Rmu_sc0002971.1_g000004

Homeobox-leucine zipper protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002971.1
Physical Location & Seq
Forward (+)
21176 .. 24011
2836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002971.1_g000004.1.cds

Sequence Viewer

Length: 1512 bp
atggatttagagccttggagtgtacctgaagtcttgcgcccgctttatgagtcttcaacacttctcgctcagaagacaactatggcagctttacgcaatttgaggcagatttctcaagtagtttctcagcctaattccaatggttggggaaggaggcctgcagctctgcgcgctcttagtcaaagattgagcaagggtttcaacgaagcagtgaatgggtttacagatgagggatggtctattttagaaagtgatggtgttgatgacattacccttcttgtgaactcgtctccaggcaagatgatgggtgcgaatctttatgccaatggagttccatctatgagcaatgcagtgttatgtgccaaagcatctatgttactccaaaatgtgcctccagccatacttcttagattcttgcgagaacaccgatcagagtgggctgacagaagtattgatgcgtattcagctgctgctattaaagctggtccatgtggcatgctaggttctcgagctggaagtttcggggatcaagttattcttccactggctcacacaatagaacatgaagagttcatggaggtcattaagattgaaaatatgggtcactaccgggacgatatgatgatgcctgcagctgacattttcctcttgcaactgtgtagtggagtggatgaaaatgctgttggcacctgtgccgagcttgtctttgctcctattgatgcctctttttctgatgatgctccaattctaccatctggttttcgcatcattcctcttgattctcacatggatgcccccagtccaaaccgtactcttgatcttgcctctgctcttgaaattggaccgacaggaaacagatcatctggtgataatgctggtcactgtgggaatacaaaatctgttatgacaatagcattccaatttgcatttgaaattcatcttcaagataatgtagcgtccatggcaaggcagtatatccgtagtattatagcagcagtgcagagggtggcactggcactctccccttctcgttttggttctcatgctggttttcgcccaccacctggcactcctgaagcacaaacactagctggttggatctgtcagagctataggtgctatctaggggtagaactactaaaaagcgaaggaagtgagtccattctcaaatccctctggcatcactcggatgcaattttatgctgctctttgaaggctttgccagtatttacatttgcaaaccaggcaggcctcgacatgcttgagaccaccttggttgcacttcaagacattacactggaaaagattttcgatgacaatggaaggaagatcttgtttactgagttcccacagatcatgcagcagggttttatgtgtctacaaggtggtatatgcatgtcaagcatgggaagaccaatctcttatgagagagcagtggcgtggaaggtgttgaatgaagaagaaactgctcactgtatctgcttcatgttcatcaactggtcatttgtttaa

Protein Analysis

503

Amino Acids

54.98

Weight (kDa)

5.22

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 686
AccB7I CCANNNNNTGG 2 cut(s) 144, 1064
AccI GTMKAC 1 cut(s) 1378
AccII CGCG 1 cut(s) 171
AciI CCGC 1 cut(s) 41
AclWI GGATC 2 cut(s) 534, 1106
AcsI RAATTY 1 cut(s) 933
AcuI CTGAAG 2 cut(s) 48, 1095
AfaI GTAC 2 cut(s) 24, 811
AfiI CCNNNNNNNGG 3 cut(s) 144, 966, 1064
AgsI TTSAA 9 cut(s) 57, 202, 593, 836, 932, 944, 1213, 1286, 1453
AjnI CCWGG 3 cut(s) 292, 1063, 1242
AjuI GAANNNNNNNTTGG 2 cut(s) 666, 698
AluBI AGCT 9 cut(s) 89, 164, 467, 482, 512, 635, 700, 1091, 1110
AluI AGCT 9 cut(s) 89, 164, 467, 482, 512, 635, 700, 1091, 1110
Alw26I GTCTC 2 cut(s) 294, 1259
AlwI GGATC 2 cut(s) 534, 1106
AlwNI CAGNNNCTG 1 cut(s) 470
Ama87I CYCGRG 1 cut(s) 507
AoxI GGCC 2 cut(s) 155, 1249
ApeKI GCWGC 8 cut(s) 86, 161, 467, 470, 632, 992, 1203, 1360
ApoI RAATTY 1 cut(s) 933
AspLEI GCGC 3 cut(s) 39, 171, 173
AspS9I GGNCC 2 cut(s) 485, 842
AsuC2I CCSGG 1 cut(s) 611
AsuHPI GGTGA 1 cut(s) 878
AvaI CYCGRG 1 cut(s) 507
AvaII GGWCC 2 cut(s) 485, 842
BanI GGYRCC 1 cut(s) 686
BbsI GAAGAC 3 cut(s) 45, 80, 1417
BbvI GCAGC 8 cut(s) 98, 173, 454, 457, 644, 1004, 1190, 1372
BccI CCATC 5 cut(s) 228, 248, 298, 343, 760
BciT130I CCWGG 3 cut(s) 294, 1065, 1244
BcnI CCSGG 1 cut(s) 611
BcoDI GTCTC 2 cut(s) 294, 1259
BfaI CTAG 3 cut(s) 500, 1088, 1124
BfmI CTRYAG 3 cut(s) 159, 630, 1111
BglII AGATCT 1 cut(s) 1329
BisI GCNGC 8 cut(s) 87, 162, 468, 471, 633, 993, 1204, 1361
BlsI GCNGC 8 cut(s) 88, 163, 469, 472, 634, 994, 1205, 1362
Bme1390I CCNGG 4 cut(s) 294, 611, 1065, 1244
Bme18I GGWCC 2 cut(s) 485, 842
BmeT110I CYCGRG 1 cut(s) 507
BmgT120I GGNCC 2 cut(s) 485, 842
BmiI GGNNCC 1 cut(s) 688
BmrFI CCNGG 4 cut(s) 294, 611, 1065, 1244
BmrI ACTGGG 1 cut(s) 792
BmsI GCATC 9 cut(s) 377, 445, 615, 709, 727, 774, 781, 1180, 1189
BmuI ACTGGG 1 cut(s) 792
BpiI GAAGAC 3 cut(s) 45, 80, 1417
BpmI CTGGAG 2 cut(s) 276, 378
BpuEI CTTGAG 2 cut(s) 99, 1283
BpuMI CCSGG 1 cut(s) 611
BsaI GGTCTC 1 cut(s) 1259
BsaJI CCNNGG 3 cut(s) 14, 960, 1272
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 966, 1064
Bse1I ACTGG 6 cut(s) 549, 798, 1017, 1223, 1302, 1502
Bse3DI GCAATG 1 cut(s) 352
BseBI CCWGG 3 cut(s) 294, 1065, 1244
BseDI CCNNGG 3 cut(s) 14, 960, 1272
BseGI GGATG 4 cut(s) 239, 676, 796, 1195
BseLI CCNNNNNNNGG 3 cut(s) 144, 966, 1064
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 3 cut(s) 83, 140, 1332
BseNI ACTGG 6 cut(s) 549, 798, 1017, 1223, 1302, 1502
BsePI GCGCGC 1 cut(s) 169
BseXI GCAGC 8 cut(s) 98, 173, 454, 457, 644, 1004, 1190, 1372
BsgI GTGCAG 1 cut(s) 1019
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 2 cut(s) 157, 1251
BshNI GGYRCC 1 cut(s) 686
BsiHKCI CYCGRG 1 cut(s) 507
BsiSI CCGG 1 cut(s) 610
BslFI GGGAC 1 cut(s) 626
BslI CCNNNNNNNGG 3 cut(s) 144, 966, 1064
BsmAI GTCTC 2 cut(s) 294, 1259
BsmBI CGTCTC 1 cut(s) 294
BsmFI GGGAC 1 cut(s) 626
BsmI GAATGC 1 cut(s) 914
BsnI GGCC 2 cut(s) 157, 1251
Bso31I GGTCTC 1 cut(s) 1259
BsoBI CYCGRG 1 cut(s) 507
Bsp143I GATC 7 cut(s) 428, 526, 817, 857, 1098, 1329, 1353
Bsp19I CCATGG 1 cut(s) 960
BspACI CCGC 1 cut(s) 41
BspANI GGCC 2 cut(s) 157, 1251
BspCNI CTCAG 3 cut(s) 82, 139, 1333
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 688
BspMAI CTGCAG 2 cut(s) 163, 634
BspPI GGATC 2 cut(s) 534, 1106
BspT107I GGYRCC 1 cut(s) 686
BspTNI GGTCTC 1 cut(s) 1259
BsrDI GCAATG 1 cut(s) 352
BsrI ACTGG 6 cut(s) 549, 798, 1017, 1223, 1302, 1502
BssECI CCNNGG 3 cut(s) 14, 960, 1272
BssHII GCGCGC 1 cut(s) 169
BssMI GATC 7 cut(s) 428, 526, 817, 857, 1098, 1329, 1353
BssT1I CCWWGG 3 cut(s) 14, 960, 1272
Bst2UI CCWGG 3 cut(s) 294, 1065, 1244
Bst4CI ACNGT 4 cut(s) 657, 809, 884, 1475
Bst6I CTCTTC 1 cut(s) 561
BstC8I GCNNGC 6 cut(s) 41, 159, 171, 497, 630, 1249
BstDEI CTNAG 5 cut(s) 69, 126, 176, 407, 1341
BstDSI CCRYGG 1 cut(s) 960
BstF5I GGATG 4 cut(s) 239, 676, 796, 1195
BstFNI CGCG 1 cut(s) 171
BstHHI GCGC 3 cut(s) 39, 171, 173
BstKTI GATC 7 cut(s) 431, 529, 820, 860, 1101, 1332, 1356
BstMAI GTCTC 2 cut(s) 294, 1259
BstMBI GATC 7 cut(s) 428, 526, 817, 857, 1098, 1329, 1353
BstMWI GCNNNNNNNGC 7 cut(s) 170, 464, 479, 962, 1116, 1244, 1401
BstNI CCWGG 3 cut(s) 294, 1065, 1244
BstNSI RCATGY 3 cut(s) 499, 1261, 1399
BstSCI CCNGG 4 cut(s) 292, 609, 1063, 1242
BstSFI CTRYAG 3 cut(s) 159, 630, 1111
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 8 cut(s) 98, 173, 454, 457, 644, 1004, 1190, 1372
BstV2I GAAGAC 3 cut(s) 45, 80, 1417
BstX2I RGATCY 2 cut(s) 1098, 1329
BstYI RGATCY 2 cut(s) 1098, 1329
BsuRI GGCC 2 cut(s) 157, 1251
BtgI CCRYGG 1 cut(s) 960
BtsCI GGATG 4 cut(s) 239, 676, 796, 1195
BtsI GCAGTG 4 cut(s) 216, 357, 1002, 1440
BtsIMutI CAGTG 9 cut(s) 216, 357, 542, 880, 1002, 1010, 1295, 1440, 1471
Cac8I GCNNGC 6 cut(s) 41, 159, 171, 497, 630, 1249
CaiI CAGNNNCTG 1 cut(s) 470
CfoI GCGC 3 cut(s) 39, 171, 173
Cfr13I GGNCC 2 cut(s) 485, 842
CseI GACGC 1 cut(s) 945
Csp6I GTAC 2 cut(s) 23, 810
CspCI CAANNNNNGTGG 2 cut(s) 1258, 1293
CviQI GTAC 2 cut(s) 23, 810
DdeI CTNAG 5 cut(s) 69, 126, 176, 407, 1341
DpnI GATC 7 cut(s) 430, 528, 819, 859, 1100, 1331, 1355
DpnII GATC 7 cut(s) 428, 526, 817, 857, 1098, 1329, 1353
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
Eco130I CCWWGG 3 cut(s) 14, 960, 1272
Eco147I AGGCCT 2 cut(s) 157, 1251
Eco31I GGTCTC 1 cut(s) 1259
Eco47I GGWCC 2 cut(s) 485, 842
Eco57I CTGAAG 2 cut(s) 48, 1095
Eco88I CYCGRG 1 cut(s) 507
EcoRII CCWGG 3 cut(s) 292, 1063, 1242
EcoT14I CCWWGG 3 cut(s) 14, 960, 1272
EcoT22I ATGCAT 1 cut(s) 1397
ErhI CCWWGG 3 cut(s) 14, 960, 1272
Esp3I CGTCTC 1 cut(s) 294
FalI AAGNNNNNCTT 2 cut(s) 522, 554
FaqI GGGAC 1 cut(s) 626
FauI CCCGC 1 cut(s) 48
FblI GTMKAC 1 cut(s) 1378
Fnu4HI GCNGC 8 cut(s) 87, 162, 468, 471, 633, 993, 1204, 1361
FokI GGATG 4 cut(s) 246, 683, 803, 1202
Fsp4HI GCNGC 8 cut(s) 87, 162, 468, 471, 633, 993, 1204, 1361
FspBI CTAG 3 cut(s) 500, 1088, 1124
GlaI GCGC 3 cut(s) 38, 170, 172
GluI GCNGC 8 cut(s) 87, 162, 468, 471, 633, 993, 1204, 1361
GsuI CTGGAG 2 cut(s) 276, 378
HaeIII GGCC 2 cut(s) 157, 1251
HapII CCGG 1 cut(s) 610
HgaI GACGC 1 cut(s) 945
HhaI GCGC 3 cut(s) 39, 171, 173
Hin6I GCGC 3 cut(s) 37, 169, 171
HinP1I GCGC 3 cut(s) 37, 169, 171
HinfI GANTC 5 cut(s) 50, 313, 411, 779, 1157
HpaII CCGG 1 cut(s) 610
HphI GGTGA 1 cut(s) 878
Hpy166II GTNNAC 5 cut(s) 23, 222, 283, 1338, 1379
Hpy188I TCNGA 5 cut(s) 72, 433, 733, 1107, 1189
Hpy188III TCNNGA 7 cut(s) 507, 776, 815, 833, 944, 1073, 1286
Hpy8I GTNNAC 5 cut(s) 23, 222, 283, 1338, 1379
HpyAV CCTTC 7 cut(s) 144, 284, 1035, 1142, 1207, 1317, 1438
HpyCH4III ACNGT 4 cut(s) 657, 809, 884, 1475
HpyF10VI GCNNNNNNNGC 7 cut(s) 170, 464, 479, 962, 1116, 1244, 1401
HpyF3I CTNAG 5 cut(s) 69, 126, 176, 407, 1341
HspAI GCGC 3 cut(s) 37, 169, 171
Kzo9I GATC 7 cut(s) 428, 526, 817, 857, 1098, 1329, 1353
LmnI GCTCC 2 cut(s) 715, 745
Lsp1109I GCAGC 8 cut(s) 98, 173, 454, 457, 644, 1004, 1190, 1372
LweI GCATC 9 cut(s) 377, 445, 615, 709, 727, 774, 781, 1180, 1189
MaeI CTAG 3 cut(s) 500, 1088, 1124
MaeIII GTNAC 3 cut(s) 375, 602, 878
MalI GATC 7 cut(s) 430, 528, 819, 859, 1100, 1331, 1355
MboI GATC 7 cut(s) 428, 526, 817, 857, 1098, 1329, 1353
MboII GAAGA 9 cut(s) 45, 85, 530, 578, 932, 1339, 1422, 1469, 1472
MflI RGATCY 2 cut(s) 1098, 1329
MluCI AATT 7 cut(s) 97, 133, 744, 837, 920, 933, 1194
MlyI GAGTC 2 cut(s) 59, 1166
MmeI TCCRAC 1 cut(s) 1076
Mph1103I ATGCAT 1 cut(s) 1397
MseI TTAA 3 cut(s) 477, 585, 1510
MslI CAYNNNNRTG 2 cut(s) 789, 1188
MspA1I CMGCKG 2 cut(s) 467, 635
MspI CCGG 1 cut(s) 610
MspR9I CCNGG 4 cut(s) 294, 611, 1065, 1244
Mva1269I GAATGC 1 cut(s) 914
MvaI CCWGG 3 cut(s) 294, 1065, 1244
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 7 cut(s) 170, 464, 479, 962, 1116, 1244, 1401
NciI CCSGG 1 cut(s) 611
NcoI CCATGG 1 cut(s) 960
NdeII GATC 7 cut(s) 428, 526, 817, 857, 1098, 1329, 1353
NlaIV GGNNCC 1 cut(s) 688
NmeAIII GCCGAG 1 cut(s) 721
NmuCI GTSAC 2 cut(s) 602, 878
NsiI ATGCAT 1 cut(s) 1397
NspI RCATGY 3 cut(s) 499, 1261, 1399
PaeI GCATGC 1 cut(s) 499
PaeR7I CTCGAG 1 cut(s) 507
PauI GCGCGC 1 cut(s) 169
PceI AGGCCT 2 cut(s) 157, 1251
PctI GAATGC 1 cut(s) 914
PfeI GAWTC 3 cut(s) 313, 411, 779
PflMI CCANNNNNTGG 2 cut(s) 144, 1064
PkrI GCNGC 8 cut(s) 88, 163, 469, 472, 634, 994, 1205, 1362
PleI GAGTC 2 cut(s) 58, 1165
PpsI GAGTC 2 cut(s) 58, 1165
Psp6I CCWGG 3 cut(s) 292, 1063, 1242
PspGI CCWGG 3 cut(s) 292, 1063, 1242
PspN4I GGNNCC 1 cut(s) 688
PspPI GGNCC 2 cut(s) 485, 842
PstI CTGCAG 2 cut(s) 163, 634
PstNI CAGNNNCTG 1 cut(s) 470
PsuI RGATCY 2 cut(s) 1098, 1329
PteI GCGCGC 1 cut(s) 169
PvuII CAGCTG 2 cut(s) 467, 635
RsaI GTAC 2 cut(s) 24, 811
RsaNI GTAC 2 cut(s) 23, 810
RseI CAYNNNNRTG 2 cut(s) 789, 1188
SaqAI TTAA 3 cut(s) 477, 585, 1510
SatI GCNGC 8 cut(s) 87, 162, 468, 471, 633, 993, 1204, 1361
Sau3AI GATC 7 cut(s) 428, 526, 817, 857, 1098, 1329, 1353
Sau96I GGNCC 2 cut(s) 485, 842
SchI GAGTC 2 cut(s) 59, 1166
ScrFI CCNGG 4 cut(s) 294, 611, 1065, 1244
SfaNI GCATC 9 cut(s) 377, 445, 615, 709, 727, 774, 781, 1180, 1189
SfcI CTRYAG 3 cut(s) 159, 630, 1111
Sfr274I CTCGAG 1 cut(s) 507
SinI GGWCC 2 cut(s) 485, 842
SlaI CTCGAG 1 cut(s) 507
SmiMI CAYNNNNRTG 2 cut(s) 789, 1188
SmlI CTYRAG 3 cut(s) 114, 507, 1262
SmoI CTYRAG 3 cut(s) 114, 507, 1262
SphI GCATGC 1 cut(s) 499
Sse9I AATT 7 cut(s) 97, 133, 744, 837, 920, 933, 1194
SseBI AGGCCT 2 cut(s) 157, 1251
SsiI CCGC 1 cut(s) 41
SspMI CTAG 3 cut(s) 500, 1088, 1124
StuI AGGCCT 2 cut(s) 157, 1251
StyD4I CCNGG 4 cut(s) 292, 609, 1063, 1242
StyI CCWWGG 3 cut(s) 14, 960, 1272
TaaI ACNGT 4 cut(s) 657, 809, 884, 1475
TaqI TCGA 3 cut(s) 508, 1254, 1311
TaqII GACCGA 1 cut(s) 859
TasI AATT 7 cut(s) 97, 133, 744, 837, 920, 933, 1194
TfiI GAWTC 3 cut(s) 313, 411, 779
Tru1I TTAA 3 cut(s) 477, 585, 1510
Tru9I TTAA 3 cut(s) 477, 585, 1510
TscAI CASTG 9 cut(s) 216, 357, 549, 887, 1002, 1017, 1302, 1440, 1478
TseFI GTSAC 2 cut(s) 602, 878
TseI GCWGC 8 cut(s) 86, 161, 467, 470, 632, 992, 1203, 1360
Tsp45I GTSAC 2 cut(s) 602, 878
TspDTI ATGAA 7 cut(s) 562, 579, 687, 926, 1470, 1474, 1480
TspGWI ACGGA 1 cut(s) 968
TspRI CASTG 9 cut(s) 216, 357, 549, 887, 1002, 1017, 1302, 1440, 1478
Van91I CCANNNNNTGG 2 cut(s) 144, 1064
VpaK11BI GGWCC 2 cut(s) 485, 842
XapI RAATTY 1 cut(s) 933
XceI RCATGY 3 cut(s) 499, 1261, 1399
XhoI CTCGAG 1 cut(s) 507
XmiI GTMKAC 1 cut(s) 1378
XspI CTAG 3 cut(s) 500, 1088, 1124
Zsp2I ATGCAT 1 cut(s) 1397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.