGGTGGATCAATCATCCACATTGTTGATCATATGGATTTAGAGCCTTGGAGTGTACCTGAAGTCTTGCGCCCGCTTTATGAGTCTTCAACACTTCTCGCTCAGAAGACAACTATGGCGGCTTTACGCAATTTGAGGCAGATTTCTCAAGAAGTTTCTCAGCCTAATTCCAATGGTTGGGGAAGGAGGCCTGCAGCTCTACGCGCTCTTAGTCAAAGATTGAGCAAGGGTTTCAACGAAGCAGTGAATGGGTTTACAGATGAGGGATGGTCTATTTTAGAAAGTGATGGTGTTGATGACATTACCCTTCTTGTGAACTCGTCTCCAGGCAAGATGATGGGTGCGAATCTTTATGCCAATGGAGTTCCATCTATGAGCAATGCAGTGTTATGTGCCAAAGCATCTATGTTACTCCAAAATGTGCCTCCAGCCATACTTCTTAGATTCTTGCGAGAACACCGATCAGAGTGGGCTGACAGAAGTATTGATGCGTATTCAGCAGCTGCTATTAAAGCTGGTCCATGTGGCATGCTAGGTTCTCGAGCTGGAAGTTTCGGGGATCAAGTTATTCTTCCACTGGCTCACACAATAGAACATGAAGAGTTCATGGAGGTCATTAAGATTGAAAATATGGGTCACTACCGGGACGATATGATGATGCCTGCAGCTGACATTTTCCTCTTGCAACTGTGTAGTGGAGTGGATGAGAATGCTGTTGGCACCTGTGCCGAGCTTGTCTTTGCTCCTATTGATGCCTCTTTTTCTGATGATGCTCCAATTCTACCATCTGGTTTTCGCATCATTCCTCTTGATTCTCACATGGATGCCCCCAGTCCAAACCGTACGCTTGATCTTGCCTCTGCTCTTGAAATTGGACCGACAGGAAACAGATCATCTGGTGATAATGCTGGTCACTGTGGGAATACAAAATCTGTTATGACAATAGCATTCCAATTTGCATTTGAAATTCATCTTCAAGATAATGTAGCGTCCATGGCAAGGCAGTATATCCGTAGTATTATAGCAGCAGTGCAGAGGGTGGCACTGGCACTCTCCCCTTCTCGTTTTGGTTCTCATACTGGTTTTCGCCCACCACCTGGCACTCCCGAAGCACAAACACTAGCTGGTTGGATCTGTCAGAGCTATAGGTGCTATCTAGGGGTAGAACTACTAAAAAGCGAAGGAAGCGAGTCCGTTCTCAAATCCCTCTGGCATCACTCAGATGCAATCTTATGCTGCTCTTTGAAGGCTTTGCCAGTATTTACATTTTCAAACCAGGCAGGCCTCGACATGCTTGAGACCACCTTGGTTGCACTTCAAGACATTACACTGGAAAAGATTTTCGATGACAATGGAAGGAAGATCCTGTTTACTGAGTTCCCACAGATCATGCAGCAGGGTTTTATGTGTCTACAAGGTGGTATATGCATGTCAAGCATGGGAAGACCAATCTCTTATGAGAGAGCAGTGGCGTGGAAGGTGTTGAATGAAGAAGAAACTGCTCACTGTATCTGCTTCATGTTCATCAACTGGTCATTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010033 GO:0010065 GO:0010067 GO:0010072 GO:0010087 GO:0010089 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

844

Amino Acids

92.98

Weight (kDa)

5.94

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	25 - 83	4.7e-16	Homeodomain
START	PF01852	169 - 377	1.1e-54	START domain
MEKHLA	PF08670	703 - 843	3.1e-46	MEKHLA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32880
fragaria_vesca	FvH4_2g35360 FvH4_2g35360 FvH4_2g35360 FvH4_2g35360
malus_domestica	MD08G1112900.v1.1 MD15G1092200.v1.1
prunus_persica	Prupe.1G447100_v2.0.a1 Prupe.1G447100_v2.0.a1
pyrus_communis	pycom08g09360 pycom110g00010 pycom15g08570
rosa_chinensis	RchiOBHm_Chr6g0306551
rosa_laevigata	RLG00000010786
rosa_multiflora	Rmu_sc0002971.1_g000003 Rmu_sc0002971.1_g000004
rosa_roxburghii	Rroxscaffold_7G00161680
rosa_rugosa	Rorug06G0350500 Rorug06G0350500
rosa_samantha	Rh6AG462700 Rh6BG438100 Rh6CG476800 Rh6DG463500
rosa_wichuraiana	Rw6G040320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	817, 1709
AccB7I	CCANNNNNTGG	2 cut(s)	1167, 2087
AccI	GTMKAC	2 cut(s)	357, 2401
AccII	CGCG	2 cut(s)	828, 1194
AccIII	TCCGGA	1 cut(s)	592
AciI	CCGC	5 cut(s)	5, 376, 654, 1064, 1109
AclWI	GGATC	4 cut(s)	1006, 1557, 2129, 2347
AcoI	YGGCCR	1 cut(s)	402
AcsI	RAATTY	2 cut(s)	937, 1956
AcuI	CTGAAG	1 cut(s)	1071
AcvI	CACGTG	1 cut(s)	647
AcyI	GRCGYC	1 cut(s)	260
AfaI	GTAC	4 cut(s)	77, 86, 1047, 1834
AfiI	CCNNNNNNNGG	5 cut(s)	114, 989, 1167, 1989, 2087
AgeI	ACCGGT	2 cut(s)	632, 928
AhdI	GACNNNNNGTC	1 cut(s)	441
AjnI	CCWGG	6 cut(s)	574, 586, 657, 1315, 2086, 2265
AleI	CACNNNNGTG	1 cut(s)	635
Alw26I	GTCTC	4 cut(s)	509, 688, 1317, 2282
AlwI	GGATC	4 cut(s)	1006, 1557, 2129, 2347
AlwNI	CAGNNNCTG	1 cut(s)	1493
Ama87I	CYCGRG	1 cut(s)	1530
Aor13HI	TCCGGA	1 cut(s)	592
AoxI	GGCC	5 cut(s)	402, 540, 655, 1178, 2272
ApoI	RAATTY	2 cut(s)	937, 1956
AsiGI	ACCGGT	2 cut(s)	632, 928
AspLEI	GCGC	4 cut(s)	153, 846, 1062, 1196
AspS9I	GGNCC	5 cut(s)	565, 590, 914, 1508, 1865
AsuC2I	CCSGG	1 cut(s)	1634
AsuHPI	GGTGA	4 cut(s)	19, 289, 445, 1901
AvaI	CYCGRG	1 cut(s)	1530
AvaII	GGWCC	5 cut(s)	565, 590, 914, 1508, 1865
BaeGI	GKGCMC	2 cut(s)	134, 179
BalI	TGGCCA	1 cut(s)	404
BanI	GGYRCC	2 cut(s)	817, 1709
BauI	CACGAG	1 cut(s)	709
BbrPI	CACGTG	1 cut(s)	647
BbsI	GAAGAC	3 cut(s)	1068, 1103, 2440
BbvCI	CCTCAGC	1 cut(s)	462
BccI	CCATC	7 cut(s)	307, 860, 1251, 1271, 1321, 1366, 1783
BceAI	ACGGC	1 cut(s)	309
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BciT130I	CCWGG	6 cut(s)	576, 588, 659, 1317, 2088, 2267
BclI	TGATCA	1 cut(s)	1018
BcnI	CCSGG	1 cut(s)	1634
BcoDI	GTCTC	4 cut(s)	509, 688, 1317, 2282
BfaI	CTAG	7 cut(s)	35, 141, 264, 668, 1523, 2111, 2147
BfmI	CTRYAG	3 cut(s)	1182, 1653, 2134
Bme1390I	CCNGG	7 cut(s)	576, 588, 659, 1317, 1634, 2088, 2267
Bme18I	GGWCC	5 cut(s)	565, 590, 914, 1508, 1865
BmeRI	GACNNNNNGTC	1 cut(s)	441
BmeT110I	CYCGRG	1 cut(s)	1530
BmgT120I	GGNCC	5 cut(s)	565, 590, 914, 1508, 1865
BmiI	GGNNCC	5 cut(s)	566, 716, 772, 819, 1711
BmrFI	CCNGG	7 cut(s)	576, 588, 659, 1317, 1634, 2088, 2267
BmrI	ACTGGG	1 cut(s)	1815
BmuI	ACTGGG	1 cut(s)	1815
BoxI	GACNNNNGTC	1 cut(s)	499
BpiI	GAAGAC	3 cut(s)	1068, 1103, 2440
BpmI	CTGGAG	2 cut(s)	1299, 1401
Bpu10I	CCTNAGC	1 cut(s)	462
BpuEI	CTTGAG	2 cut(s)	1122, 2306
BpuMI	CCSGG	1 cut(s)	1634
BsaAI	YACGTR	2 cut(s)	79, 647
BsaHI	GRCGYC	1 cut(s)	260
BsaI	GGTCTC	2 cut(s)	688, 2282
BsaJI	CCNNGG	5 cut(s)	108, 473, 1037, 1983, 2295
BsaWI	WCCGGW	4 cut(s)	228, 592, 632, 928
Bsc4I	CCNNNNNNNGG	5 cut(s)	114, 989, 1167, 1989, 2087
Bse118I	RCCGGY	3 cut(s)	153, 632, 928
Bse1I	ACTGG	9 cut(s)	550, 763, 1572, 1821, 2040, 2074, 2246, 2325, 2525
Bse3DI	GCAATG	2 cut(s)	504, 1375
BseAI	TCCGGA	1 cut(s)	592
BseBI	CCWGG	6 cut(s)	576, 588, 659, 1317, 2088, 2267
BseDI	CCNNGG	5 cut(s)	108, 473, 1037, 1983, 2295
BseGI	GGATG	8 cut(s)	54, 466, 484, 742, 1005, 1262, 1699, 1819
BseLI	CCNNNNNNNGG	5 cut(s)	114, 989, 1167, 1989, 2087
BseMI	GCAATG	2 cut(s)	504, 1375
BseMII	CTCAG	5 cut(s)	476, 1106, 1163, 2223, 2355
BseNI	ACTGG	9 cut(s)	550, 763, 1572, 1821, 2040, 2074, 2246, 2325, 2525
BseRI	GAGGAG	2 cut(s)	450, 527
BseSI	GKGCMC	2 cut(s)	134, 179
BsgI	GTGCAG	2 cut(s)	953, 2042
Bsh1236I	CGCG	2 cut(s)	828, 1194
BshFI	GGCC	5 cut(s)	404, 542, 657, 1180, 2274
BshNI	GGYRCC	2 cut(s)	817, 1709
BshTI	ACCGGT	2 cut(s)	632, 928
BsiHKCI	CYCGRG	1 cut(s)	1530
BsiSI	CCGG	7 cut(s)	92, 154, 229, 593, 633, 929, 1633
BsiWI	CGTACG	1 cut(s)	1832
BslFI	GGGAC	1 cut(s)	1649
BslI	CCNNNNNNNGG	5 cut(s)	114, 989, 1167, 1989, 2087
BsmAI	GTCTC	4 cut(s)	509, 688, 1317, 2282
BsmBI	CGTCTC	1 cut(s)	1317
BsmFI	GGGAC	1 cut(s)	1649
BsmI	GAATGC	2 cut(s)	1705, 1937
BsnI	GGCC	5 cut(s)	404, 542, 657, 1180, 2274
Bso31I	GGTCTC	2 cut(s)	688, 2282
BsoBI	CYCGRG	1 cut(s)	1530
Bsp1286I	GDGCHC	2 cut(s)	134, 179
Bsp13I	TCCGGA	1 cut(s)	592
Bsp19I	CCATGG	1 cut(s)	1983
Bsp68I	TCGCGA	1 cut(s)	828
BspACI	CCGC	5 cut(s)	5, 376, 654, 1064, 1109
BspANI	GGCC	5 cut(s)	404, 542, 657, 1180, 2274
BspCNI	CTCAG	5 cut(s)	475, 1105, 1162, 2222, 2356
BspEI	TCCGGA	1 cut(s)	592
BspFNI	CGCG	2 cut(s)	828, 1194
BspLI	GGNNCC	5 cut(s)	566, 716, 772, 819, 1711
BspMAI	CTGCAG	2 cut(s)	1186, 1657
BspPI	GGATC	4 cut(s)	1006, 1557, 2129, 2347
BspT107I	GGYRCC	2 cut(s)	817, 1709
BspTNI	GGTCTC	2 cut(s)	688, 2282
BsrDI	GCAATG	2 cut(s)	504, 1375
BsrFI	RCCGGY	3 cut(s)	153, 632, 928
BsrI	ACTGG	9 cut(s)	550, 763, 1572, 1821, 2040, 2074, 2246, 2325, 2525
BssAI	RCCGGY	3 cut(s)	153, 632, 928
BssECI	CCNNGG	5 cut(s)	108, 473, 1037, 1983, 2295
BssNI	GRCGYC	1 cut(s)	260
BssSI	CACGAG	1 cut(s)	709
BssT1I	CCWWGG	4 cut(s)	108, 1037, 1983, 2295
Bst2BI	CACGAG	1 cut(s)	709
Bst2UI	CCWGG	6 cut(s)	576, 588, 659, 1317, 2088, 2267
Bst4CI	ACNGT	6 cut(s)	277, 626, 1680, 1832, 1907, 2498
Bst6I	CTCTTC	1 cut(s)	1584
BstACI	GRCGYC	1 cut(s)	260
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstBAI	YACGTR	2 cut(s)	79, 647
BstDEI	CTNAG	7 cut(s)	462, 1092, 1149, 1199, 1430, 2209, 2364
BstDSI	CCRYGG	1 cut(s)	1983
BstENI	CCTNNNNNAGG	2 cut(s)	112, 987
BstF5I	GGATG	8 cut(s)	54, 466, 484, 742, 1005, 1262, 1699, 1819
BstFNI	CGCG	2 cut(s)	828, 1194
BstHHI	GCGC	4 cut(s)	153, 846, 1062, 1196
BstMAI	GTCTC	4 cut(s)	509, 688, 1317, 2282
BstNI	CCWGG	6 cut(s)	576, 588, 659, 1317, 2088, 2267
BstNSI	RCATGY	4 cut(s)	793, 1522, 2284, 2422
BstPAI	GACNNNNGTC	1 cut(s)	499
BstSCI	CCNGG	7 cut(s)	574, 586, 657, 1315, 1632, 2086, 2265
BstSFI	CTRYAG	3 cut(s)	1182, 1653, 2134
BstSLI	GKGCMC	2 cut(s)	134, 179
BstUI	CGCG	2 cut(s)	828, 1194
BstV2I	GAAGAC	3 cut(s)	1068, 1103, 2440
BstX2I	RGATCY	2 cut(s)	2121, 2352
BstXI	CCANNNNNNTGG	2 cut(s)	575, 814
BstYI	RGATCY	2 cut(s)	2121, 2352
BsuRI	GGCC	5 cut(s)	404, 542, 657, 1180, 2274
BtgI	CCRYGG	1 cut(s)	1983
BtgZI	GCGATG	1 cut(s)	311
BtsCI	GGATG	8 cut(s)	54, 466, 484, 742, 1005, 1262, 1699, 1819
BtsI	GCAGTG	4 cut(s)	1239, 1380, 2025, 2463
BtuMI	TCGCGA	1 cut(s)	828
CaiI	CAGNNNCTG	1 cut(s)	1493
CfoI	GCGC	4 cut(s)	153, 846, 1062, 1196
Cfr10I	RCCGGY	3 cut(s)	153, 632, 928
Cfr13I	GGNCC	5 cut(s)	565, 590, 914, 1508, 1865
CseI	GACGC	2 cut(s)	249, 1968
Csp6I	GTAC	4 cut(s)	76, 85, 1046, 1833
CspAI	ACCGGT	2 cut(s)	632, 928
CspCI	CAANNNNNGTGG	2 cut(s)	2281, 2316
CviQI	GTAC	4 cut(s)	76, 85, 1046, 1833
DdeI	CTNAG	7 cut(s)	462, 1092, 1149, 1199, 1430, 2209, 2364
DriI	GACNNNNNGTC	1 cut(s)	441
EaeI	YGGCCR	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	1584
Eam1105I	GACNNNNNGTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	1584
EciI	GGCGGA	1 cut(s)	365
Eco130I	CCWWGG	4 cut(s)	108, 1037, 1983, 2295
Eco147I	AGGCCT	2 cut(s)	1180, 2274
Eco31I	GGTCTC	2 cut(s)	688, 2282
Eco47I	GGWCC	5 cut(s)	565, 590, 914, 1508, 1865
Eco57I	CTGAAG	1 cut(s)	1071
Eco72I	CACGTG	1 cut(s)	647
Eco88I	CYCGRG	1 cut(s)	1530
EcoNI	CCTNNNNNAGG	2 cut(s)	112, 987
EcoRII	CCWGG	6 cut(s)	574, 586, 657, 1315, 2086, 2265
EcoT14I	CCWWGG	4 cut(s)	108, 1037, 1983, 2295
EcoT22I	ATGCAT	1 cut(s)	2420
ErhI	CCWWGG	4 cut(s)	108, 1037, 1983, 2295
Esp3I	CGTCTC	1 cut(s)	1317
FalI	AAGNNNNNCTT	2 cut(s)	1545, 1577
FaqI	GGGAC	1 cut(s)	1649
FauI	CCCGC	1 cut(s)	1071
FauNDI	CATATG	1 cut(s)	1023
FbaI	TGATCA	1 cut(s)	1018
FblI	GTMKAC	2 cut(s)	357, 2401
FokI	GGATG	8 cut(s)	61, 453, 491, 749, 992, 1269, 1706, 1826
FspBI	CTAG	7 cut(s)	35, 141, 264, 668, 1523, 2111, 2147
GlaI	GCGC	4 cut(s)	152, 845, 1061, 1195
GsuI	CTGGAG	2 cut(s)	1299, 1401
HaeIII	GGCC	5 cut(s)	404, 542, 657, 1180, 2274
HapII	CCGG	7 cut(s)	92, 154, 229, 593, 633, 929, 1633
HgaI	GACGC	2 cut(s)	249, 1968
HhaI	GCGC	4 cut(s)	153, 846, 1062, 1196
Hin1I	GRCGYC	1 cut(s)	260
Hin6I	GCGC	4 cut(s)	151, 844, 1060, 1194
HinP1I	GCGC	4 cut(s)	151, 844, 1060, 1194
HincII	GTYRAC	1 cut(s)	446
HindII	GTYRAC	1 cut(s)	446
HindIII	AAGCTT	1 cut(s)	305
HpaII	CCGG	7 cut(s)	92, 154, 229, 593, 633, 929, 1633
HphI	GGTGA	4 cut(s)	19, 289, 445, 1901
Hpy188I	TCNGA	7 cut(s)	225, 688, 1095, 1456, 1756, 2130, 2212
HpyAV	CCTTC	8 cut(s)	983, 1167, 1307, 2058, 2165, 2230, 2340, 2461
HpyCH4III	ACNGT	6 cut(s)	277, 626, 1680, 1832, 1907, 2498
HpyCH4IV	ACGT	2 cut(s)	78, 646
HpyF3I	CTNAG	7 cut(s)	462, 1092, 1149, 1199, 1430, 2209, 2364
HpySE526I	ACGT	2 cut(s)	78, 646
Hsp92I	GRCGYC	1 cut(s)	260
HspAI	GCGC	4 cut(s)	151, 844, 1060, 1194
Kpn2I	TCCGGA	1 cut(s)	592
KroI	GCCGGC	1 cut(s)	153
KroNI	GCCGGC	1 cut(s)	155
Ksp22I	TGATCA	1 cut(s)	1018
LmnI	GCTCC	4 cut(s)	31, 94, 1738, 1768
MaeI	CTAG	7 cut(s)	35, 141, 264, 668, 1523, 2111, 2147
MaeII	ACGT	2 cut(s)	78, 646
MaeIII	GTNAC	5 cut(s)	7, 433, 1398, 1625, 1901
MfeI	CAATTG	1 cut(s)	569
MflI	RGATCY	2 cut(s)	2121, 2352
MhlI	GDGCHC	2 cut(s)	134, 179
MlsI	TGGCCA	1 cut(s)	404
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	5 cut(s)	391, 434, 451, 1082, 2189
MmeI	TCCRAC	2 cut(s)	213, 2099
Mox20I	TGGCCA	1 cut(s)	404
Mph1103I	ATGCAT	1 cut(s)	2420
MroI	TCCGGA	1 cut(s)	592
MroNI	GCCGGC	1 cut(s)	153
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	5 cut(s)	696, 897, 1500, 1608, 2533
MslI	CAYNNNNRTG	4 cut(s)	22, 635, 1812, 2211
Msp20I	TGGCCA	1 cut(s)	404
MspA1I	CMGCKG	2 cut(s)	1493, 1658
MspI	CCGG	7 cut(s)	92, 154, 229, 593, 633, 929, 1633
MspR9I	CCNGG	7 cut(s)	576, 588, 659, 1317, 1634, 2088, 2267
MunI	CAATTG	1 cut(s)	569
Mva1269I	GAATGC	2 cut(s)	1705, 1937
MvaI	CCWGG	6 cut(s)	576, 588, 659, 1317, 2088, 2267
MvnI	CGCG	2 cut(s)	828, 1194
NaeI	GCCGGC	1 cut(s)	155
NciI	CCSGG	1 cut(s)	1634
NcoI	CCATGG	1 cut(s)	1983
NdeI	CATATG	1 cut(s)	1023
NgoMIV	GCCGGC	1 cut(s)	153
NlaIV	GGNNCC	5 cut(s)	566, 716, 772, 819, 1711
NmeAIII	GCCGAG	2 cut(s)	987, 1744
NmuCI	GTSAC	4 cut(s)	7, 433, 1625, 1901
NruI	TCGCGA	1 cut(s)	828
NsiI	ATGCAT	1 cut(s)	2420
NspI	RCATGY	4 cut(s)	793, 1522, 2284, 2422
OliI	CACNNNNGTG	1 cut(s)	635
PaeI	GCATGC	1 cut(s)	1522
PaeR7I	CTCGAG	1 cut(s)	1530
PceI	AGGCCT	2 cut(s)	1180, 2274
PctI	GAATGC	2 cut(s)	1705, 1937
PdiI	GCCGGC	1 cut(s)	155
PfeI	GAWTC	6 cut(s)	181, 596, 606, 1336, 1434, 1802
Pfl23II	CGTACG	1 cut(s)	1832
PflMI	CCANNNNNTGG	2 cut(s)	1167, 2087
PinAI	ACCGGT	2 cut(s)	632, 928
PleI	GAGTC	5 cut(s)	391, 433, 451, 1081, 2188
PmaCI	CACGTG	1 cut(s)	647
PmlI	CACGTG	1 cut(s)	647
PpsI	GAGTC	5 cut(s)	391, 433, 451, 1081, 2188
Ppu21I	YACGTR	2 cut(s)	79, 647
PshAI	GACNNNNGTC	1 cut(s)	499
Psp6I	CCWGG	6 cut(s)	574, 586, 657, 1315, 2086, 2265
PspCI	CACGTG	1 cut(s)	647
PspGI	CCWGG	6 cut(s)	574, 586, 657, 1315, 2086, 2265
PspLI	CGTACG	1 cut(s)	1832
PspN4I	GGNNCC	5 cut(s)	566, 716, 772, 819, 1711
PspPI	GGNCC	5 cut(s)	565, 590, 914, 1508, 1865
PstI	CTGCAG	2 cut(s)	1186, 1657
PstNI	CAGNNNCTG	1 cut(s)	1493
PsuI	RGATCY	2 cut(s)	2121, 2352
PvuII	CAGCTG	2 cut(s)	1493, 1658
RruI	TCGCGA	1 cut(s)	828
RsaI	GTAC	4 cut(s)	77, 86, 1047, 1834
RsaNI	GTAC	4 cut(s)	76, 85, 1046, 1833
RseI	CAYNNNNRTG	4 cut(s)	22, 635, 1812, 2211
SaqAI	TTAA	5 cut(s)	696, 897, 1500, 1608, 2533
Sau96I	GGNCC	5 cut(s)	565, 590, 914, 1508, 1865
SchI	GAGTC	5 cut(s)	391, 434, 451, 1082, 2189
ScrFI	CCNGG	7 cut(s)	576, 588, 659, 1317, 1634, 2088, 2267
SduI	GDGCHC	2 cut(s)	134, 179
SfcI	CTRYAG	3 cut(s)	1182, 1653, 2134
Sfr274I	CTCGAG	1 cut(s)	1530
SgrAI	CRCCGGYG	2 cut(s)	632, 928
SinI	GGWCC	5 cut(s)	565, 590, 914, 1508, 1865
SlaI	CTCGAG	1 cut(s)	1530
SmiMI	CAYNNNNRTG	4 cut(s)	22, 635, 1812, 2211
SmlI	CTYRAG	3 cut(s)	1137, 1530, 2285
SmoI	CTYRAG	3 cut(s)	1137, 1530, 2285
SphI	GCATGC	1 cut(s)	1522
SseBI	AGGCCT	2 cut(s)	1180, 2274
SsiI	CCGC	5 cut(s)	5, 376, 654, 1064, 1109
SspMI	CTAG	7 cut(s)	35, 141, 264, 668, 1523, 2111, 2147
StuI	AGGCCT	2 cut(s)	1180, 2274
StyD4I	CCNGG	7 cut(s)	574, 586, 657, 1315, 1632, 2086, 2265
StyI	CCWWGG	4 cut(s)	108, 1037, 1983, 2295
TaaI	ACNGT	6 cut(s)	277, 626, 1680, 1832, 1907, 2498
TaiI	ACGT	2 cut(s)	81, 649
TaqI	TCGA	7 cut(s)	169, 195, 703, 727, 1531, 2277, 2334
TaqII	GACCGA	1 cut(s)	1882
TauI	GCSGC	2 cut(s)	657, 1112
TfiI	GAWTC	6 cut(s)	181, 596, 606, 1336, 1434, 1802
Tru1I	TTAA	5 cut(s)	696, 897, 1500, 1608, 2533
Tru9I	TTAA	5 cut(s)	696, 897, 1500, 1608, 2533
TseFI	GTSAC	4 cut(s)	7, 433, 1625, 1901
Tsp45I	GTSAC	4 cut(s)	7, 433, 1625, 1901
TspDTI	ATGAA	9 cut(s)	65, 314, 596, 1585, 1602, 1949, 2493, 2497, 2503
TspGWI	ACGGA	3 cut(s)	707, 1991, 2173
Van91I	CCANNNNNTGG	2 cut(s)	1167, 2087
VpaK11BI	GGWCC	5 cut(s)	565, 590, 914, 1508, 1865
XagI	CCTNNNNNAGG	2 cut(s)	112, 987
XapI	RAATTY	2 cut(s)	937, 1956
XbaI	TCTAGA	2 cut(s)	263, 667
XceI	RCATGY	4 cut(s)	793, 1522, 2284, 2422
XhoI	CTCGAG	1 cut(s)	1530
XmiI	GTMKAC	2 cut(s)	357, 2401
XspI	CTAG	7 cut(s)	35, 141, 264, 668, 1523, 2111, 2147
Zsp2I	ATGCAT	1 cut(s)	2420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.